trim35-13 (LOC103364132,LOC102792268,LOC102305948,LOC101478242)


Basic Information

Item Value
gene id trim35-13
gene name LOC103364132,LOC102792268,LOC102305948,LOC101478242
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16089414 ~ 16092725 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824886.1
CTCAGCACAACAGAGCATAACACGGGATATGCCTTTGGGAGCTGAGGTATCAACACTTATTTCTGAGGTCAAGATGAGGTAGCCTTCCAGAGAAATGGGAGGGGCCTCGAATCCTGCCTTCTCATCAAAGCCCTGTGACGAAGAATGGCCACCAGACGTGCTCATCTAGAGGATGACCTTTCCTGTCCAATTTGTGGACATATTCTCAGTCAGCCAGTGGTGCTCAATTGCAGACACAGATTCTGTAAAGCCTGTCTAAAAGACAGCTGGGAGACACAAGGCAGCGAGGATTCACACTACTGTCCTCTGTGCTGGCGCTGTGCCTCCATGGATCAAATCGTGGTGAGCTCTGTGCTGGAGAAGTCCTGTGAATCCTTCAAGCAGGACAGAAGCAAGAATGACCCAGAGGCTTGTAAGGAGCATGGAGAAAAGCTCACATTGTTCTGTTTGGAGGACTTGGAGCCAATCTGTGGTATATGTGGGAAAGCAGCTGCACACACTGGGCACAGGCTCTATCCCATTGGGGAAGGTGCTCATGACTGTAAGGAGGAACTGAAGAGTGCGCTGTTGCCTTTGAAAGAGAAGTTGCAGGTCTACAAGAAGGCAAAAATGGCCTGTGAGGAAATGGCAGAACATGTCAAGAAACAGGCTGAACATACCGAAACACAGATCAAAGAGGAATTTGAAGCCCTTCATAATTTCCTGAAGGAGCAGGAGGCTGCCAGACTTTCAGCTTTAAATGCTGAGAAGGATCAGAAGAATCTAATGGTTAACCAGAGGTTTGAGGAGATGAGCAGTGAAATTACATCTCTCTCCAACACCATCAGATTAGTGGAACAGGAGATGAAATCTCAAGATATCCCATTTCTTAAGAATTACAAGGAAACAATAAGGAGAACTTGGCAACCTTCTCTTGAACCACAAATGATTGCTGGTGCTCTGATTGATGTGGCCAAGCACTTGGGCTCTCTGAAATATAAAGTGTGGGAGAAGATGAAGAGTATAGTTAAATATAaTCCTGTGATACTGGATCCAAACACCGCAGCTAACTGCTTCATCCTCTCAGAGGATCTCACAGTTGTGCAGAACTCCACCCAGATTTTCAAGCTGCCAGACAACCCAGAACGCTTTGACATCAGCGCTGAGATGCTGGCTGCTGAGAGCTATACCTCTGGACGCCACAGCTGGGATGTGGAGGTAAAGGACAACACCTACTGGGTGGTGGGAGTAGCCAGCGAGTCCATCAACAGGAAGGGTAAACATGTGCTGACACCAGCAGAGGGATTCTGGACTATAAGGTTTCGCAACGGAGAGCACAAGGCCTGCACTGCACCATGGGAGCCGCTGAACATGACTAAGAAGCCAGAAGTGATAAGAATAGTTTTAGACATGGACAGATGCAAGGTGACATTTTATAACCCTGGAGAGAGAACACCTCTCTACACCTTCAAAGATATAATCACACCCAGAGCCTTTCCCTACTTTTGCTCTGCCTGCAAAGAGCATCCACTGAAAATCCTACCCACAAGGATACTCTTGTCAACAGACAACTAATTCACATTGGAGTGAGACATATTGCCAACCATTGTTTGTATAAAAATCATCCTATGATGCTTGTGAAGGTTATTTTCTTAATGAATGACATGAAACAAACAGATagcttttaaaatatttaatttgagTTACAACAGAAACTGTACTCTGGAAGATTGGAAATTGTAAATAGCCTTAATACCCATATATTACACTGATAAGATGTGTTACATAAAATGAGTCACCTGTGTGACTCAGCTTTGCATGACACAAAATCACTACTGTGATATTCACAATATTTTGAGCTCCTTTCCAAGAAAAGCACTACAAATTGAAACACTATCTGATGTTTCATATAAGGCACATACAGTTACCAACTTTTTGTGTAATTGCAAACCTGTGCAAGTGTTGTTCAGAGGCTCAAATATGACAAGTGAGATTAGTTTTccattgcattaaaaaaaa

