LOC120573908 (tspan10)


Basic Information

Item Value
gene id LOC120573908
gene name tspan10
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14973352 ~ 14975399 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823822.1
TAAACTTCACATCAAAAGTACCATTCTTGCGTGTGTGAGTCACTCACACATGCTTTGATAGCCGCCTAATCCCCTCACTGTGACTCTCACATGATGAAGAAATCCCACGGCTCACAGCAGCCAGAGGCTAAACACTGCATGGTTTCTCCACCTCAGCTCACATGCTCCTTTGTTCATATCGTAGCAAATGCTCCCCCATGCTCCACTTTAGCTTGTGTCACTTTGACCAGCTAAAAGCACAGGGAGAATCGTTTCCAACATGAGGAGATATTTCAGTGCAAACAGAATTTTTTTGCCGTGGTCGAGGAGGGACACCACACATAATGAGTCCAGTCCGCTCATACCAAAGGCAAGCTCtgcaaaagaggacgttgagGAGCTTGGCAATGCCACCCCTGAATTTCACCAAGCAGGGCCAAACACTGGCCAGGACAACAACAGCCCTGTATTCACAAGCATCCAACCACACTACAGATATTCTTTTATGGACTATTTCCTGAAATACTTTCTGTTCCTGTGCAATCTGGTGTTCACAGTTCTGGGCCTGGTGGTCCTTGGTCTGGGCATGTGGGGCCTAATTAGCAAAGAGTCGTTTGCTCAGGAGAAGATCGGCAATATCGGCACTGACCCAATGCTGATACTTGTGACTCTGGGCTTTGTGCTAACTATGCTGTGCCTGTCAGGCTGTGTGGGCGCCTTAAGAGAGAACTGCTCTTTACTGAAGCTGTTCTCTGCAGCAGTGTTGGTGCTCATCACAGCCCAGGTCCTGGCTGCCATTATGGCCTACAGTCTGCAAGATCAGGTTGGAGGCTACCTGCGATCAGGGATGTTAGCTGCCATGGTGCGCTATCAGGACGATCTGGATCTGAGGTTCATCACGGACGAGATTCAGTCAAATCTGCAGTGCTGTGGGGCAGATAACTACCGTGACTGGGAGCTCAACATaTATTACAACTGCTCAGCTCCAGGAGTGCTGGCCTGTGGCGTGCCAGCGACATGCTGTGTGAATCCTTTGGAGAACGGCACAGTGTGGAACTCTCAGTGTGGTTTAGGAGCCCAGCTGCTGGATGAGTTTAGTGCTCAGAGTGAGATCTTCCTGGGTGGCTGTCTGGGGGGAATGTCCCGCTGGATTGAGCAGCATAAAGGCCTGATAGGAACAGTTGGAATCGTCGTACTGGGGGTCCAGATTCTGACTTTGTTTATCACTACACGACTGTTAGAAAGCATCCAGTGGCATAAAGTTTACTTATAACATGGGGTGATGAAAATATTGTGTGCTGATATTTAATGTGTGCTACTTGGCTCTCTACCTGGTTTATCCTTTGTAGTAAACATACTGTACCCCTCAACCATAAGAACAAAAATCTTATTTATAAGGAAGCTAATTTGTCTGTCAAAGTGACAGA
>XM_039823823.1
agtcaaggcgagtcgagcagCAAATGCTCCCCCATGCTCCACTTTAGCTTGTGTCACTTTGACCAGCTAAAAGCACAGGGAGAATCGTTTCCAACATGAGGAGATATTTCAGTGCAAACAGAATTTTTTTGCCGTGGTCGAGGAGGGACACCACACATAATGAGTCCAGTCCGCTCATACCAAAGGCAAGCTCtgcaaaagaggacgttgagGAGCTTGGCAATGCCACCCCTGAATTTCACCAAGCAGGGCCAAACACTGGCCAGGACAACAACAGCCCTGTATTCACAAGCATCCAACCACACTACAGATATTCTTTTATGGACTATTTCCTGAAATACTTTCTGTTCCTGTGCAATCTGGTGTTCACAGTTCTGGGCCTGGTGGTCCTTGGTCTGGGCATGTGGGGCCTAATTAGCAAAGAGTCGTTTGCTCAGGAGAAGATCGGCAATATCGGCACTGACCCAATGCTGATACTTGTGACTCTGGGCTTTGTGCTAACTATGCTGTGCCTGTCAGGCTGTGTGGGCGCCTTAAGAGAGAACTGCTCTTTACTGAAGCTGTTCTCTGCAGCAGTGTTGGTGCTCATCACAGCCCAGGTCCTGGCTGCCATTATGGCCTACAGTCTGCAAGATCAGGTTGGAGGCTACCTGCGATCAGGGATGTTAGCTGCCATGGTGCGCTATCAGGACGATCTGGATCTGAGGTTCATCACGGACGAGATTCAGTCAAATCTGCAGTGCTGTGGGGCAGATAACTACCGTGACTGGGAGCTCAACATaTATTACAACTGCTCAGCTCCAGGAGTGCTGGCCTGTGGCGTGCCAGCGACATGCTGTGTGAATCCTTTGGAGAACGGCACAGTGTGGAACTCTCAGTGTGGTTTAGGAGCCCAGCTGCTGGATGAGTTTAGTGCTCAGAGTGAGATCTTCCTGGGTGGCTGTCTGGGGGGAATGTCCCGCTGGATTGAGCAGCATAAAGGCCTGATAGGAACAGTTGGAATCGTCGTACTGGGGGTCCAGATTCTGACTTTGTTTATCACTACACGACTGTTAGAAAGCATCCAGTGGCATAAAGTTTACTTATAACATGGGGTGATGAAAATATTGTGTGCTGATATTTAATGTGTGCTACTTGGCTCTCTACCTGGTTTATCCTTTGTAGTAAACATACTGTACCCCTCAACCATAAGAACAAAAATCTTATTTATAAGGAAGCTAATTTGTCTGTCAAAGTGACAGA

