brd4 (LOC104952514,LOC103370560)


Basic Information

Item Value
gene id brd4
gene name LOC104952514,LOC103370560
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16221359 ~ 16229857 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824690.1
TTGTATGCAACCTTTTCAGGACTACTACACAATAATCAAAACTCCTATGGACATGGGAACAATCAAGAAAAGGCTTGAGAACAGTTACTACTGGAATGCCCAAGAATGTATCCAAGACTTCAACACAATGTTCACCAACTGCTACATATACAACAAGCCTGGAGATGACATAGTCTTAATGGCTGAGGCTCTAGAGAAGGTTTTCCTCCAAAGGGTCACAGAAATGCCTCAGGAAGAAACTGAGATTGTTGTTATGACGGGGAAAGGACGTGGCCGGGGCCGAAGAGACGGAGGTCTGAACTTGAAACCAGGGCCCATCATTGATTCTTCGTCCTTGACTCCTCAAACACGTGGTCTGTCAAACCTCTCAGCAGCACCGCAGACCAGAGGACCAGTGCAGGGCCCGCCTTCACTACCTCCCCAGCCTTTGATGCAGGCCCTGCCGTCCCACGTGGCCCCAACATTACCCAGCCATGCACCACAGCTCGGAGGTCCCTACTCCCTGGGCCAATCAGACTGTGCTCCTCAAGTTCCCATCATGACTTCTGTGCCTCCCCCTGCTCAGACCTCCCTTCCCCCAGCATCCATCCAGAGCACTGCCCCCATGCTGCAGAGTCCTATAACCATGACCAAACAAAGAAAGAGCCAGAAAAGGAAAGCTGACACTACAACGCCCACAGCAAATGACCAACTGAGTGAGTCTTCACCAGCAGAGTCCAAATCTGGGAAGACACTACCCAAGCGAGAGAGTACTCGGCCTACAAAACTGATAAAGAAGGATGCTCCCGACTCCCAGCATCACATAGGCATGGGGATGGGACTGAGTGGACCAAGTGGAGGTCATAGCCCCAAACCACAGGATCAGCTGGGATACTGCGCTAGTCTGGTTAGGGATATGCTGTCCAAGAAGCATGCTGCTTACGCCTGGCCATTCTACAAACCTGTTGATGTGGCTGCACTGGGACTACACGATTATCACGATATCATCAAATATCCAATGGACCTCAGCTCCATCAAGGCCAAGCTGGAGAATAGGCAATACCGAGAACCCCAGGAGTTTGCTGCTGACGTACGATTAATGTTTTCCAACTGCTACAAATATAATCCACCAGACCACGAGGTGGTAGCTATGGCACGCAAGCTACAGgATGTCTTTGAGATGCGCTTTGCCAAGATGCCAGATGAACCTGAGAGCAAGCCACTGATTCCTGCCCCAGCTCCAACACTTCACCATCCTGCCCCTGTTAAGCCCCAGCCTCCTTTGGCCCATGTCGCCTCGTCTTCAGACAGCTCCAGTGACTCATCCTCTGAGTCTGAGTCATCCACAGATGACTCGGAAGAGGAGAGAGCCCAGAGGTTGGCAGAGCTCCAGGAACAGTTGAAGGCTGTCCACGAGCAGCTGGCTGCCTTGTCCCAACCACAAGCCAGCAAaccaaagagaaaagagaaggaaaagaaggagaagaaaaaagaaaagcataagAAGAAAGGAGGCATGTTGGGCCTTGTAGATGAGATCCAGGATGCTACACCTGTTCCGCAGCTCTCTAAGAAGACCAAGACcagcaacaataacaacaaagaGGTCGTACCCAAGAAAAAACCCAGTAAAAAGGAAGGGATGAAAAGCAATCACCCCTTCAACCTGCTCCCGGTTTCTAGCCTGGAAGAAGATTTGGGGACCGCTGGGTCATCAGCTACAGGGGAAAAGTGCAAGCCTATGACGTACGAGGAGAAGAGGCAGCTAAGCCTGGACATCAACAAGCTTCCTGGTGACAAGCTCGGCCGTGTAGTGCACATCATCCAGTCCAGAGAGCCCTCACTCAAAAACTCAAACCCTGATGAGATCGAGATTGACTTTGAGACGCTAAAGCCTTCCACTCTGCGCGAGCTGGAGAGATATGTGTCTTCCTGCCTCCGCAAGAAGAAAAAGGTTCCAGTTGAGAAGCCTGTGGAGTCAATGGCTACCTCCAAAAAGACTGGATCCTCTTCAGAGAGCAGCGGCTCCAGCACAGACAGCGAGGCTGAGGGGACAGGAATAATAAAGCATCAGAATCACAAGAAGAAGGGCCAGTCTGTGAAGGAGGGGAAGAAGACCCATCCGCATGTACACATTCAGAGTGGCCCTGCTCAGACTGGGCTTCATTCCCAAATTGCAGGCCTTCAGTCCAGCAGTCAGATgaagcagcagcatcagccatCTCCTGCAGGCTTCATTGCTCCCCCTGTAGCTGCTCTGGAGTCTTCCCAGTTACTGGAGACTAGCTTTGAGTCCCTGCCACCTTTTGGCCAGCCCCTTATGCATCTGTCCCACCACACAGGCAACTCCTCCTCACCCGCACCTCCACACCTCAACGCTCATTCTGCGGGGCAAGTGTCCCCTGAGACGCACCCCTTCCTCAACCAGCATCCCGTCCTCACATCCCCAGCCTTGCACATTTCCATGCCTCAGCAGCCTTCTCGACCCAGTCACAAGGCAGCGCCTCTTCATCCCAAACCCCCCCAGCAGCAAACAGCCCCTCCTCAGCAGCAGCCAAccctgcagcagcaacaactgCCTCAGCAGCAACTCCAGCCCCAGtcagcaccaccaccaccaccaccaccacaacacCAGCTTTCCTCCCAGATCCTCCACCCTCCTCAGCCCCTGCACCAGCGGCCCATGTCCCCTCCAACACTCACACCCCAGGGCTTGCTGTCTTCCCAGCCTCCCCAGATGCTGCTGGAGGATGATGAAGAGCCAGGGTCTACAACGCCTATGAACCAAGTACAATTATACCTGCAGCAGTTCCAGCAAGCCCGTCAGCCCCAGCAGTCCATGCAGTTGCTCCAGGCCCAGGCtcgtcagcagcaacaacaacaacaacaacagcagcagcagcagcagcagcagcatcaacaacaacaacaacaaccaggaCAGATCTCTCTTCTGCAGTCTGTCCAGGGACAATCTCAACTCTCCTCTCAGACCACGCTGCCTCCTCCCCGGCTCCCTATTCAGTCCCAGGCTCAGCCAGCCCCTTCACATCAGGCCCCGCCCCAACAGATTCCTCTACACCAGGCCCACCACATGCAGCACACTCTGCCGCAGCAACAGCAGCCACAACAGCAACAACTGAACTACCAGCAGGGTCCTGGACTAGCTGGTCAGTCCCAGGGATCACAACACAAGGTATCCATGCCCACCAACAAAGCACAGCAGATCATCCAGCAACAGCAAGAGCAGCCCTCCCCTCGCCCAACCAAGGCTGACCCTTACAACGCAGGTCACATGAGGGACAACCCATCCCCTCTCATGATGCATTCCCCACAACTTCCCCAGTATCCACCCGTGTCTCACCAGTCCCCACCTCACAACATGCAGCCCAAAAAGCAGAGGGCCCCTGTGAGCCATGGTGGGGTAAAGGAGGAGAAACTTCCTCCATCACCAGTGATACGAGGAGAGCCATTTAACCCTGCAATGAGACCAGACCATCACAAACATCCTGATAACAAGCCTTCTCAACCAGGCCACGGCCAACAGAATGTAAAGTCCATGGACAGCTTGCGACCTGTCATCCGCTCCTCCCAGTCCAGTGGCCCGCCCTCCTCTCTGCAAGACAAGGATAAGTTCAAGCAGGAGTCATGA

