gga3b (gga3)


Basic Information

Item Value
gene id gga3b
gene name gga3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11328269 ~ 11338111 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823755.1
CGGAATAAAAGCATTAGCATTTCATTTGGCAGATTTTAAATGAAATACCGAGGCGAAacgaaaaaaaatacaatggttCGATGTTAGATgctgtttcttctttttccacacaaaaaaaaatccgaGCAATAATTTTGGACTCTCGTGCACACGCTGGTGACGTCAAGCGATGTTTTTACAATGTGTTTTTAGTGCTATGGCGTACCAGGAAGGGGAGTCGCTCGAATCTTGGCTCAATAAAGCCACCCATCCGACAAACAGACAGGAGGACTGGGAGTACATCATAGGCTTCTGTGATCAAATCAACAAGGAACTGGAAGGTCCTCAAATAGCCGTGACTCTGCTCGTCCATAAAATCTACTCACCACAAGAATGGGAAGCTATTCAGGCTCTGACAGTATTGGAGGCATGTATGAAGAACTGCGGGAGAAGGTTTCATAATGAAGTCGGAAAATACAGATTTTTGAATGAGCTGGTTAAAATTGTGTCTCCAATGTACATTGGGAAGAGTACACCTGAGAAGGTGAAGATGAAGATTATAGAGATGCTGTACAGCTGGACGGTGGCTTTTCCAAATGAAACCAAGATCGGTGAAGCCTACCAGGCGCTGAGAGCACAGGGCCTTGTGAAACATGACCCGGAGTTACCGATGGACAAGACTCTGATTCCCTCTCCTCCGACACGACCAAAACATCCGGTGTTTGACAACGAGGACATGGGCAAGctgcttgCTGAGCTTCTCCGGAGTAAAAATCCAGAGGACCTCCAGGAAGCCAACAGATTAATTAAAAACATGGTGAAAGAGgaTGAGGCTCGAGTGCATAAGGTTACAAAGCGTATACACACACTGGACGAGGTGAACATCAATGTCAAGCTGCTGACGGAGATGCTGTCCCACTACAAtaaagacagctcctctgacTCAGACAAGGATATCAttaagGAGCTCTACGAGCGGTGTGACAAGCTGAGGCGTGCGGCGTTCAAAATGGCTACTGAGACAGAAGACAATGACACCAGTTTAGGTGATATCCTGCAGGCCAGCGATGACCTCTCCAGAGTCATCAACTCCTATAAGAAGATAGTTGAGGGGCAGCCCATCAACGGTGACAGCGAGGAGCCTCGATCTACAGCCGGTCACGGCGAGAGTGAGACCACAGATATGCTGATCGACCTCGCTGGCTTCGACACTCCGAGCCCTCCTCAACCTGCCGCCCCTCTTTTTCAGTCCTCAAATCTTGTTTCCACCAATCCTGCGGCTTCCCCCATCCCtgtcctgcctcctcctcccaaACGTCCAGCCGGCTCCCATGGCAGTCAGAGCAACAGCCCGTGTCACCCCCCCCTCGACAAGGCCTCCACTGCACTCTCTCTCCTTGACGATGAGCTGCTGTCTCTAGgACTGAACGACCCACCTGTCTCTCTGAGCAGCCAATCAAAACCCAAGTTGAACGAATTGACCAATCAGTGGATTTCCTTGCAGGCTCCAGCTTCAGGTGTGGATATGTTTTGCAGTGTAGCTTGTTCAGGTCCTGCGGTGCCTCAAGCTGAACCAGCTGCTGCCACACACAGTCTACAGAACCTGCAAGACCTGGCCATGATGGACTTTTCAGATCACAAGAGTTCGTCCATCAAGATGACGGCCAAAGGAAGCAGCTTCGGGATGCCTGCAGCAGCACCTTCCCTCATACATGGGCAGGGTTCTCCTTCTTCACCTTCTTTTCTCCAGGGTATGATGCCCGGCTCTCCTGCTCTGTCCCATGCCAAGGCCCAGAACCTGGTCTCATCCCCGGGCAGCCCACTGTTCCGCTCTCTATCCCCCTGCCACCCTCCCCTTCAAGGCAGCCCGGCCAGAGCCACAGACATCTCCCTGAGCAATGTGCAcgtccctctggaggccatcaGACCGAGTAAAGTGCTGCCTGTGACGGCCTACGATAAGGACGGTGTTCGCATGCTCCTCAACTTTGCATCTGACTGCCCCCCCGGCAGGCCTGACGTGTTGGTGATGGTGGTGTCCATGCTCAATACAGCACCGTTGCTTGTTCACAGTGTGGTACTCCAAGCGGCTGTGCCCAAGTCAATGAAGGTGAAGCTGCAGCCTCCATCAGGAGCAGAACTGGCACCATTTAACCCTATCCTACCTCCAGCCTCCATTAACCAGATCATGTTGCTGGCCAACCCAACAAAGGAGAAGGTGCGTCTGCGCTACAAGCTGGCTTTCACACTAGGACAGCGTCTGTGTAACGAGGTTGGAGAGGTCAACCAATTTCCTCCACCAGAGACATGGGGTCATCTATAGAAGTGTACAGGCCTGCTGCCACTTAGCAGGGACAGGCTGCTTCGTACTCCATGAAGGGGTGTGTGCATATTTACATTTACCccagagagaaagaaggggaaGGTGGAGAAATTCAGCTGCACTCTGCCTTTCAGCTTCACATTCCATATAGTTGTTAATTTGGCCATTGTTGTTACAGGCAGTGAGAAGCTAACAGCAGACACAAAAGTTGTATTTACATAGTGCTTGTATACTTTTCTGAAAAAAGCTGGCAAGTAAAACAGCCATGGTGTTTACAAGTCGATGGAACTAACATAATATTTTAATGGATTTTCCCCAAGATGAACCTAACATATTTGAATGTACTATAAATAACCAATGCATTAGAGCTCAGACCTGACTGATGTGATAGATTACGTTTGTAAAAACAGAGCCTAAGATACAACAGTTACAGATACAaaagcttttatttattcctcTGGCTGAGTACTTTCTTAGCCCACAGAAAATATACTTGAATATATCCAGGAATTTGAAAATGGCATGTCTTCGGATGAAGGTAAACTGAAACATTCATTCGTTAAGTAAAAAGTACTGTACTGATTATTTCAGCCATCAAGATTTTTGACATGGTTATCTATTATACGAGTTAATGTAGCCCTGTTTTAGATTAGTGGACCAACAGTATTTAATGTCGTGCTGTAAAGGCAACCAACTGCACTTAAGATGGTTCATTCTTTAATTACAAATGTCATTATGACTTCAGTCTACTAAGTCCAATTCTGAGTTTTATTTcaaatgattttcttttttttcttttttttttaaatgaacggCAATTGTCCGCATTTCAGTCATGATTTTAGCAGTGGGTatccatatttttgttgtgaaTTTAAAAGATGTTTACTCTTCTATCAGTGTCAGTATTGAGTATTGGTGTCATATTTATTCCTTTCTGTTCTGTTAATAGTATTTCAGTGCATCACTGAACCTAGAAAATGTGAACTGAAAGCTCTAAATTTGTTGGCtcgaaaaaagtggaaatctgTCACCAGGCAGATAACTTGTGTGTTCAGCAGTGGGAAAGAGTGGAACTGTGCTGTGAGTAAAGTTTCATAAATCAGTCCACCCAAACCTCCCTTAGGTCCTTTCTCTGGTAGTCCTAAACTCATCATATGGGATGTACAGAAgaagtgtgtgtttaatgtacaTAGTGTGTAATGTACCTATTGGTTTGTTGTATGACAAGTTATGTGAACAAGTGACGTGTAGATGTTGGGAGAGTGTTAGGTCTGTACATACTATATGATGTGCCATTTGTTCACTacatcaaaaaaataaatatttctttcGATGGA

