dcaf7 (dcaf7,LOC100702343,LOC105030232,LOC105898766)


Basic Information

Item Value
gene id dcaf7
gene name dcaf7,LOC100702343,LOC105030232,LOC105898766
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 21610676 ~ 21615103 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823866.1
GCATGTGTTTTGTTGAACGTGACAGCACTTTGGATCGTAACGGGAAATGCTACTCTTTGTTAAGTAAAGTGGTGAGAAGTCTTGCTCCAAAACAAGATTTATTTAATCAAATGGTAATTAGTACCACACCTGCTGAGATTTGTCATAGCAGGTTAAAGTAGCGGGTTAGAGTTGACTTGCACGACTACTTATTTTGCAGTTAGCTGACGCTAGCGTGTTAGCTGCTCGGACAACAGCTGCAGTTCGAGAGGATGTCGCTTCAcggcaaaagaaaagaaatctacAAATACGAGGCACCATGGACGGTGTATGCGATGAACTGGAGCGTCCGTCCAGACAAACGCTTTAGGCTAGCTCTTGGGAGCTTTGTGGAGGAATACAACAACAAGGTTCAGCTCGTGGGTCTGGAAGAGGAGAGCTCAGAGTTCGTCTGCAGGAACACATTTGACCACCCTTACCCCACCACCAAGATCATGTGGATCCCAGACACTAAAGGGGTGTACCCGGACCTGCTTGCCACCAGTGGGGACTACCTGCGCATTTGGAGGGTCAGCGACACAGAAACACGTCTCGAATGTTTGCTGAACAACAACAAGAACTCAGACTTCTGTGCTCCCCTCACATCCTTTGACTGGAATGAGGTTGATCCCAATCTGCTGGGTACATCCAGCATTGACACCACCTGCACTATCTGGGGGTTGGAGACTGGTCAGGTGTTAGGGCGCGTTAACCTGGTGTCTGGGCATGTGAAGACCCAGCTGATTGCTCATGACAaagagGTGTATGACATCGCGTTCAGTCGTGCAGGAGGCGGTAGAGATATGTTTGCCTCTGTGGGAGCCGATGGATCCGTCCGCATGTTTGACCTCCGGCACCTGGAGCACAGCACTATCATCTATGAAGACCCCCAGCACCATCCGCTGCTCCGCCTCTGCTGGAACAAGCAGGACCCCAACTACTTGGCCACAATGGCCATGGATGGCATGGAGGTGGTCATCCTGGATGTACGTGTGCCTTGCACTCCGGTGGCTCGGCTGAACAACCATCGTGCATGTGTCAACGGCATCGCCTGGGCCCCTCACTCGTCATGTCACATCTGCACTGCAGCCGACGACCACCAGGCTCTGATCTGGGACATCCAGCAGATGCCACGCGCCATTGAGGATCCCATCCTGGCCTATACTGCTGAAGGGGAGATCAACAACGTGCAGTGGGCCTCCACGCAGCCGGATTGGATCGCCATCTGCTACAACAACTGCCTGGAGATCCTGCGTGTCTAAAGCCAAAGACACTTAGATGAAGAGAAGCTCCTTCTTGTTTCACATTTGGATTTAATTAGTCCTCGTCCTGCTGCTTTCAAGACAAGGATGTGGTCACGAGTGAACTTTCTGAACACGTTTggagtatcacacacacacacgcttcacaATAACCTGGTTTACACGTTCTCCTATTGTTCTTctattaaaaacatgtttaagtgcttatttattttgctGACAAGGTAGTGTTCAGAAGCTTTGAGCAATTGTCTATGAAAATCAGATTTTGATACTTTTTGGTGGGATTTCAGCCAGCTGTGAGATTATCATGAAGGGTTTAGATGTGTTTCATGGGTTTGAGTTGTAAAGGTTGATACAAACTACTGTGGGTGGCAGAAGATGACCTCTCTGATGCAATATGTCGTAGCCTTCTTGTGGACTCCTACCATATTATTGGTGATTCAAAGATCAGTGTATTATGGTCTTGTTTACCcctgtatattttttaaaatgggTGTATGTCCAGTATCCTCCCTCCAAATGATCAAAGGTCAGACCTGTGCAACTTTTATAAATTGTAGAATAACCTGAGAGGGATTCGTATTGTCACCTCAGTGGTGTCATCATATGGTTTGGCCGGTGACGCTGTGAGGCAGCCATGTACAGCAACACTCAGAACCTACCAGAGCAATGTCGTTCAGCCTTTTTAACTCCCAGCGTATTCTCTTCTATTTGTAGAAGATTGAGCTTTGAAAGCTgcattttcttttgtgtttaGAGTGAGTTGTGAATGGGAGGAGCGTGAAAgaacttttctcttttttttttttttttttttttcaataattgaAGGGTCATGTCCTTGTAGCATGCAATTACAAGGCAAAAACTGTACAGGCATAAATATATCAACTCAAGATGTTGGTAAGACAAGTGTTCATGTTGTAGCTTTTTTCataaagtttattattgaatTTGCTCTAATAAATCGTATTCCTTTATGTCCTAGGAACAAA