Function

NR:

description
PREDICTED: zinc-binding protein A33-like isoform X1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824886.1 True 1998 mRNA 0.44 7 16089414 16092725

Neighbor

gene id symbol gene type direction distance location
adgrl1a adgrl1,LOC103392844 coding downstream 99229 15894009 ~ 15990185 (-)
tmed1a tmed1 coding downstream 252346 15833500 ~ 15837068 (-)
qtrt1 qtrt1 coding downstream 292965 15790051 ~ 15796449 (-)
crb3a crb3 coding downstream 415959 15670165 ~ 15673455 (-)
LOC120574497 LOC104960315,LOC103367159 coding downstream 424817 15662274 ~ 15664597 (-)
vac14 vac14 coding upstream 2986 16095711 ~ 16098989 (-)
LOC120574529 NA coding upstream 9019 16101744 ~ 16104608 (-)
LOC120574526 LOC103364137,LOC104952516,LOC108256828 coding upstream 13282 16106007 ~ 16107896 (-)
lpar2a lpar2,LOC104918571,LOC103392869 coding upstream 115525 16208250 ~ 16215393 (-)
brd4 LOC104952514,LOC103370560 coding upstream 128634 16221359 ~ 16229857 (-)
G155439 NA non-coding downstream 34658 16053990 ~ 16054756 (-)
G155359 NA non-coding downstream 197483 15891021 ~ 15891931 (-)
LOC120574547 NA non-coding downstream 263760 15822991 ~ 15825654 (-)
G155307 LOC104918593,LOC104960307,LOC103367166 non-coding downstream 315106 15728933 ~ 15774308 (-)
G155298 LOC108429687,LOC105910964,LOC100700452,LOC104918597,LOC103367163,LOC101470440 non-coding downstream 393856 15694773 ~ 15695558 (-)
G155460 NA non-coding upstream 17974 16110699 ~ 16112063 (-)
G155461 NA non-coding upstream 22383 16115108 ~ 16115522 (-)
G155462 colgalt1 non-coding upstream 24394 16117119 ~ 16118492 (-)
G155481 NA non-coding upstream 78198 16170923 ~ 16172305 (-)
G155493 NA non-coding upstream 111803 16204528 ~ 16223250 (-)
G155323 LOC108415010,LOC101162128,LOC104945817 other downstream 274045 15813058 ~ 15815369 (-)
LOC120574502 LOC103367168,LOC100699371,LOC108241234,LOC101473146,LOC106529605 other downstream 300899 15746791 ~ 15788515 (-)
LOC120574537 NA other downstream 343842 15741763 ~ 15745572 (-)
tecra LOC103367165,LOC101076261,LOC106932487,LOC104960308,LOC108241336,LOC106529633,LOC103151989 other downstream 364992 15717847 ~ 15724422 (-)
metrnla metrnl,LOC102778978 other downstream 639897 15443124 ~ 15449517 (-)
LOC120574545 chchd5 other upstream 61062 16153787 ~ 16156067 (-)
LOC120574432 LOC103392867,LOC102312066,LOC104952514,LOC105932031,LOC102787456,LOC101484431,LOC102198284 other upstream 137734 16230459 ~ 16259025 (-)
G155583 eif3g other upstream 476721 16569446 ~ 16642131 (-)
angptl6 angptl6 other upstream 529101 16621826 ~ 16626733 (-)
mgrn1b mgrn1 other upstream 919686 17012411 ~ 17023208 (-)

Expression


Co-expression Network