Function

symbol description
gga3 Enables small GTPase binding activity and ubiquitin binding activity. Involved in several processes, including negative regulation of amyloid-beta formation; protein destabilization; and protein transport. Located in lysosome and trans-Golgi network. Part of protein-containing complex.

NR:

description
PREDICTED: ADP-ribosylation factor-binding protein GGA3 isoform X2

GO: NA

KEGG:

id description
K12404 GGA; ADP-ribosylation factor-binding protein GGA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823755.1 True 3642 mRNA 0.46 17 11328269 11338111

Neighbor

gene id symbol gene type direction distance location
LOC120573874 sumo2 coding downstream 9719 11310678 ~ 11318550 (-)
LOC120573873 hn1 coding downstream 18614 11299207 ~ 11309655 (-)
LOC120573949 NA coding downstream 34558 11289866 ~ 11293711 (-)
LOC120574065 NA coding downstream 64548 11172521 ~ 11263721 (-)
LOC120574485 NA coding downstream 243696 11081719 ~ 11084573 (-)
mif4gdb mif4gd coding upstream 3146 11341257 ~ 11347860 (-)
LOC120574850 LOC104918874,LOC100703643,LOC101483703,LOC106903613 coding upstream 23768 11361879 ~ 11410495 (-)
LOC120574851 NA coding upstream 49953 11388064 ~ 11391242 (-)
LOC120574852 NA coding upstream 54335 11392446 ~ 11394653 (-)
cacng1b LOC102192213,LOC100704449,LOC103361845,LOC101079816,LOC108239284 coding upstream 94359 11432470 ~ 11442800 (-)
G154036 NA non-coding downstream 55421 11271819 ~ 11272848 (-)
G153987 NA non-coding downstream 254493 11069043 ~ 11073776 (-)
G153943 LOC104934589,LOC102791985 non-coding downstream 292753 11033206 ~ 11035516 (-)
G153950 NA non-coding downstream 368748 10950571 ~ 10959521 (-)
G153937 NA non-coding downstream 420661 10905355 ~ 10907608 (-)
G154088 NA non-coding upstream 14092 11352203 ~ 11352565 (-)
G154115 NA non-coding upstream 128797 11466908 ~ 11467112 (-)
G154163 bri3,LOC104946088,LOC103141671 non-coding upstream 191585 11529696 ~ 11557733 (-)
G154173 NA non-coding upstream 301917 11640028 ~ 11641512 (-)
G154175 NA non-coding upstream 305006 11643117 ~ 11649924 (-)
G154033 NA other downstream 102723 11203450 ~ 11225546 (-)
tnrc6c1 LOC103361861 other downstream 190741 11098316 ~ 11137528 (-)
LOC120574486 NA other downstream 247662 11078545 ~ 11080607 (-)
LOC120574455 NA other downstream 536704 10784112 ~ 10791565 (-)
gtpbp1 gtpbp1,LOC104924447,LOC102799794 other downstream 938093 10352158 ~ 10390176 (-)
LOC120574419 NA other upstream 747874 12085985 ~ 12090981 (-)
cep112 NA other upstream 1089393 12427504 ~ 12565471 (-)
LOC120575506 LOC100697827 other upstream 1397333 12735444 ~ 12737483 (-)
iqck NA other upstream 1616863 12954974 ~ 12972829 (-)
sun1 sun1,LOC104947709,LOC102193096,LOC103360714 other upstream 1635149 12973260 ~ 13012781 (-)

Expression


Co-expression Network