XLOC_004859 (sfxn2)


Basic Information

Item Value
gene id XLOC_004859
gene name sfxn2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 33975065 ~ 33988885 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009592
TGTGTCCGACTTCCTATCATCGCAAGGGGAGGGAGACTCTTTTCTTCTGTGATTGGCGGATCTGATGCCACGTGCTCCTCCACTGCTGCAAGCCCACATCATCACGGTGTTTAACTCACTTCATTGGTTTTTACTACGACTGGAGCGCCACGAGACATAAACAACAGTGTCGAGTCGCTTTATAAAGAGAGAGAACCATGGAGGCTGTGAAGGGCTTTGATATCGATGCTCCACGCTGGGATCAGTCCACGTTTATGGGTCGCCTCAAACACTTCTTCAATATCACCGACTGCCGCACCGCTCTTCTGCCCGACTCCAGACTGGATGAAGCCAAAGTGTTGGTGGAGAGCTGCAGAGCAGGCTCTGTTCCTCCAGGCACGACAGAGGAGCAGCTACACTACGCCAAGAAACTGTATGATTCTGCTTTTCACCCCGACACGGGGGACAGGATGAATCTGATAGGGAGAATGTCGTTTCAGGTGCCCGGAGGTATGGCCATCACGGGGTTTATGCTTCAGTTTTACAGGACAGTTCCCGCTGTGGTGTTCTGGCAGTGGGTTAACCAGTCTTTCAATGCTCTGGTTAACTACACCAACCGTAACGCTGCGTCTCCAATTACACCAAAGCAGATTGGAGTTGCTTATGTGACAGCAACAAGCACAGCGTTGGCCACTGCAGTTGGCCTTAACCTCTACACTAAGAAAGCTCCTCCACTGGTGGCTCGCTGGGTGCCATTCGCTGCTGTCGCTGCTGCAAACTGTGTGAACATCCCAATGATGAGACAGCAGGAGATTTTGCATGGCATTGCTGTGACAGATGAAGATGGAAATAAACTGGGCCACTCAAGGAAAGCAGCTGTGAAGGGCATCACACAGGTGGTGATCTCTCGCGTTACCATGGCAGCGCCGGGCATGATCATTCTCCCCATTATTATGCAGAGGCTGGAGAAACACAGATTCATGCAGAAAATCACATTTCTTCATGGGCCGCTGCAAGTCATGATGGTCGGTGTGTTTTTGATCTTCATGGTTCCTGCGGCGTGTTCACTGTTTCCTCAGAGATGtTCGATGGCTGTGTCAAAACTGGAGCCGGAGCTTAGAGAATCCATCATCTCTCAGTACGGGGAGCAAATCAGTCACGTTTACTTCAACAAGGGCCTGTGAgcgctggacacacacacacacacacacatttttgttgaTAAGGTTGTTAAAAAGAAGCGTTTTGGTTTGACATTTTGCTTTACGACCCAGAGAGATTTGCTGCAGTAAAGCCTAATATATGAAGAGTTGTTTTACAATTGGCCCTAAATGCTGCCGAGAATCAGTTTGATTTGATAGATAAGTTTTACAGAAAATTTCTGGAGATTGCTTGAACCTGATTTAGTCCTCCTGTCATGTATGATTTACCCTGAATAATTGCAAGCAGATTGTGAAGTTTGAAAGATATTTCCCTCTGATGCCAAACTCCATCTTCATTACCACATACATCTCTCAGAAAGCTGTCATTTTTAAGGTCTGATGCTTTAATGCCTTCTAAAGCCATCGGTTTTAACATGTTCTTAAACTGACAGAAACTTGTCGTGAAATATATATCATGTTTATGTTTGAAATACCAGTTACAAGCATAAAATTGTGAGTCTTTAAAGGGACACatcatccaaaaatgtaaattctgtcatcatcccTTCAATTgttatagatatttttttatagatatacaggatatttcaaagaatgttggaaactggtaggtGTTGACTTCCTTATTTttttactggtttccaacattcttcaaagtatcttcttttgtgttcaacacagaAGTTTGTAACCACTTGAAGGTGTGAATGGTGAGGAAACCTTCACTTTTGGATGAATGCTCCATTTAAGGTTCAGGTTTAAAGAGTGTTTTGTGGATGTTGTGTGCcttgcatttacatttaaaaaaaggaaagcaaAGATTGATGCGCTCGTAGTCTGACCTCACTGTGAACTATCTGAGTTCTGTACTTGTTTTCATCATTATGAGATGATGAAATGAACAGACAGCTGTCGAAATAAACCCCTGAACTCGTGAGAGTTCAACCAAA
>TCONS_00009593
CTCCACTGCTGCAAGCCCACATCATCACGGTGTTTAACTCACTTCATTGGTTTTTACTACGACTGGAGCGCCACGAGACATAAACAACAGTGTCGAGTCGCTTTATAAAGAGAGAGAACCATGGAGGCTGTGAAGGGCTTTGATATCGATGCTCCACGCTGGGATCAGTCCACGTTTATGGGTCGCCTCAAACACTTCTTCAATATCACCGACTGCCGCACCGCTCTTCTGCCCGACTCCAGACTGGATGAAGCCAAAGTGTTGGTGGAGAGCTGCAGGCTCTGTTCCTCCAGGCACGACAGAGGAGCAGCTACACTACGCCAAGAAACTGTATGATTCTGCTTTTCACCCCGACACGGGGGACAGGATGAATCTGATAGGGAGAATGTCGTTTCAGGTGCCCGGAGGTATGGCCATCACGGGGTTTATGCTTCAGTTTTACAGGACAGTTCCCGCTGTGGTGTTCTGGCAGTGGGTTAACCAGTCTTTCAATGCTCTGGTTAACTACACCAACCGTAACGCTGCGTCT

