mcm5 (mcm5,LOC102783740,LOC106927661)


Basic Information

Item Value
gene id mcm5
gene name mcm5,LOC102783740,LOC106927661
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 3575537 ~ 3594256 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824416.1
TCGACCAACAGCAACAGGCGGTGCCGGcttccagccaatcagagcacagAAGAGGGGCGTTGCCAGACGCGAGTCGCGGGAAACAGACAGGAAGCGGTTCAGTTTTTGCCGCGGAACGGACTCTCCGAGCAGCTTTGTCTCTGCCACTTTACAGCCAGCgtgtttctcttttaaaatTAAGAAAGAACTAGTCCACGGTTTCTGCTTTTCTTCGCGCCTTGTTGTTCAGCGACCTGTTTGATTCAGCATGTCTGGCTTCGACGACCCCGGAGTGTATTACAGCGACAGCTTCGGAGGCGGAGAGGGACACGGCGTGGACGAAGGCGGACATAAGAGGATCCAGATCAAGAAACGGTTCCGCGAGTTCCTCCGGCAGTTCCGAGTGGGGACCGACCGCACCGGCTTCACCTATAAATACAGGGATGATCTGAAGAGACACTACACCCTGGGGGAGTActgggtggaggtggagatggaggaCCTGGCCAGCTTTGACGAGGATCTGTCCGACTGTCTCTACAAGGGGCCGTCTGACAACCTGCCGCTGCTGGAGGAAGCGGCCAAGGAGGTCGCCGACGAGGTGACCCGGCCCCGGCCTGCAGGGGAGGAGACGGTCCAGGACATCCAGGTCATGCTGAAGAGCGACGCGCATCACGCTTCCATCCGTGGCCTCAAGTCGGAGCAGGTGTCTCGTATGGTGAAGGTGAACGGCATCATCATCTCGGCCACGGCGGTGAGGGCCAAGGCCACCAAGGTGTGTCTGCAGTGTCGCGGCTGTCGCGGGGTCATCAACAACATCCCTCTGCCCCCGGGCCTGCAGGGCTACGCTCTGCCGCGCAAGTGCAACTCTGAGAACGCCGGCGCGAAGTGTCCTGTGGACCCCTACTTCATCATCCCAGACCGCTGCGTTTGCGTCGACTTCCAGACCCTCCGCCTGCAGGAATCCCCCGACGCCGTTCCCCACGGAGAGATGCCCCGCCACCTGCAGCTCTACTGCGATCGgTATCTGTGTGACCGTGTTGTCCCGGGCAACAGAGTGACCATCATGGGCATCTACTCCATCAAAAAGATGGCGGCCCTGAAGGCCAAAGGCAATGAGAAAAGTGCCGGCGTGGGCATTCGTGCGTCCTACCTGCGAGTGGTTGGCATCCAGCTGGACACCGAAGGGGCAGGTCGCGGGGCCACTGGATCGGTCTCTCCGCTGGAAGAGGAGGAACTGCGAGCGCTGGCTGCTTCTCCGAACGTCTACGCCTCTCTGGCCCGCTCCGTCGCTCCCTCCATCTACGGCAGCGAAGACCTGAAGAAGGCCATCACCTGTCTGCTGTTTGGGGGTTCGAGGAAGAGGCTGCCCGACGGTCTCACTCGGAGAGGCGACATCAACCTGCTGATGCTGGGAGATCCCGGCACCGCCAAGTCTCAGCTGCTCAAGTTTGTGGAGCGATGCTCGCCCATCGGGGTTTACACGTCGGGGAAAGGCAGCAGTGCGGCCGGTCTCACCGCCTCCGTGCTCAGGGACCCCAACACTCGCGGCTTCATCATGGAGGGGGGGGCCATGGTGCTGGCCGACGGCGGGGTCGTATGCATCGATGAGTTTGacaagATGAGAGAGGACGACAGAGTGGCCATTCATGAAGCCATGGAGCAGCAGACCATCTCCATCGCCAAGGCCGGCATCACCACCACCCTGAACTCTCGCTGCTCGGTGCTGGCCGCGGCCAACTCCGTGTTTGGCCGCTGGGACGACACCAAGGGGGAGGACAACATCGACTTCATGCCCACCATCTTGTCCCGTTTCGACATGATCTTCATCATCAAAGACCACCACGACCATCAGAGAGACATGACGCTGGCTCGCCACGTGATGAACGTTCACCTGAGCGCTCGGACGCAGACCGAAGGAGTCGAGGGCGATATTCCACTGGCCACCTTCAAGAAGTACATCGCCTACGCCAGAACTAAATGCGGCCCGCGGCTGTCTGCGGCGGCTGCGGAGAAGCTGAAGAACAGATACGTGGTGATGAGGAGCGGCGCAAGGGAGCACGAAAGAGAGAGCGACAAAAGGCCCTCCATCCCCATCACTGTCAGGCAGCTGGAGGCCGTCGTGCGGATCGCCGAGTCCCTCGCCAAGATGAAGCTGCAGGCCGTGGCCGGAGAGGAAGAGGTGGACGAGTCCCTCCGGCTCTTCCAGGTTTCCACGCTGGACGCGGCGCTGTCGGGCAGCCTTTCAGGAGTGGAGGGCTTCACCTCCCAGGAGGACCAGGAAATGATCTCGCGCGTTGAGAAGCAGATGAAGAGACGCTTCGCTATCGGCTCGCAGGTGTCGGAGCACAGCATCGTCCAAGACTTCACCAAACAGAAGTATCCAGAGCACGCCATCTACAAAGTCCTCCAGCTGATGTTGAGGCGCGGCGAGCTGCAGCACCGCATGCAGAGGAAAGTGCTCTACAGAGTCAAGTAGAGCAAACCGCGCTCAGAAGATGTTtgtgtcttgttgttgttgatgtaaATAGTTTTGGTCTGCCTGTccgggctttttttttttttgtccctcaGTCGTGGAAACTGCTGGGATTGactcaggctacatttacagtacacgGCTACGGTTTGGTTTATAAACTCCTATCTTTTGCCACGTTtccacctctcattccccctgctccggCGTTTCAGAGCCCTtcaactagggttgggcatcgttttggATTTGAActattctgattcttcctttagattccgattct

