pglyrp6


Basic Information

Item Value
gene id pglyrp6
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2438102 ~ 2450469 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823842.1
GCCTCAGAGAGGACTGCCAGTGATTTGTACAGGCATGCAAGAGTTTGCTACTGGCTTACTTTAACTCCCAGGAGGTTGATTTCCCAAGCACCTGCCACATTCAGGACAACAAGCTGACTGagatttattacagaagttGTGAATTTCTCGAAAATGCCCGTTGTCCATCGCATAACCCTGGTGCGGTGAGGACAAACCACTCTACACTGACCACACAACGCAGGTGGCAGTTTCCCACATTGCTCAGCCGGGCCACGCCAACGACAAATTGAACGCAAGCGTATCTACAGTGTGTCTACAACAGTTGCATAACCACCCACTACTCTGCATGTGAACTGGTATAAATCAGGGAGAAGCAACCACACGGTAGCACACATTTGGAGAGCTTGGAGCTGAAGGTTTTCACGGCTCAGGATGGAAACAGGCGGCTGGAAATGGACGCTGGCTCTGGTTATGGTGTTGGTCGGCACGTATGCAGAAGCTTTATCTTCCCGACACATGGATGACTTCATCGAGGCGGTGAAGCAGGTGGAGGAGGGGTCACCGGGGTCAGAGCCGATAGCCGTGCTGCGAGCGCTGCGCCGGGCGGCCGGCCTCGACGACGCATTCATTCGGCACTTCCTCGGGAACGCCGATTCCGTCCGTCCTGAAATGAAGGCGAGCCTCTCCGCTTACATCGGCGAGGCTGTGCCTCACGGAGTGACTGAAAGTTCGGAAGAGGAAGGCGTGGTTCTGACTCCGGACGGCACCACTGTCGCCCTGGCGCCGGTGCTTCTGGGCATCGAGGCGGGCTTGCACGCCAAGGTTTCTGGCCGCGTGCGTACCAGCAGCCTGTACCAGCTCACTTTTGCCAAAGATCTGGAAAGCGCTGCTGTCACCGAGCGTCTGGGACCGGACGGCTGCTGGGACAGCGTCACTTCTCCGCGGGTCTTCACCCTCCTGGACAGCCCGTCTCTTCTCACCGCCGCTCAGGTCAACGGCGGCATGGACGGCGTTCTTCTAGGCGCGGAGGTCAACGCCAAATCCCGACGCGCCGCGAAGCTCAGCGACCTGCTGACCGACTACTACAGCCGCCAGCTGGGGAGCGAAGGACTGGATGGAGCCCCGACAATCGTCAGCAGGCGCCGCAGGGAGAACTTTAAGGCGCTGCTCGTTCCTCAGATGCTGGAGAGACAGCTGGTGAAATCGGTGGAGCTGCAGCGGAGACTGAAGGGACGCCCGAAGATGGAcgcgaagaagaagaaacagctgACGCGTGTGGTGAAAGAGAGAATCAAAGAGTTCGTCCATACGTACATGGattgccCCCCCATCATCCCTCGCTGTATGTGGGGTGCAGAGCCGTACAGAGGGACCCCCACCAAcctgtccctccctctctccttcatgTACAtccaccacacccacacaccgaGCCAGCCCTGTCTCACCTTCCAGCAGTGCTCGGCAGACATGCGCTCCATGCAGCGCTTCCACCAGGACGACAGAGGCTGGGACGACATCGGATACAGTTTCGTGGCGGGCTCTGACGGGAACATCTACGAGGGCCGAGGCTGGCTGCAGCGCGGCGCCCACACGCTGGGACACAACTCCATAGGCTACGGGGTGTCCTTCATCGGGGACTACGCCGCCACTCTGCCCTCCCAGCATGCCATGGGGCTGGTGAGAGATCAGCTGGCGTCCTGCGCCGTCGGGGGCGGCCGGCTGGTAGCCAACTTCACCGTGCAAGGGCACCGACAGGTGGTGAACACTTCCTGTCCCGGGGACGCTCTCTACAACGAGATCAGAGGCTGGGCACACTATGGGgaggtaaagaaatgaaaaccatcTGCTTGACAAGAGGAAGAGAGCCTTGAATAAACCAGATACACAATC