Function

symbol description
sfxn2 Predicted to enable serine transmembrane transporter activity. Predicted to be involved in serine import into mitochondrion. Predicted to act upstream of or within amino acid transport; ion transport; and transmembrane transport. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Orthologous to human SFXN2 (sideroflexin 2).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0022889 serine transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040426-2831 Predicted to enable serine transmembrane transporter activity. Predicted to be involved in serine import into mitochondrion. Predicted to act upstream of or within amino acid transport; ion transport; and transmembrane transport. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Orthologous to human SFXN2 (sideroflexin 2).

Ensembl:

ensembl_id ENSDARG00000017960

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009592 False 2092 mRNA 0.44 12 33975065 33988885
TCONS_00009593 True 529 nonsense_mediated_decay 0.52 4 33975142 33980080

Neighbor

gene id symbol gene type direction distance location
XLOC_004858 trim8b coding upstream 39543 33916939 ~ 33935522 (+)
XLOC_004857 mfsd13a coding upstream 59942 33894396 ~ 33915123 (+)
XLOC_004856 mrpl43 coding upstream 155969 33817327 ~ 33819096 (+)
XLOC_004854 NA coding upstream 368477 33595902 ~ 33606588 (+)
XLOC_004855 NA coding upstream 369627 33602524 ~ 33605438 (+)
XLOC_004860 cyth1b coding downstream 62549 34051434 ~ 34192955 (+)
XLOC_004861 socs3b coding downstream 269254 34258139 ~ 34277465 (+)
XLOC_004862 tha1 coding downstream 389848 34378733 ~ 34397139 (+)
XLOC_004863 NA coding downstream 470784 34459669 ~ 34470463 (+)
XLOC_004864 si:dkey-21c1.8 coding downstream 743377 34732262 ~ 34746331 (+)
XLOC_004850 NA non-coding upstream 631780 33340215 ~ 33343285 (+)
XLOC_004848 BX936416.1 non-coding upstream 1023169 32951782 ~ 32951896 (+)
XLOC_004846 NA non-coding upstream 1448719 32431614 ~ 32526346 (+)
XLOC_004867 NA non-coding downstream 855557 34844442 ~ 34846842 (+)
XLOC_004869 CR854979.1 non-coding downstream 892892 34881777 ~ 34881895 (+)
XLOC_004874 NA non-coding downstream 1069262 35058147 ~ 35059608 (+)
XLOC_004876 CU459210.1 non-coding downstream 1117690 35106575 ~ 35107998 (+)

Expression


Co-expression Network