LOC120574080 (gfi1,LOC102083319,LOC102796239,LOC103376798,LOC101077887)


Basic Information

Item Value
gene id LOC120574080
gene name gfi1,LOC102083319,LOC102796239,LOC103376798,LOC101077887
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2737935 ~ 2750253 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824144.1
GTACAGCCGACTAAACCTTCAGCGAATACAGAGCAAAATCTCTGTTTTTATAGACTTTTCCTGTCAGAAGAAGGGTAGCAAAAGAGGTAACACCCCCAAAATTGATTAAAACAGGGAggatattttgagatattcatttttaaataatgtttttttttattatcttgtaATTTCAATTAATTTGGGAGCATTCTTTTCTGCCCCTCCAATGCCTAAAGTCCCACAATCCTCAGCAGTgtttcaaaatcaaataaaatctCTTTGTGTCATGTCATCAGTTGATGggtgtgagaaagagaaaagaggacgTTGCCAGCAAACGAGGACACACAAGAAACACTCAACATTCAGCTGTGCAATACAGAGTCAGCGCTCAGTCTGCCATGCCGCGGTCGTTCCTCGTCAAGAGTAAAAGGACTCATGTACTTGGCTCATCTAAGGACTTCTATAGACGACATTCCCAGCCCCAAACAGACGCCCACCAGCCTGTGCAGCATGCGATGGGACAGGACAGGAGGTGTCCGGAAGATGTTGTGCAGCCTTTGTACCCCATGTTAGGGGTCAAAGAGCGTCTGGCTGAAGCCAGCTCACCGTGGGACGGGATGGCAGTCCAGTCTCACTCTGCCCCCACAAATGAGCTTTGGCCTTCAGCCCCTGTGGAGAACAGAGACGCTCCTCTGCCGTTCTCGCCTTGGACGGCGGACAAACACCCGGCatctgaaagagagagacacctGGAGCGACTGGTCTTCATGTTAGTCAACCACACATCGCACACTGACCTCAAATCCCCTGTCAGCGAGTGCCCGCTCTGTGAAAAGTCTCTTTCAGAAGTGTTACTATCAGGAGGTGGCCTGCAGGCTTATCTTCACAACACCCTCTCCGTCCCATTGACCAGATCCCCAACTGCCAGCGACATGCCGTTTGGCTTCAGGGCACTAAGCAGCTACGGTAGAGCTAAGGACCGTAGCTTTGGCTGCAAGGTGTGTGGAAAGGTGTTCAAGCGCTCGTCCACCCTGTCCACACACCTCCTCATCCACTCAGACACGCGGCCTTACCCCTGCCAGTACTGCGGGAAAAGGTTCCACCAGAAGTCAGACATGAAGAAACACACCTTCATACACACAGGGGAGAAACCACACGTGTGCAAGGTGTGCGGTAAAGGATTCAGCCAAAGCTCCAACCTCATCACCCACAGCCGAAAGCACAGCAGCTACCGGCCGTTCAGCTGCCCCCGCTGCAAGCACAGCTTCCAGCGCAGGGTTGACCTACAGCGCCACCAGCAGATGCAGTGCAGCTATGAAGACATGTACACTCAACAGTCCATGAAGCAATGAAGTGATGgcattttttgtaaataatgCTCAATCATTCATACTTGTAAAAGTCAGAAGAATATGCATATCATGACGTCTCTGCAACGTAAATATCAATAAAATTGTGTATGAATGTTA

Function

symbol description
gfi1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and transcription cis-regulatory region binding activity. Involved in several processes, including cellular response to lipopolysaccharide; negative regulation of cellular biosynthetic process; and regulation of signal transduction. Located in nuclear body and nuclear matrix. Part of transcription repressor complex. Implicated in acute myeloid leukemia and severe congenital neutropenia 2. Biomarker of leukemia and myelodysplastic syndrome.

NR:

description
PREDICTED: zinc finger protein 675

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824144.1 True 1454 mRNA 0.49 6 2737935 2750253

Neighbor

gene id symbol gene type direction distance location
pglyrp6 NA coding downstream 287466 2438102 ~ 2450469 (-)
si:ch211-194b1.1 wiz,LOC107731472 coding downstream 304715 2355442 ~ 2433220 (-)
LOC120573916 LOC103358683,LOC104942087,LOC104930238,LOC103393647 coding downstream 512967 2214594 ~ 2224968 (-)
ilf3b ilf3,LOC102795819 coding downstream 528678 2164720 ~ 2209257 (-)
LOC120574768 LOC103358687,LOC104930242 coding downstream 679296 2004876 ~ 2058639 (-)
si:ch211-106h11.3 LOC103375031 coding upstream 51129 2801382 ~ 2820321 (-)
LOC120574018 NA coding upstream 90180 2840433 ~ 2842813 (-)
trir csgr03h19orf43,clg4h19orf43,LOC103154935,LOC107087651,LOC103376077,LOC102224489 coding upstream 249397 2999650 ~ 3003392 (-)
hook2 LOC103364969 coding upstream 257836 3008089 ~ 3035012 (-)
rtbdn rtbdn,LOC103364965 coding upstream 370432 3120685 ~ 3141710 (-)
G151203 NA non-coding downstream 21715 2715669 ~ 2716220 (-)
G151200 NA non-coding downstream 60866 2676597 ~ 2677069 (-)
G151170 NA non-coding downstream 156441 2483290 ~ 2581494 (-)
G151181 NA non-coding downstream 169776 2567787 ~ 2568159 (-)
G151179 NA non-coding downstream 170332 2547715 ~ 2567603 (-)
G151195 NA non-coding upstream 192028 2942281 ~ 2944617 (-)
G151261 NA non-coding upstream 198832 2949085 ~ 2949619 (-)
G151275 NA non-coding upstream 219701 2969954 ~ 2970309 (-)
G151282 NA non-coding upstream 235840 2986093 ~ 2986852 (-)
G151286 NA non-coding upstream 289726 3039979 ~ 3040406 (-)
farsa farsa other downstream 576211 2132732 ~ 2161724 (-)
LOC120573864 NA other downstream 865843 1845740 ~ 1872092 (-)
LOC120573867 LOC108236047,LOC107376309,LOC101475947,LOC100695382,LOC106520692,LOC105918010 other downstream 915807 1816065 ~ 1822128 (-)
G150856 NA other downstream 998454 1724122 ~ 1739481 (-)
LOC120574287 col1,LOC108233705,LOC103393603,LOC106536191 other downstream 1117464 1606215 ~ 1620471 (-)
G151216 LOC106957010,LOC107376217,LOC103393680 other upstream 123665 2873918 ~ 2896343 (-)
G151227 LOC103393680 other upstream 161073 2911326 ~ 2915367 (-)
G151344 smarca4 other upstream 561474 3311727 ~ 3316915 (-)
LOC120575464 NA other upstream 1611595 4361848 ~ 4367343 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other upstream 1665924 4416177 ~ 4464991 (-)

Expression


Co-expression Network