Function

NR:

description
N-acetylmuramoyl-L-alanine amidase-like

GO:

id name namespace
GO:0009253 peptidoglycan catabolic process biological_process
GO:0042742 defense response to bacterium biological_process
GO:0008745 N-acetylmuramoyl-L-alanine amidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01446 PGRP; peptidoglycan recognition protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823842.1 True 1875 mRNA 0.59 6 2438102 2450469

Neighbor

gene id symbol gene type direction distance location
si:ch211-194b1.1 wiz,LOC107731472 coding downstream 4882 2355442 ~ 2433220 (-)
LOC120573916 LOC103358683,LOC104942087,LOC104930238,LOC103393647 coding downstream 213134 2214594 ~ 2224968 (-)
ilf3b ilf3,LOC102795819 coding downstream 228845 2164720 ~ 2209257 (-)
LOC120574768 LOC103358687,LOC104930242 coding downstream 379463 2004876 ~ 2058639 (-)
LOC120574288 LOC108233705,LOC103393603 coding downstream 791033 1620674 ~ 1647069 (-)
LOC120574080 gfi1,LOC102083319,LOC102796239,LOC103376798,LOC101077887 coding upstream 287466 2737935 ~ 2750253 (-)
si:ch211-106h11.3 LOC103375031 coding upstream 350913 2801382 ~ 2820321 (-)
LOC120574018 NA coding upstream 389964 2840433 ~ 2842813 (-)
trir csgr03h19orf43,clg4h19orf43,LOC103154935,LOC107087651,LOC103376077,LOC102224489 coding upstream 549181 2999650 ~ 3003392 (-)
hook2 LOC103364969 coding upstream 557620 3008089 ~ 3035012 (-)
G151153 NA non-coding downstream 18393 2419425 ~ 2419709 (-)
G151141 NA non-coding downstream 69785 2367470 ~ 2368317 (-)
G151134 NA non-coding downstream 84544 2352058 ~ 2353558 (-)
G151139 NA non-coding downstream 87086 2350000 ~ 2351016 (-)
G151053 NA non-coding downstream 130849 2306901 ~ 2307253 (-)
G151149 NA non-coding upstream 21941 2472410 ~ 2487633 (-)
G151169 NA non-coding upstream 24690 2475159 ~ 2490191 (-)
G151170 NA non-coding upstream 32821 2483290 ~ 2581494 (-)
G151177 NA non-coding upstream 66268 2516737 ~ 2517016 (-)
G151179 NA non-coding upstream 97246 2547715 ~ 2567603 (-)
farsa farsa other downstream 276378 2132732 ~ 2161724 (-)
LOC120573864 NA other downstream 566010 1845740 ~ 1872092 (-)
LOC120573867 LOC108236047,LOC107376309,LOC101475947,LOC100695382,LOC106520692,LOC105918010 other downstream 615974 1816065 ~ 1822128 (-)
G150856 NA other downstream 698621 1724122 ~ 1739481 (-)
LOC120574287 col1,LOC108233705,LOC103393603,LOC106536191 other downstream 817631 1606215 ~ 1620471 (-)
G151216 LOC106957010,LOC107376217,LOC103393680 other upstream 423449 2873918 ~ 2896343 (-)
G151227 LOC103393680 other upstream 460857 2911326 ~ 2915367 (-)
G151344 smarca4 other upstream 861258 3311727 ~ 3316915 (-)
LOC120575464 NA other upstream 1911379 4361848 ~ 4367343 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other upstream 1965708 4416177 ~ 4464991 (-)

Expression


Co-expression Network