Function

NR:

description
bromodomain-containing protein 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824690.1 True 3634 mRNA 0.54 14 16221359 16229857

Neighbor

gene id symbol gene type direction distance location
lpar2a lpar2,LOC104918571,LOC103392869 coding downstream 5966 16208250 ~ 16215393 (-)
LOC120574526 LOC103364137,LOC104952516,LOC108256828 coding downstream 113463 16106007 ~ 16107896 (-)
LOC120574529 NA coding downstream 116751 16101744 ~ 16104608 (-)
vac14 vac14 coding downstream 122370 16095711 ~ 16098989 (-)
trim35-13 LOC103364132,LOC102792268,LOC102305948,LOC101478242 coding downstream 128634 16089414 ~ 16092725 (-)
LOC120574499 LOC101164155,LOC101071797 coding upstream 53023 16282880 ~ 16296424 (-)
nr5a5 LOC104952484,LOC103370553 coding upstream 111237 16341094 ~ 16344963 (-)
soul5 NA coding upstream 116521 16346378 ~ 16348909 (-)
notch3 LOC103358203,LOC104952487 coding upstream 138749 16368606 ~ 16397486 (-)
rdh8a rdh8,LOC103358204,LOC102201298 coding upstream 203766 16433623 ~ 16439841 (-)
G155481 NA non-coding downstream 49054 16170923 ~ 16172305 (-)
G155462 colgalt1 non-coding downstream 102867 16117119 ~ 16118492 (-)
G155461 NA non-coding downstream 105837 16115108 ~ 16115522 (-)
G155460 NA non-coding downstream 109296 16110699 ~ 16112063 (-)
G155439 NA non-coding downstream 166603 16053990 ~ 16054756 (-)
G155500 pet100 non-coding upstream 29962 16259819 ~ 16262030 (-)
G155507 NA non-coding upstream 49634 16279491 ~ 16280224 (-)
G155508 NA non-coding upstream 50526 16280383 ~ 16281568 (-)
G155512 NA non-coding upstream 70690 16300547 ~ 16300761 (-)
G155532 LOC103358202,LOC104952486,LOC100696339 non-coding upstream 136145 16366002 ~ 16366852 (-)
LOC120574545 chchd5 other downstream 65292 16153787 ~ 16156067 (-)
G155323 LOC108415010,LOC101162128,LOC104945817 other downstream 405990 15813058 ~ 15815369 (-)
LOC120574502 LOC103367168,LOC100699371,LOC108241234,LOC101473146,LOC106529605 other downstream 432844 15746791 ~ 15788515 (-)
LOC120574537 NA other downstream 475787 15741763 ~ 15745572 (-)
tecra LOC103367165,LOC101076261,LOC106932487,LOC104960308,LOC108241336,LOC106529633,LOC103151989 other downstream 496937 15717847 ~ 15724422 (-)
LOC120574432 LOC103392867,LOC102312066,LOC104952514,LOC105932031,LOC102787456,LOC101484431,LOC102198284 other upstream 602 16230459 ~ 16259025 (-)
G155583 eif3g other upstream 339589 16569446 ~ 16642131 (-)
angptl6 angptl6 other upstream 391969 16621826 ~ 16626733 (-)
mgrn1b mgrn1 other upstream 782554 17012411 ~ 17023208 (-)
polr3k polr3k other upstream 803128 17032985 ~ 17035040 (-)

Expression


Co-expression Network