LOC120573949


Basic Information

Item Value
gene id LOC120573949
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11289866 ~ 11293711 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823867.1
TGGTTGGTGGTGTGGGTGAAAACACATTTCCTACTGAAGAGTTCAGACTTCAAGTGCACCTTTGTGTGACAGTCACTGTCAGCATGTCTGCTGTCTGGTTAAAGCTCCTAAGCCTCCTTACTATCCTCTCCTGCCCAGCCATGAATGGCCTAGTGAGCAGTGAAGTGATATGGAGAGATCTTGGAGAAGCAGTCACTATCCAGTGCAGACCTTCCAAACCAAATCAAGGCCAAGAGTACCTGACTCTGAAAAAGGGTCTCAATGAGGAGTATGATGTTTTGTACAAAGATGGcaagtcagaaaaaaacaccATTCACCCAAAATTCAAGGGCAGACTTCAGCTAAATGGAGTATTCCCCAAAGTGGACATTCTCATCAAAAACTTGACCTCTAATGACACAGGACCGTACTGGTGCGTGTACAAGAAGTTTGACGTGGTGTTCAGTAAAACCCTGGAAATGAAAGGCACAGGGTCTGTTCTCCTGTTGGTGGCAGGTGGTCCTCAGCACGATTCAATATGTGAACCATCAGACAATAATCTGGTCCTGGTAATTGTTGTGATCTGTGCTGCGCTGCTGGGCATCATTGTGTGCTTCCTCATATGGATCATCCTTAAGACCAAAACTACCAAAAGGCGCACCAAAATGAAACCGAGGAACGTCACCAACAATGATGTTTATGAGGACATGCGTGGAACAATCAGACGCGCTAAAGATGTCAGCCTGCACGCAAGCAACCTGAAACTCCACCATCTCTCTGCACCACTAAGATGCAAGTTATGCATGAGGAGCAATGTTGCAACTCAGCATATTCTCTGTAATCTATTCTGGCCCTCTGTGTGTCTGGCTGAAAGACAGTTAAGAAAATAAAGTCTATGAATTGCTAAAAGGTACAACATGGGAACACCTGCGCTGCCAATGAACAACCGGCACAACTGGCACAAAAAATACATAACACAACCCTGAAAGTATAGAGAAGTACAAATGTCTTGTCTGGATTGTACTGATATGAGGCCCtgacatgtacagtatttgttatGTAAATATGTCTTCTTCAGTAattttgtatacagtattttTGTACAATGTGATGATTAGTTGAAAAGAAAGGCAGGATTAACTTGCCATATAAGATAAATACTATGTATTGTGATTatattaactgtaattatgtgtCTACATGAATAAAACAATACCTTAATACCA
>XM_039823869.1
GGATTTATATTTGATATGAAACGTTTCTTATAATCACTGTTAGCATGTCTGCTGTCTGGTTGAAGCTGATAACCATCCTTTGTCTCTCCTGCACAGCCCTGAGTGGCCCAGTGAGCAGTGAAGTGATATGGAGAGATCTTGGAGAAGCAGTCACTATCCAGTGCAGACCTTCCAAACCAAATCAAGGCCAAGAGTACCTGACTCTGAAAAAGGGTCTCAATGAGGAGTATGATGTTTTGTACAAAGATGGcaagtcagaaaaaaacaccATTCACCCAAAATTCAAGGGCAGACTTCAGCTAAATGGAGTATTCCCCAAAGTGGACATTCTCATCAAAAACTTGACCTCTAATGACACAGGACCGTACTGGTGCGTGTACAAGAAGTTTGACGTGGTGTTCAGTAAAACCCTGGAAATGAAAGGCACAGGGTCTGTTCTCCTGTTGGTGGCAGGTGGTCCTCAGCACGATTCAATATGTGAACCATCAGACAATAATCTGGTCCTGGTAATTGTTGTGATCTGTGCTGCGCTGCTGGGCATCATTGTGTGCTTCCTCATATGGATCATCCTTAAGACCAAAACTACCAAAAGGCGCACCAAAATGAAACCGAGGAACGTCACCAACAATGATGTTTATGAGGACATGCGTGGAACAATCAGACGCGCTAAAGATGTCAGCCTGCACGCAAGCAACCTGAAACTCCACCATCTCTCTGCACCACTAAGATGCAAGTTATGCATGAGGAGCAATGTTGCAACTCAGCATATTCTCTGTAATCTATTCTGGCCCTCTGTGTGTCTGGCTGAAAGACAGTTAAGAAAATAAAGTCTATGAATTGCTAAAAGGTACAACATGGGAACACCTGCGCTGCCAATGAACAACCGGCACAACTGGCACAAAAAATACATAACACAACCCTGAAAGTATAGAGAAGTACAAATGTCTTGTCTGGATTGTACTGATATGAGGCCCtgacatgtacagtatttgttatGTAAATATGTCTTCTTCAGTAattttgtatacagtattttTGTACAATGTGATGATTAGTTGAAAAGAAAGGCAGGATTAACTTGCCATATAAGATAAATACTATGTATTGTGATTatattaactgtaattatgtgtCTACATGAATAAAACAATACCTTAATACCA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05310 Asthma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823867.1 True 1205 mRNA 0.42 4 11289866 11292294
XM_039823869.1 False 1163 mRNA 0.41 4 11289866 11293711

