LOC120573930 (LOC103363959,LOC101479828,LOC102300806,LOC102197709)


Basic Information

Item Value
gene id LOC120573930
gene name LOC103363959,LOC101479828,LOC102300806,LOC102197709
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 1520386 ~ 1543410 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823845.1
GGAGAGCAGTGGTGACTCTGCACATCGGGGCTTAAATGAAAGAGGATGCATGGAGATCTCAGACAGCTGGCAGGATTATTCATCCCTTTCTTCCACAGAGTGTCCTGTCTGCAGTCAGGGCGCTTCCTCCTGAACCAGCAGCATCATGGGAGGTTCCACCTCCTCCCTCGTTGACGAGGCCGAGGGTGATGATGCCCCCCCCAGGGGTGCAGCTCTGCCCCCATCCCCCATCATGGGATGTCTGAGGAGCAGCCAAAGCACCTCCCTCCCTCGGCAGACCCACAGACCCAGCAGGCACAGAGAGCGCAGTTTCTCCTCCGGCTCGATGCCGATGCAGCGGAGCCAGTGGGCTTGTGTCTGTTGCACTTTCCTCAATGCAGCAGGCGCCCCCCGCTGCTCCATCTGTGAAGCCCCTCGGCGGAGACCCGACAGCCACGCACAGTGGATGTGTCAGGGGACCAGCAAGGAGGAAGTTCGCTGGTCCTGCCCGCGCTGCACGCTGGCCAACCCCCCCGACAGCCTGGCCTGCTCTCTGTGCGGCCACGCTGGCACTCTGGAGCGCCTCCGGGGGTCATCTGAGGTCCAGCCTCGGCCTCAGCGCTCCAGCAGTTGCTCCGGTCCCCTGAGGCCATCATCCGCTGAAAAACAGCCGGAGGATGTCGTTATAAACAGCCTGGTTTGGGAGTGTTTGAGGTGCACTCTGCAAAACACCCCTACCTCCATGTCCTGCTCTGCGTGTGGCGGACCACGCAAACTGTCTCTCCCCCAAATCCCCACCGACGCTTTGCTCATGCCTGAAGATCAAACGGGAGTACAGCATCCAGAGCCGGCGGCCGGAGCGCTGTCCCTTTCCATTTCAACCAGAGGAGACTGTTTACCCGTAGAAGCTTCGTATTCAAACACAAGCGTAGCGTCTTCAGGTCATAATAACCCTCTCCCCTGCAGCCGCAGAGAGGTGCCACCTCCAGAAGGTTGCCTCAGTCAAACTCAAAATTTAAGTCTGTCTCCGTCCACGCTCGCTGTCTCGCATCTCTCTGCCCAGCCGGAGCTGCTGGCCGGCCGACGGCTCAGCATCCTGAAGGAGGAAATGTCCCCACTGTCCCCTGCACCGGATGCCTCCGCATCGTTCCCGCCGTGTGTCATCCCCGTCAACAGGCCGGTGGAGGAGGAGTGGTCGTGTCCGGCGTGCACTCTCATTAACGAGGTGAAAGCCAAACACTGCGTGGCGTGCCACACTCCTCAGCGACACGCGGCGCAGCTGAAAGCCACGTTGTGCTCCAGGAGGAAGGAGAGCATGCTTGTGGAGGTGCTGCGACAGAGCGATGAAGGAGAGGCCAAAAAGCTGTGGGAGAACATCGTCAGCTTCTGCAGAGAGAACACCGTGACGTTTGTGGACGACAGCTTCCCTCCTGGTCCGAAGTCCGTGGGCTTCCCAGTAGACGACAGCGTCCAACATCGTGTCAGAAAGTGGCTTCGCCCTCGAGAAATCAACAGCTGCAACTTCAGAGACCGCGCGGTGAAGTGGTCTGTTTTCCGCACGCTTCGGCCATCCGACATCCTGCAGGGGCTTCTGGGTAACTGTTGGTTCCTGAGTGCCTTGGCTGTTCTGGCTGAACGTCCTGAGCTGGTGGAGAAAGTGATGCTGACACGCTCGCTGTGTGCTGAAGGAGCATATCAGGTGCGTCTGTGCAAAGATGGCTCATGGACCACAGTGCTGGTGGACGACATGCTGCCATGTGACGAGAGCGGCCACCTCCTCTTCTCTCAGGCCCAGCGGAAGCAGCTCTGGGTGGCTCTGATTGAAAAAGCTCTGGCCAAGCTGCACGGCTCCTACTTTGCGTTGCAGGCAGGTCGCGCCATCGAGGGTCTGTCCACGCTGACCGGGGCCCCCTGCGAGTCACTTGTCCTCCAGGTCAGCGCCACAAACCCCAAAGAGGAACCCATCGACACAGACCTCATCTGGGCCAAAATGCTGAGCTCCAAAGAAGCAGGTTTCCTGATGGGGGCGTCGTGTGGAGGAGGGAACATGAAGGTGGATGACTCTGAGTACGAGTCCCTGGGTTTACGTCCACGACATGCTTACTCTGTCCTCGATGTGAGGGACGTAGACAGTCACAGGTTACTGCAGCTGAGAAACCCATGGGGCCGCTTCTCCTGGACTGGCAGCTGGGCGGACGACTGGCCAAACTGGCCTCCACACCTGAAGAGGGAGCTGTGCGCCCAGCGAGCCGAGGACGGCCTGTTCTGGATGGACTTCTGGGATTTTATCAGGTACTTTGACTCAGTGGATATCTGTAAGATTAACTCCGACTGGCACGAGGTGCGAGCGCCGGGCATGTTCCCCCGAGGAGCCAACGTCCCGGTGACGCTGGTGTCTATCACAGTGCTGGAGAGGACGGCCATGGAGCTGGCTCTATTCCAGCAGGGCAGCAGGCGATGGGACACGGCAGAGAGCCACCTGCTGGATTTGTGCGTGTTGTTGTTTCGGGTGTCCTATGACAGATCGGGGGCGCCGACGCTCGGCCGCGTGCTGGCTCACAGCCGCCGCTCGGTGAGGAGGTTTGTGGGCTGCGACGTGATGCTGGAGCCGGGAGAATACGCTGTGCTCTGCTGCGCCTTCAACCACTGGCACAGCGTTGGCACGGAGGCAACCAcGAGCTGCAGTGGATCAGAGGAGCCCGGTTACATGCTGGCAGTCTACAGCTCCAGACTGGTGATGGTGGAGACGGTCACAGCCTCCAACACCACCATCGCCGACGCTGTCATCCAGCTGACGGAAACCAAAGGAGACAGACACGAGGGTCGAGAGGGGATGACCTGTTACTACCTGACGCACGGCTGGGCGGGGCTCATCGTCATGGTGGAGAACAGACACCCGAGACATCACCTCCATGTGTCATGTGACTGCAGCGACAGCTTCAACGTTGTGTCGACACGCAGCAGCCTGAAAACCATCGACAGCATCCCTCCTCTGCACAGACAGGTGCTGGTGGTTTTGTCTCAGCTGGAGGGAAACGCTGGGTTCTCCATCACACACCGGCTGGCTCATAGAAAGGCTGTCCAGGCTTCTCTGGGGAACTGGAGTCCCTCGAAGGCAACACACAGTCCTGCCCTGAGCCCGGAGACAGCAGGTCTGCATCAGCCACGACCCCTCTGATGGGAACACAAAAACTggttcacacacaaaaacatgagaTCTCAAGATGGAGGAAGCTTCTTTAAAGGAACCACCCAAGGgtgttttcacacctatagtttgttTCCTCTGGTCtgaatcagttgatgagtttgtaaacttggagcaaTTCCCCCATAGGTTCAGATTTGTCTCACATGGAGAAACATTCaagtgaaataaaatgcatCACTACAAATCACGCAAAAACGTTCACTCCGGATGGTCGGATGTGTCAGGGAGCGGGAGCAAGAAAGAAAtgcaggaagaaggtcctgtgttctccATGGGCAAACCAGCCCATTTCATTTGACTAACCAGACATTGTGTCTGCTCTGCTCACCGAGACTTCGTTCTGCTCTGCTGGTGTCTGTCTCCATCTTTagctgcagctgctgtgacCACCGAGATGCGAGTGACTGCGAGCTTGAGTGCAGTctgtttctgtgagagaaacattaAAGCTGCTAGGTTTGCTGCTTTGCCGTGTTGCagattgctaaacacacctgactacaggagacatcagctaAAACTTGCAGAGTATACATAGTTGTGGCGGTTAGAGGTCGGGTCAcgttctcacctgcccaaacgaactGAACCAAGCGGGGAAACCAACTCTAGTGTGATTCAACTGAACTAAACCAGGCGGGTGGGAAACCTCGCCAACTCTAACCGAGTTGTGCTTGTTTGACTCATTCGACTGTTGATGGAAAACTGGCACGTCTTCCTTTTACATTTTGAACTATCAAAGATAGTAAAGATACATCCTGTACAGCGAGCAGTCAGACGGAGTCGGAGCTCCTCAGAGACAGAAATAATCTCACTGGTTGAATGAAACCTCAATGGGCAGAACAAAACAGCCACAAAGCTTTATATGGCTACGTTAGGGTACACAGTTAGGACAATAGAGAGGTGGAACATCATTGTTCATAGGGACTATTTCTTTGGTTGAAAGTAATAGTCCATTCATTGATTTTTCTGATATCAGTGGTTTGTTCCTctcctctaatacgacccacaggagagtTTTCCGACCTCATATCTAGACCAGAGAAGGGAACGGTCGCGGTTTTAACGTTGCGTTTCATTTACCTCGGAGCTCGGAAGccgaagctgggaatgacgtcgcacccgagttgaatgcgttccatttaaAAGTctgatttcattgtttttagCTCTAGGCAGGTTAGCCAGTGTTAGCAATTGGGGTACTCGATGGTTATCTGAGTTCCGAGCTCGGGGGGTGTGTTTCCGACATTGACTTCACAAAATCAGAATTGCGAGTATAAATGGAACGCATTATAAACACCtagttaacgttgtgaaacagtcccagtttggttaggtttagacaccaaaactacttagttaagtcgataaaaaagatggaggtttgggttaaaatcagacgtgacttcacttcctgaaggttaccatGGAGACCCAGAACGTGACGTTTAATTAGAAAAACTCTCTTTGTGAGAAACACTGGAAGCCAGATGGTCAATACCTGTGTGATGCCTCACAGATCCAGAAACATCCCTTAAAgagacttaaagtgctcatattatgctttttggcttttcccctt

