mylpfa (mylpf,LOC107378514)


Basic Information

Item Value
gene id mylpfa
gene name mylpf,LOC107378514
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 21680872 ~ 21685688 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825057.1
CCATCCAAACTTGAAGCTGTGGCTAAAGTTAGATTGGCCGGCAGAGGGGTATATAAGCCCCCGGGGATGTTGGTACAACGCGGCTTCACACTATCTTCTCCTTCTTGATCAGCCAAACCTCCACTCATACCGTCTCAAGATGGCACCAAAGAAGGCAAAGAGGagggcaggaggaggagatagcGGCTCCTCCAATGTGTTCTCCATGTTTGAGCAGAGCCAGATTCAGGAGTACAAAGAGGCTTTCACAATCATTGACCAGAACAGAGATGGTATCATCAGCAAAGATGACCTGAGGGACGTGCTGGCTTCAATGGGCCAGCTGAACGTGAAGAATGAGGAGCTGGAGGCCATGATCAAGGAGGCCAGCGGCCCCATCAACTTCACCGTCTTCCTCACCATGTTCGGAGAGAAGCTGAAGGGTGCTGACCCTGAGGACGTTATTCTTACCGCCTTCAAAGTCCTGGACCCAGAGGCTACTGGAAGCATCAAGAAGGAATTCCTTGAGGAGCTCCTGACCACTCAGTGCGACAGGTTCTCAAAGGAGGAGATTAAGAACATGTGGGCCGCCTTCCCCCCAGATGTTGCTGGCAACGTGGACTACAAGAACATCTGCTATGTCATCACACacggagaggagaaggaggagtaAAGACAAAGCTAGAAGACAAGAAAGACAGCAATCCCTTTGCAATTCTGCCTTCCCTGcccttttctttcctcctcttccttcttcgCTTAGCTCTTGTGTAAACCCATGTGCTCAGCCGTTCATATTCAAACCAAAGACTTGTCACACTGACACGAGGGGGCTGATGCACATGGGGTGTCTATGTTTGCTTATGGTGAATAGGGGtgatttttaataaaatgatcCTGTAACATTATCTCCATCAACAAACTTTTCTCAAAAACCTTCTTTCTTTGCAACCATCTTCTGTCTTCTCACCTCTATATTTCTGTCAGCTCTGTCACTTCCACCTTCGAGGTGTTTGTGTAAATGAAATGTGTCCCTCTGCTTCCCTCAGTATCTGAGCAGAAGACAGGTTTTCTATTGGAAAGGGGGGCACAGAAATATATGAGGACCTCATTCCAAATTTTGAAGATGTCCTCTTGAAAAAAGGTGAGAGGAGGGAGAGCATTTGCAGGTTAGAAAAAAATAAGTTGCCTCCTTAAGGACTTTTTCCttgaaaagtgaaagaaaaaagactGAAGGAGTGGAGAGAAAGGGCCGAAAGAAAACATTCAAGTCTTCGATTTTTTTCCCTTCGCTCCTTCCTGCAACCATTAAATCATCTTTTTTTCCCATAAGCTGAACTCTTCCTAGCCTTTCCTCTGTAATGAATAAAAGGGACAAACTGTGAATAAAACCTCTTTCCTTTTGTAAAAGAA

Function

symbol description
mylpf Predicted to be a structural constituent of muscle. Predicted to be involved in skeletal muscle tissue development. Located in lysosomal membrane. Implicated in distal arthrogryposis type 1c.

NR:

description
PREDICTED: myosin regulatory light chain 2, skeletal muscle isoform, partial

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12758 MYLPF; fast skeletal myosin light chain 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825057.1 True 1392 mRNA 0.46 7 21680872 21685688

Neighbor

gene id symbol gene type direction distance location
dcaf7 dcaf7,LOC100702343,LOC105030232,LOC105898766 coding downstream 65769 21610676 ~ 21615103 (-)
trnac-gca_31 NA coding downstream 76436 21604365 ~ 21604436 (-)
strada strada coding downstream 167471 21501199 ~ 21513401 (-)
rundc3aa LOC103357380,LOC101465462,LOC104930217,LOC100703962,LOC102776052,LOC102192765 coding downstream 182104 21482945 ~ 21498768 (-)
fam117aa fam117a,LOC102291926,LOC102800024,LOC103357381 coding downstream 199150 21473165 ~ 21481722 (-)
pheta2 LOC103367340,LOC104943744,LOC104930231,LOC103392672 coding upstream 5007 21690695 ~ 21694802 (-)
si:dkey-66i24.7 LOC102077857,LOC102782865,LOC102307613,LOC101474966,LOC103367331,LOC104934487 coding upstream 58398 21744086 ~ 21746426 (-)
LOC120575109 NA coding upstream 92959 21778647 ~ 21785262 (-)
LOC120575110 NA coding upstream 100518 21786206 ~ 21789638 (-)
cldni cldn32a,LOC103367325,LOC104930709,LOC103392689 coding upstream 130322 21816010 ~ 21819485 (-)
G157075 hsd3b7 non-coding downstream 13474 21665450 ~ 21667398 (-)
G157065 NA non-coding downstream 45279 21634789 ~ 21635593 (-)
G156989 NA non-coding downstream 185757 21467195 ~ 21495115 (-)
G156985 NA non-coding downstream 218192 21461520 ~ 21462680 (-)
G156934 NA non-coding downstream 354471 21326114 ~ 21326401 (-)
G157081 cd2bp2 non-coding upstream 9243 21694931 ~ 21698789 (-)
G157092 NA non-coding upstream 41507 21727195 ~ 21729411 (-)
G157135 NA non-coding upstream 135934 21821622 ~ 21831111 (-)
G157144 NA non-coding upstream 153902 21839590 ~ 21840057 (-)
G157145 NA non-coding upstream 156418 21842106 ~ 21842378 (-)
G157034 NA other downstream 57911 21621030 ~ 21622961 (-)
ndufa4a LOC101066870,LOC103357383,LOC101155111,LOC107378524 other downstream 215795 21463207 ~ 21465077 (-)
LOC120575154 spop,LOC102792310 other downstream 288125 21333409 ~ 21392747 (-)
selenow2a LOC102798572 other downstream 572079 21105860 ~ 21108793 (-)
atxn7l3a atxn7l3 other downstream 609365 21064760 ~ 21071507 (-)
LOC120574354 NA other upstream 29326 21715014 ~ 21718729 (-)
G157096 LOC102782282,LOC100692966,LOC103367351,LOC107084765,LOC104927186,LOC102201015 other upstream 48694 21734382 ~ 21740703 (-)
LOC120575106 LOC103367329,LOC107658449,LOC107564019,LOC107674165,LOC104934486 other upstream 69053 21754741 ~ 21756191 (-)
G157147 cdhr2 other upstream 163407 21849095 ~ 21856016 (-)
G157384 LOC102296880,LOC102202593,LOC101475579 other upstream 940098 22625786 ~ 22639389 (-)

Expression


Co-expression Network