Neighbor

gene id symbol gene type direction distance location
LOC120574065 NA coding downstream 26145 11172521 ~ 11263721 (-)
LOC120574485 NA coding downstream 205293 11081719 ~ 11084573 (-)
c15h17orf75 clg4h17orf75,clg8h17orf75,LOC102789701,LOC101467397,LOC102229770,LOC106934014,LOC106960136 coding downstream 226016 11057892 ~ 11063850 (-)
LOC120574053 LOC104934592,LOC103360693 coding downstream 273275 11008642 ~ 11016591 (-)
rln3a LOC104944611,LOC103360695 coding downstream 295836 10988167 ~ 10994030 (-)
LOC120573873 hn1 coding upstream 5496 11299207 ~ 11309655 (-)
LOC120573874 sumo2 coding upstream 16967 11310678 ~ 11318550 (-)
gga3b gga3 coding upstream 34558 11328269 ~ 11338111 (-)
mif4gdb mif4gd coding upstream 47546 11341257 ~ 11347860 (-)
LOC120574850 LOC104918874,LOC100703643,LOC101483703,LOC106903613 coding upstream 68168 11361879 ~ 11410495 (-)
G154036 NA non-coding downstream 17018 11271819 ~ 11272848 (-)
G153987 NA non-coding downstream 216090 11069043 ~ 11073776 (-)
G153943 LOC104934589,LOC102791985 non-coding downstream 254350 11033206 ~ 11035516 (-)
G153950 NA non-coding downstream 330345 10950571 ~ 10959521 (-)
G153937 NA non-coding downstream 382258 10905355 ~ 10907608 (-)
G154088 NA non-coding upstream 58492 11352203 ~ 11352565 (-)
G154115 NA non-coding upstream 173197 11466908 ~ 11467112 (-)
G154163 bri3,LOC104946088,LOC103141671 non-coding upstream 235985 11529696 ~ 11557733 (-)
G154173 NA non-coding upstream 346317 11640028 ~ 11641512 (-)
G154175 NA non-coding upstream 349406 11643117 ~ 11649924 (-)
G154033 NA other downstream 64320 11203450 ~ 11225546 (-)
tnrc6c1 LOC103361861 other downstream 152338 11098316 ~ 11137528 (-)
LOC120574486 NA other downstream 209259 11078545 ~ 11080607 (-)
LOC120574455 NA other downstream 498301 10784112 ~ 10791565 (-)
gtpbp1 gtpbp1,LOC104924447,LOC102799794 other downstream 899690 10352158 ~ 10390176 (-)
LOC120574419 NA other upstream 792274 12085985 ~ 12090981 (-)
cep112 NA other upstream 1133793 12427504 ~ 12565471 (-)
LOC120575506 LOC100697827 other upstream 1441733 12735444 ~ 12737483 (-)
iqck NA other upstream 1661263 12954974 ~ 12972829 (-)
sun1 sun1,LOC104947709,LOC102193096,LOC103360714 other upstream 1679549 12973260 ~ 13012781 (-)

Expression


Co-expression Network