LOC120574716 (LOC102301616,LOC103363960,LOC100701445)


Basic Information

Item Value
gene id LOC120574716
gene name LOC102301616,LOC103363960,LOC100701445
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 1500772 ~ 1509112 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825099.1
GACAACTTGTAGTAAGGTAGTTAGCCACCTAGCTACATCACAACAAACCGCAAATTCTTCATATTTTGAATACGCCATCGCTCCGGTTCCGCGTGGTGAAACTGCGGCTTCACAGTTTCTGTCCCGGTGTGCTGGATCTGAGCACCAGGATAGGGAAGCAAAGCGAAGGGGCAGCTGCCGGCGGTGCAGCGAGCCCGGTGGACAAAATGCCAGAAAGCCCGGAGAAAATCTCGTCGGTGTCGGCTCAGGAGCTGAAGGAACAGGGCAACCGTCTCTTTCTGAACCGCAAGTACCTGGAGGCTGCCGCCTGCTACAGCAAAGCCATAAGCCACAGTCCGTGTGTCCCAGCATACTACACCAACCGAGCGCTGTGCTACGTGAAGTTGCAGCAGTACGACAAAGCTCTGGCAGACTGCCGACACGCGCTGGAGCTCGACAGCCAGTCGGTCAAAGCTCACTTCTTCATGGGTCAGTGCCACCTGGAGATGGAGAGCTACGACGAAGCCATCGGCAACCTGCAGAAGGCCTATAACTTGGCGAAGGAGCAGCGTCTGAACTTTGGGGACGATATCCCCAGCGCTCTGCGGATCGCTAAGAAGCAGCGCTGGAACAacatggaggagaggaggatcAACCAGGAGAGCGAGCTGCACACCTACCTCACCAAACTCATCCTCTCGGAGAAGAAGAGAGAAGTGGAGGGCTGTAGACAGAAAGACGACGACAGCAGAATTCAAcacaatccaaacgagattcacACAAAACATGACAAGTATCTGTCAGACATGGAGGAGCTGTTCTGCCAAGTGGACGAGAAGAGGAAGAAGCGCGAGATCCCCGACTTCCTGTGTGGAAAGATCAGCTTTGAGTTGATGAGAGAGCCCTGCATCACTCCCAGCGGAGTCACCTACGACAGGAAAGACATCGAAGAGCACCTGCAGCGAGTCGGCCATTTTGACCCTGTGACGCGCTCTCCACTGACCCAAGATCAGCTCATCCCAAACCTGGCCATGAAGGAAGTCATcgatgcttttattttggagaACGGATGGGTGGAGGACTACTGACcaatgagaggagaggaagagaagtgATTTCTGACCGTGTCAGAGGGTCGTTGCTTTAATTTAAACACAAATCCCAGTTTGTTGACGTGTGTCCTGCAGAAATCATCAGAGAGCCGCCGGAGCAAACTAAACTTAAAGGAggaatatgtaatatatttactgtcttGATTCCTAAAATGACCACGATGTGTCATCATATATTAAGTGAACATACCGACAACAGTGCTagagccagtattttctccttttgaaatgtcCATATCGGTCTGTTTTTAGTTTTGGTCTGTGTGTTGCCAATTTTCACacccgggttgccagatattaaacgcaaacacacaaaaacaacatgcTGCAGCAACCAACCAACTAACCAAACAGGGTCAACAGAGAGAGATTCATTCTAACCGACCTTAAAAACAGTTGCATGACTACAGATGGGGAAATATTGGAGATAATACAAACTGAAATGAATGTAAAACCCACAAAAATCAAAGTTATGAAATCAagaaaaagccaaagaaaacaaATTCAGTTGAGAGAAGCATCACTAGAGGGCGCTGTCAGTCCTCTAGTAACACGAATGTTTCAGCAGCATTGGAACTAGTACTCAGAAGTactcaaatataaaaatatactatcacaagtaaaagtcctgctttcaaaatttgacttaaagtgctcatattatgctttttggcttcaAGTCCAACAGATTCTGTCCAAAAACAACTTAAAGAGATGAACGTGTTCACAATAATACTGCACTTTAAAACCTGTTTTCTTCTTGCTGTTCGTGAAGAAGTACTTTACGTTGGACCCTCACAATGTTAACTTATATTAAAGTACTTTCTGGATACTGaagtaaataatgaaataaacaaCAACCAAAACTCAGACTCCAAGTTTAAAGTCCTCAAACACGTAGCCTGCTCAAAGGAACATAAATAAAGATACTGATGTCATAATCAAACTTCTTCAGCTCTATAGTTCAcacaaaacataataataaatcaatatttAACTAAACAATGAATAGCTCCAACAACTTGTGTGACTTTCGTATAAGAAGAAgccaataaatcaattaattaacAGTTATATATCAATTAAAAGTCATGATTTACATTTCCAAACAGCTTCATTTAACAGCTGGAACACACCGGGCTCGTAACTGTCACGTAGCGTAGACACGTGTCTGATCGCATATTTCTACGCACCGGTCACAAAgctgtccatctctctctctctctctctctccctctctctctctctctctctctctctcgctctctctctctgtctctctct
>XM_039825100.1
