cabp5b (LOC104945275,LOC103374841,LOC100700336,LOC104930357)



Basic Information


Item Value
gene id cabp5b
gene name LOC104945275,LOC103374841,LOC100700336,LOC104930357
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9043413 ~ 9048123 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039825003.1
AGAGATAATCCATATGAGACATCATCCCTCCTCTCTGGCATACGCAGATCACTGCTGATCAGggtttacacacagacacatgctagcacaaaaaaaaaaaataactgaatgATATAGCAgcaaattattatttaacaaaGAAATTCATAAATACAAGTAGCTCAGGATCTCGACTAAGGCTGTCATCATGACTACTAAACAAGCCTGCATCTTTCTCAGAGGAGGAACAAGGAGACAAACAAGATCTCTTACACACGATGAGATTGAAGAGTTACGTCAAGCTTTTGTTGAGTTTGATAAAGACAAGGACGGTTTCATAAGCTGTAAGGACTTGGGGAACCTGATGAGGACCATGGGTTACATGCCGACTGAAATGGAGCTTATAGAACTGAGTCAGAACATTAACATGAATCTGGGCGGACGGGTGGACTTTGAGGATTTCGTGGAACTAATGACCCCAAAGCTCCTGGCTGAAACAGCAGGGATGATTGGGTTAAAGGAGCTAAAAGACGCATTTCGAGAGTTTGATTTGGATGGTGATGGTTCTATCACATCTGAGGAGCTCAGACATGCCATGAAAAAGTTACTGGGAGAACATACCTGCAAAAAGGAAATTGATGCAGTGGTCAAAGAGGCTGACAACAACGGAGATGGAACAGTTGACTTTGAGGAGTTCGTGAAAATGATGTCAAAGAAATGAGAACAACAGAATGAATGGATGACTGTGAATGGATGGGATTCTGTTTGATTCTATGATGATCATACGCTACTTCTGATGAATTTTATTATCCTGTTATTTAAGTGGCATCtgtctcacacatgcacacatggagCTCATTAATTTCAAGTgagcaaataattttttttctttttgttaaaattgatGGATATAAAATTGTTCAAATGTGATGGTGTCACAAGTAAAATTAGTTGACATGTTAATGTCTCAGTTATAATTATAAGCGGCTGTTGAGATGAACACTATTTACAAGTATACAATAACTCCAATGTTACATGAACACGGCATAAGCCAACAAAAGCCAGTAATACTGCAGGTACCAGGACTCTGCAAAAACACAGTTGGGGGCTGAGGCCCAACCTCTTATGAACAGCCTGCTTCTGTCAACCTCAGCTTTTCTTTATAAGTTACATTTCACTCACCTATTTTAATTCACTTTAGGGCAAAGAATAGAGCCAATAGCATTTTATGATACCTTGCACTAGATAACGATGTGTGAACAGCATGGGAGGGAATTAACTATGTGCATGCTTCTTCCAAAGGATGATCAGTTGATATGTTTCTAAGGCTTTACTGGTTGTGGACAATGCCAACAGCTCTTCCAAAATGTAGTTCCTCATCTGCTGTAGGGATTGTCTGTAGCTAGTTGAATCTGATCCAGAGGACATTATTTATCAGTTGACAATGTTCAGCACTGACCTCCCAAAAGTAATGTTTGACTCTGCCTTTAATGTACCTGGAGAACATGATCTCAGGAGGGACGACTGTCCTCTACTGCCACTTTTTCACCTCCCATGCTTCTGGCTCAATAGGGTGTAAAGGCAACCCACCATCTGTTTGAAGATTCTGTAGTTGAATATAAATAGTACAAGTACATTTCAAGTTCTGTCAATTTTAAGTTCTTTACTAtttgtatttccattttatgctactttatacttttactccattacattttgaaagCCAATAATACTTTTGATTACACTACATCTATTTGACAACTTTAGTTATTTGTTACTTggcagattcagattattaatacaaaatatcaaTCTACAAATAAATGTTGTTAATGTAAATCAGCCCCAGCTTtaccagcagcagcattagTTAGGCtttcacattaatgcatcattaATTATAATTCAGTCatcttatatatattattctcaAATGGGCAATTCTGCATAATGATTACTTTTTCTTTGGGTATGAGtcagtatattttgatgccaaTACTGAaactacttttacttgtaacagagtgttTTACACTGTGATAATTCTactttatttaagtaaaggttatgagtacttcttccactaaCTGGTATTAACAACTGTGTTTTCTGAAAGTTTACCTCAGTGTTTGCATATGAGCCTACTTACATCTCAAGACAAATTGCAGTTttcagaaaaatacaaattttgAGAAACTGTGTGatgtgtgctttttttctttgcatatACTAATATCTGATCCTGATCACCTCCACTTGTTGCAGCAGGGCTAACACACTGGTCTGACAAGAAATGGTTCCATTGTGATTAAGTAGCTATCTTGCAGTGCGATATAATGATCAGAGGTTGTAAAGTGTAATAATGGCTTTCAGttataaacattttcaaaattattgaACTAGTGCTGATGCAGTGATATGATGAAATTTGATCGGTTTGGTCAAGTCTGCCACATGGGCTACAATGGCGCAAACATACTAATtaagtgcatgtgtgtatttgcatttttattttttgtgtggcatgtgtgtctgtaaagaATATTCCAAAATAAAACGTCATAATGCGAATTTTGAATCAAA