Function

symbol description
dcaf7 Acts upstream of or within cartilage development and embryonic viscerocranium morphogenesis. Located in nucleus. Is expressed in forebrain; head; hindbrain; and somite. Orthologous to human DCAF7 (DDB1 and CUL4 associated factor 7).

NR:

description
PREDICTED: DDB1- and CUL4-associated factor 7

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11805 DCAF7, HAN11; DDB1- and CUL4-associated factor 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823866.1 True 2278 mRNA 0.46 7 21610676 21615103

Neighbor

gene id symbol gene type direction distance location
trnac-gca_31 NA coding downstream 6240 21604365 ~ 21604436 (-)
strada strada coding downstream 97275 21501199 ~ 21513401 (-)
rundc3aa LOC103357380,LOC101465462,LOC104930217,LOC100703962,LOC102776052,LOC102192765 coding downstream 111908 21482945 ~ 21498768 (-)
fam117aa fam117a,LOC102291926,LOC102800024,LOC103357381 coding downstream 128954 21473165 ~ 21481722 (-)
slc35b1 slc35b1 coding downstream 138426 21465792 ~ 21472250 (-)
mylpfa mylpf,LOC107378514 coding upstream 65769 21680872 ~ 21685688 (-)
pheta2 LOC103367340,LOC104943744,LOC104930231,LOC103392672 coding upstream 75592 21690695 ~ 21694802 (-)
si:dkey-66i24.7 LOC102077857,LOC102782865,LOC102307613,LOC101474966,LOC103367331,LOC104934487 coding upstream 128983 21744086 ~ 21746426 (-)
LOC120575109 NA coding upstream 163544 21778647 ~ 21785262 (-)
LOC120575110 NA coding upstream 171103 21786206 ~ 21789638 (-)
G156989 NA non-coding downstream 115561 21467195 ~ 21495115 (-)
G156985 NA non-coding downstream 147996 21461520 ~ 21462680 (-)
G156934 NA non-coding downstream 284275 21326114 ~ 21326401 (-)
G156932 NA non-coding downstream 286181 21324237 ~ 21324495 (-)
LOC120575152 NA non-coding downstream 357112 21170204 ~ 21253564 (-)
G157065 NA non-coding upstream 19686 21634789 ~ 21635593 (-)
G157075 hsd3b7 non-coding upstream 50347 21665450 ~ 21667398 (-)
G157081 cd2bp2 non-coding upstream 79828 21694931 ~ 21698789 (-)
G157092 NA non-coding upstream 112092 21727195 ~ 21729411 (-)
G157135 NA non-coding upstream 206519 21821622 ~ 21831111 (-)
ndufa4a LOC101066870,LOC103357383,LOC101155111,LOC107378524 other downstream 145599 21463207 ~ 21465077 (-)
LOC120575154 spop,LOC102792310 other downstream 217929 21333409 ~ 21392747 (-)
selenow2a LOC102798572 other downstream 501883 21105860 ~ 21108793 (-)
atxn7l3a atxn7l3 other downstream 539169 21064760 ~ 21071507 (-)
hexim1 LOC104946860 other downstream 1309730 20299024 ~ 20300946 (-)
G157034 NA other upstream 5927 21621030 ~ 21622961 (-)
LOC120574354 NA other upstream 99911 21715014 ~ 21718729 (-)
G157096 LOC102782282,LOC100692966,LOC103367351,LOC107084765,LOC104927186,LOC102201015 other upstream 119279 21734382 ~ 21740703 (-)
LOC120575106 LOC103367329,LOC107658449,LOC107564019,LOC107674165,LOC104934486 other upstream 139638 21754741 ~ 21756191 (-)
G157147 cdhr2 other upstream 233992 21849095 ~ 21856016 (-)

Expression


Co-expression Network