Function

symbol description
mcm5 Predicted to enable single-stranded DNA binding activity. Predicted to contribute to 3'-5' DNA helicase activity and single-stranded DNA helicase activity. Acts upstream of or within chordate embryonic development; mitotic cell cycle; and negative regulation of apoptotic process. Predicted to be part of MCM complex. Predicted to be active in nucleus. Is expressed in several structures, including endoderm; head; nervous system; pronephric duct; and tail bud. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 8. Orthologous to human MCM5 (minichromosome maintenance complex component 5).

NR:

description
DNA replication licensing factor mcm5-like

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0009790 embryo development biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02209 MCM5, CDC46; DNA replication licensing factor MCM5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824416.1 True 2744 mRNA 0.59 16 3575537 3594256

Neighbor

gene id symbol gene type direction distance location
foxred2 foxred2 coding downstream 13730 3549227 ~ 3561807 (-)
ankrd54 ankrd54 coding downstream 26505 3543024 ~ 3549032 (-)
hmgxb4a hmgxb4,LOC102782297 coding downstream 34365 3529466 ~ 3541172 (-)
si:dkeyp-69e1.8 NA coding downstream 48163 3517924 ~ 3527374 (-)
s1pr5a s1pr5,LOC103393734,LOC104952115 coding downstream 168295 3403000 ~ 3407242 (-)
gcat gcat coding upstream 2042 3596298 ~ 3614844 (-)
tom1 tom1 coding upstream 22753 3617009 ~ 3632601 (-)
zgc:171844 LOC103359992,LOC107094641,LOC100711370,LOC102309406,LOC102193574,LOC101465794 coding upstream 49237 3643493 ~ 3656060 (-)
mfsd6l NA coding upstream 66855 3661111 ~ 3666455 (-)
pik3r6b NA coding upstream 75563 3669819 ~ 3689399 (-)
G151515 NA non-coding downstream 52747 3522352 ~ 3522790 (-)
G151399 kri1,LOC102780649 non-coding downstream 194872 3375879 ~ 3380665 (-)
G151398 NA non-coding downstream 195999 3379186 ~ 3379538 (-)
G151376 NA non-coding downstream 248170 3327144 ~ 3327367 (-)
G151375 NA non-coding downstream 253058 3322193 ~ 3322479 (-)
G151521 NA non-coding upstream 14900 3609156 ~ 3651267 (-)
G151561 NA non-coding upstream 369792 3964048 ~ 3964411 (-)
G151615 NA non-coding upstream 460958 4055214 ~ 4112189 (-)
G151633 NA non-coding upstream 488662 4082918 ~ 4083681 (-)
G151639 LOC103360002,LOC100712452,LOC105013158,LOC102214151,LOC101470166,LOC106937022,LOC103143670 non-coding upstream 536548 4130804 ~ 4165498 (-)
G151344 smarca4 other downstream 258622 3311727 ~ 3316915 (-)
G151227 LOC103393680 other downstream 660170 2911326 ~ 2915367 (-)
G151216 LOC106957010,LOC107376217,LOC103393680 other downstream 679194 2873918 ~ 2896343 (-)
G151146 NA other downstream 770126 2399809 ~ 2805411 (-)
farsa farsa other downstream 1413813 2132732 ~ 2161724 (-)
LOC120575464 NA other upstream 767592 4361848 ~ 4367343 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other upstream 821921 4416177 ~ 4464991 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other upstream 990917 4585173 ~ 4765493 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other upstream 1584060 5178316 ~ 5227241 (-)
G152114 rbx1 other upstream 1867590 5461846 ~ 5464418 (-)

Expression


Co-expression Network