Function

NR:

description
PREDICTED: calpain-15-like

GO: NA

KEGG:

id description
K08582 CAPN15; calpain-15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823845.1 True 4775 mRNA 0.55 13 1520386 1543410

Neighbor

gene id symbol gene type direction distance location
LOC120574716 LOC102301616,LOC103363960,LOC100701445 coding downstream 11274 1500772 ~ 1509112 (-)
LOC120575499 NA coding downstream 75063 1429165 ~ 1445323 (-)
LOC120573831 hspa6,LOC100700083 coding downstream 123918 1392492 ~ 1396468 (-)
taok2a LOC103363962 coding downstream 136658 1341826 ~ 1383728 (-)
cdipt cdipt,LOC103363963 coding downstream 185960 1325679 ~ 1334426 (-)
LOC120574288 LOC108233705,LOC103393603 coding upstream 77264 1620674 ~ 1647069 (-)
LOC120574768 LOC103358687,LOC104930242 coding upstream 461466 2004876 ~ 2058639 (-)
ilf3b ilf3,LOC102795819 coding upstream 621310 2164720 ~ 2209257 (-)
LOC120573916 LOC103358683,LOC104942087,LOC104930238,LOC103393647 coding upstream 671184 2214594 ~ 2224968 (-)
si:ch211-194b1.1 wiz,LOC107731472 coding upstream 812032 2355442 ~ 2433220 (-)
G150776 NA non-coding downstream 107 1519958 ~ 1520279 (-)
G150775 NA non-coding downstream 480 1519690 ~ 1519906 (-)
G150765 NA non-coding downstream 32072 1485602 ~ 1488314 (-)
G150764 NA non-coding downstream 38413 1481743 ~ 1481973 (-)
G150763 NA non-coding downstream 49153 1470830 ~ 1471233 (-)
G150855 NA non-coding upstream 45358 1588768 ~ 1589308 (-)
G150863 NA non-coding upstream 46014 1589424 ~ 1738607 (-)
G150858 NA non-coding upstream 47262 1590672 ~ 1843537 (-)
LOC120574250 col1,LOC108233705 non-coding upstream 66250 1609660 ~ 1610464 (-)
G150861 col1,LOC108233705 non-coding upstream 66410 1609820 ~ 1617671 (-)
LOC120575421 LOC106675350 other downstream 55078 1461342 ~ 1465308 (-)
LOC120575422 LOC106675350 other downstream 59405 1456747 ~ 1460981 (-)
LOC120573832 maz,LOC101481851,LOC103375157,LOC102304652,LOC101067998,LOC105024369,LOC102195162 other downstream 198353 1302340 ~ 1322033 (-)
G150705 NA other downstream 280396 1238242 ~ 1239990 (-)
G150694 NA other downstream 346363 1170045 ~ 1174023 (-)
LOC120574289 NA other upstream 48279 1591689 ~ 1739925 (-)
LOC120574287 col1,LOC108233705,LOC103393603,LOC106536191 other upstream 62805 1606215 ~ 1620471 (-)
G150856 NA other upstream 180712 1724122 ~ 1739481 (-)
LOC120573867 LOC108236047,LOC107376309,LOC101475947,LOC100695382,LOC106520692,LOC105918010 other upstream 272655 1816065 ~ 1822128 (-)
LOC120573864 NA other upstream 302330 1845740 ~ 1872092 (-)

Expression


Co-expression Network