Function


NR:

description
PREDICTED: calcium-binding protein 5-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23531 CABP1_2_4_5; calcium-binding protein 1/2/4/5

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039825003.1 True 2562 mRNA 0.37 6 9043413 9048123

Neighbor


gene id symbol gene type direction distance location
sez6l2 sez6l2 coding downstream 6585 9020086 ~ 9036828 (-)
kctd13 kctd13,LOC104945278 coding downstream 24673 9011223 ~ 9018740 (-)
hirip3 NA coding downstream 32482 9003265 ~ 9010931 (-)
antkmt LOC103374876 coding downstream 40262 8998880 ~ 9003151 (-)
xpo6 xpo6,LOC102794690 coding downstream 45043 8973823 ~ 8998370 (-)
LOC120574368 NA coding upstream 343442 9391565 ~ 9406804 (-)
LOC120574369 NA coding upstream 359731 9407854 ~ 9408482 (-)
LOC120574660 NA coding upstream 372029 9420152 ~ 9420698 (-)
LOC120574659 NA coding upstream 376386 9424509 ~ 9425046 (-)
LOC120574373 NA coding upstream 387169 9435292 ~ 9436866 (-)
G153137 NA non-coding downstream 267147 8700109 ~ 8776266 (-)
G153139 NA non-coding downstream 358660 8659611 ~ 8684753 (-)
G153143 NA non-coding downstream 396122 8647083 ~ 8647291 (-)
G153142 NA non-coding downstream 398388 8644784 ~ 8645025 (-)
G153130 atp2a1 non-coding downstream 427301 8612277 ~ 8616112 (-)
G153274 NA non-coding upstream 13173 9061296 ~ 9111224 (-)
G153275 NA non-coding upstream 16873 9064996 ~ 9085687 (-)
G153455 NA non-coding upstream 148635 9196758 ~ 9203859 (-)
G153456 NA non-coding upstream 151535 9199658 ~ 9501467 (-)
G153462 NA non-coding upstream 171476 9219599 ~ 9219903 (-)
zgc:55558 p-ras,LOC105029053,LOC104950842,LOC104930345,LOC103392975,LOC101069736,LOC106606379,LOC103023536,LOC108413997 other downstream 135751 8895782 ~ 8907662 (-)
tufm tufm,LOC106606342,LOC101070424,LOC106606341,LOC106931188,LOC103145412 other downstream 185842 8850443 ~ 8857571 (-)
natd1 natd1 other downstream 227108 8812330 ~ 8816305 (-)
G153172 mrps34,LOC102799846 other downstream 310394 8731397 ~ 8733019 (-)
G152952 NA other downstream 599032 8441179 ~ 8444381 (-)
LOC120574599 NA other upstream 139127 9187250 ~ 9204006 (-)
LOC120574343 NA other upstream 141261 9189384 ~ 9190066 (-)
LOC120574654 NA other upstream 143863 9191986 ~ 9192402 (-)
LOC120574662 NA other upstream 168946 9217069 ~ 9224455 (-)
LOC120574348 NA other upstream 172418 9220541 ~ 9221090 (-)

Expression



Co-expression Network