LOC120573874 (sumo2)


Basic Information

Item Value
gene id LOC120573874
gene name sumo2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11310678 ~ 11318550 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823762.1
TCGGTTCGAATCATTTAAATGGGCACGAGCACGTGCGCGCACCCGTATTCTTTGTGTGGCAGCATAGAGAAGCGCCAAAAGAGTGACCATGGCTGATGAAAAACCAAAGGAAGCAGTCAAGACAGAAAGCAATGAACACATAAACCTGAAGGTAGCAGGTCAGGATGGATCTATAGTGCAGTTCAAGATCAAAAGACACACGCCGCTCATCAAACTCATGAAGGCCTACTGCGATAGACAGGGACTGGCAATGCGGCAAATCAGGTTCAGATTTGATGGACAGCCAATAAATGAGACGGACACACCATCACAGTTGGAAATGGAAGATGAAGATACAATTGATGTGTTTCAACAACAGACAGGAGGCCTCATATAATCAACATGCTTCACCATTTTCCTCCCTAACATAACCAACCATCCGGGCCTGTGATTCACAGCGGCTGCTTCTTTGCAACTTTTCCTATTGTCTCAACAAAATTCCATGCAGAAGAAGTTTATCTGCTTCACACAACTGCTGTATAGTATTTGAATTATTGCCCTTGttacttttctgtttttgtataTAAACCACACAAAGGTTTTGTTTGTTCATGCTGTATTGTGGTAAATGTTAAGGACTTATTCTGCAAGGTTGCAGACATATAGGACTGTTGATAGAGTAAGAATTAATAAACCTGACTTTTTTCTGGTCAAATGTT

Function

symbol description
sumo2 Enables ubiquitin protein ligase binding activity. Involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and protein sumoylation. Located in PML body.

NR:

description
PREDICTED: small ubiquitin-related modifier 2

GO:

id name namespace
GO:0016925 protein sumoylation biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12160 SUMO, SMT3; small ubiquitin-related modifier

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823762.1 True 698 mRNA 0.42 4 11310678 11318550

Neighbor

gene id symbol gene type direction distance location
LOC120573873 hn1 coding downstream 1023 11299207 ~ 11309655 (-)
LOC120573949 NA coding downstream 16967 11289866 ~ 11293711 (-)
LOC120574065 NA coding downstream 46957 11172521 ~ 11263721 (-)
LOC120574485 NA coding downstream 226105 11081719 ~ 11084573 (-)
c15h17orf75 clg4h17orf75,clg8h17orf75,LOC102789701,LOC101467397,LOC102229770,LOC106934014,LOC106960136 coding downstream 246828 11057892 ~ 11063850 (-)
gga3b gga3 coding upstream 9719 11328269 ~ 11338111 (-)
mif4gdb mif4gd coding upstream 22707 11341257 ~ 11347860 (-)
LOC120574850 LOC104918874,LOC100703643,LOC101483703,LOC106903613 coding upstream 43329 11361879 ~ 11410495 (-)
LOC120574851 NA coding upstream 69514 11388064 ~ 11391242 (-)
LOC120574852 NA coding upstream 73896 11392446 ~ 11394653 (-)
G154036 NA non-coding downstream 37830 11271819 ~ 11272848 (-)
G153987 NA non-coding downstream 236902 11069043 ~ 11073776 (-)
G153943 LOC104934589,LOC102791985 non-coding downstream 275162 11033206 ~ 11035516 (-)
G153950 NA non-coding downstream 351157 10950571 ~ 10959521 (-)
G153937 NA non-coding downstream 403070 10905355 ~ 10907608 (-)
G154088 NA non-coding upstream 33653 11352203 ~ 11352565 (-)
G154115 NA non-coding upstream 148358 11466908 ~ 11467112 (-)
G154163 bri3,LOC104946088,LOC103141671 non-coding upstream 211146 11529696 ~ 11557733 (-)
G154173 NA non-coding upstream 321478 11640028 ~ 11641512 (-)
G154175 NA non-coding upstream 324567 11643117 ~ 11649924 (-)
G154033 NA other downstream 85132 11203450 ~ 11225546 (-)
tnrc6c1 LOC103361861 other downstream 173150 11098316 ~ 11137528 (-)
LOC120574486 NA other downstream 230071 11078545 ~ 11080607 (-)
LOC120574455 NA other downstream 519113 10784112 ~ 10791565 (-)
gtpbp1 gtpbp1,LOC104924447,LOC102799794 other downstream 920502 10352158 ~ 10390176 (-)
LOC120574419 NA other upstream 767435 12085985 ~ 12090981 (-)
cep112 NA other upstream 1108954 12427504 ~ 12565471 (-)
LOC120575506 LOC100697827 other upstream 1416894 12735444 ~ 12737483 (-)
iqck NA other upstream 1636424 12954974 ~ 12972829 (-)
sun1 sun1,LOC104947709,LOC102193096,LOC103360714 other upstream 1654710 12973260 ~ 13012781 (-)

Expression


Co-expression Network