Function

symbol description
tspan10 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TSPAN10 (tetraspanin 10).

NR:

description
PREDICTED: tetraspanin-10

GO: NA

KEGG:

id description
K17351 TSPAN10; tetraspanin-10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823822.1 True 1406 mRNA 0.48 3 14973352 14975005
XM_039823823.1 False 1242 mRNA 0.49 4 14973352 14975399

Neighbor

gene id symbol gene type direction distance location
ccdc137 ccdc137 coding downstream 3875 14964295 ~ 14969477 (-)
btbd17b LOC103373589,LOC104944234 coding downstream 19079 14950264 ~ 14954273 (-)
LOC120575070 map2k6,LOC103373127,LOC100697168,LOC103392800,LOC102787166 coding downstream 23275 14936968 ~ 14950077 (-)
LOC120575176 NA coding downstream 98720 14869942 ~ 14874632 (-)
fscn2a LOC104925063,LOC104962304,LOC103373227,LOC101170272 coding downstream 225322 14740537 ~ 14748030 (-)
LOC120574429 LOC105009787 coding upstream 23374 14998773 ~ 15000144 (-)
baiap2a baiap2,LOC103361233,LOC100696811 coding upstream 69560 15044959 ~ 15100591 (-)
LOC120574279 LOC103361235,LOC100701199,LOC102782133,LOC102300456 coding upstream 126582 15101981 ~ 15106625 (-)
hs3st3b1a LOC104940293,LOC103361242,LOC104959450,LOC101483888,LOC100697618 coding upstream 358963 15334362 ~ 15346560 (-)
LOC120574947 rnf222 coding upstream 416339 15391738 ~ 15393203 (-)
G155039 NA non-coding downstream 9506 14963233 ~ 14963846 (-)
G155025 NA non-coding downstream 77728 14895379 ~ 14895624 (-)
G154948 LOC104962285,LOC104925065 non-coding downstream 308681 14627750 ~ 14664671 (-)
G155047 NA non-coding upstream 9735 14985134 ~ 14985364 (-)
G155106 NA non-coding upstream 181030 15156429 ~ 15162435 (-)
G155126 NA non-coding upstream 336681 15312080 ~ 15313592 (-)
G155151 NA non-coding upstream 392830 15368229 ~ 15404569 (-)
G155232 LOC104918633,LOC103356299,LOC102214648,LOC102291995,LOC101464722,LOC100701808 non-coding upstream 551550 15526949 ~ 15527605 (-)
ush1ga LOC104944226,LOC103373181,LOC103392806,LOC106949104,LOC104925058,LOC103140944 other downstream 83870 14879627 ~ 14889482 (-)
LOC120575102 fam104b,LOC103373210,LOC101470236,LOC107083185,LOC102083140 other downstream 115772 14851939 ~ 14857580 (-)
LOC120574214 bahcc1,LOC106528540,LOC108241329,LOC107083174 other downstream 145113 14795646 ~ 14828239 (-)
LOC120574213 NA other downstream 182574 14765734 ~ 14790778 (-)
LOC120574989 LOC108241285,LOC103373333,LOC106518659 other downstream 429358 14533682 ~ 14543994 (-)
LOC120573849 LOC106675063,LOC102783976,LOC102313472,LOC102290019,LOC102295680 other upstream 27614 15003013 ~ 15008712 (-)
LOC120573850 LOC106674513,LOC106098575 other upstream 34399 15009798 ~ 15010340 (-)
LOC120574278 LOC104940298,LOC103361237,LOC102197797,LOC102781856,LOC104946382 other upstream 131358 15106757 ~ 15139853 (-)
metrnla metrnl,LOC102778978 other upstream 467725 15443124 ~ 15449517 (-)
tecra LOC103367165,LOC101076261,LOC106932487,LOC104960308,LOC108241336,LOC106529633,LOC103151989 other upstream 742448 15717847 ~ 15724422 (-)

Expression


Co-expression Network