TCGCTCCGGTTCCGCGTGGTGAAACTGCGGCTTCACAGGTAACGTTACTTTCTGTCCCGGTGTGCTGGATCTGAGCACCAGGATAGGGAAGCAAAGCGAAGGGGCAGCTGCCGGCGGTGCAGCGAGCCCGGTGGACAAAATGCCAGAAAGCCCGGAGAAAATCTCGTCGGTGTCGGCTCAGGAGCTGAAGGAACAGGGCAACCGTCTCTTTCTGAACCGCAAGTACCTGGAGGCTGCCGCCTGCTACAGCAAAGCCATAAGCCACAGTCCGTGTGTCCCAGCATACTACACCAACCGAGCGCTGTGCTACGTGAAGTTGCAGCAGTACGACAAAGCTCTGGCAGACTGCCGACACGCGCTGGAGCTCGACAGCCAGTCGGTCAAAGCTCACTTCTTCATGGGTCAGTGCCACCTGGAGATGGAGAGCTACGACGAAGCCATCGGCAACCTGCAGAAGGCCTATAACTTGGCGAAGGAGCAGCGTCTGAACTTTGGGGACGATATCCCCAGCGCTCTGCGGATCGCTAAGAAGCAGCGCTGGAACAacatggaggagaggaggatcAACCAGGAGAGCGAGCTGCACACCTACCTCACCAAACTCATCCTCTCGGAGAAGAAGAGAGAAGTGGAGGGCTGTAGACAGAAAGACGACGACAGCAGAATTCAAcacaatccaaacgagattcacACAAAACATGACAAGTATCTGTCAGACATGGAGGAGCTGTTCTGCCAAGTGGACGAGAAGAGGAAGAAGCGCGAGATCCCCGACTTCCTGTGTGGAAAGATCAGCTTTGAGTTGATGAGAGAGCCCTGCATCACTCCCAGCGGAGTCACCTACGACAGGAAAGACATCGAAGAGCACCTGCAGCGAGTCGGCCATTTTGACCCTGTGACGCGCTCTCCACTGACCCAAGATCAGCTCATCCCAAACCTGGCCATGAAGGAAGTCATcgatgcttttattttggagaACGGATGGGTGGAGGACTACTGACcaatgagaggagaggaagagaagtgATTTCTGACCGTGTCAGAGGGTCGTTGCTTTAATTTAAACACAAATCCCAGTTTGTTGACGTGTGTCCTGCAGAAATCATCAGAGAGCCGCCGGAGCAAACTAAACTTAAAGGAggaatatgtaatatatttactgtcttGATTCCTAAAATGACCACGATGTGTCATCATATATTAAGTGAACATACCGACAACAGTGCTagagccagtattttctccttttgaaatgtcCATATCGGTCTGTTTTTAGTTTTGGTCTGTGTGTTGCCAATTTTCACacccgggttgccagatattaaacgcaaacacacaaaaacaacatgcTGCAGCAACCAACCAACTAACCAAACAGGGTCAACAGAGAGAGATTCATTCTAACCGACCTTAAAAACAGTTGCATGACTACAGATGGGGAAATATTGGAGATAATACAAACTGAAATGAATGTAAAACCCACAAAAATCAAAGTTATGAAATCAagaaaaagccaaagaaaacaaATTCAGTTGAGAGAAGCATCACTAGAGGGCGCTGTCAGTCCTCTAGTAACACGAATGTTTCAGCAGCATTGGAACTAGTACTCAGAAGTactcaaatataaaaatatactatcacaagtaaaagtcctgctttcaaaatttgacttaaagtgctcatattatgctttttggcttcaAGTCCAACAGATTCTGTCCAAAAACAACTTAAAGAGATGAACGTGTTCACAATAATACTGCACTTTAAAACCTGTTTTCTTCTTGCTGTTCGTGAAGAAGTACTTTACGTTGGACCCTCACAATGTTAACTTATATTAAAGTACTTTCTGGATACTGaagtaaataatgaaataaacaaCAACCAAAACTCAGACTCCAAGTTTAAAGTCCTCAAACACGTAGCCTGCTCAAAGGAACATAAATAAAGATACTGATGTCATAATCAAACTTCTTCAGCTCTATAGTTCAcacaaaacataataataaatcaatatttAACTAAACAATGAATAGCTCCAACAACTTGTGTGACTTTCGTATAAGAAGAAgccaataaatcaattaattaacAGTTATATATCAATTAAAAGTCATGATTTACATTTCCAAACAGCTTCATTTAACAGCTGGAACACACCGGGCTCGTAACTGTCACGTAGCGTAGACACGTGTCTGATCGCATATTTCTACGCACCGGTCACAAAgctgtccatctctctctctctctctctctccctctctctctctctctctctctctctcgctctctctctctgtctctctct
>XM_039825101.1
atactCCACAGATTAATCGACGATTTTCTGTCCCGGTGTGCTGGATCTGAGCACCAGGATAGGGAAGCAAAGCGAAGGGGCAGCTGCCGGCGGTGCAGCGAGCCCGGTGGACAAAATGCCAGAAAGCCCGGAGAAAATCTCGTCGGTGTCGGCTCAGGAGCTGAAGGAACAGGGCAACCGTCTCTTTCTGAACCGCAAGTACCTGGAGGCTGCCGCCTGCTACAGCAAAGCCATAAGCCACAGTCCGTGTGTCCCAGCATACTACACCAACCGAGCGCTGTGCTACGTGAAGTTGCAGCAGTACGACAAAGCTCTGGCAGACTGCCGACACGCGCTGGAGCTCGACAGCCAGTCGGTCAAAGCTCACTTCTTCATGGGTCAGTGCCACCTGGAGATGGAGAGCTACGACGAAGCCATCGGCAACCTGCAGAAGGCCTATAACTTGGCGAAGGAGCAGCGTCTGAACTTTGGGGACGATATCCCCAGCGCTCTGCGGATCGCTAAGAAGCAGCGCTGGAACAacatggaggagaggaggatcAACCAGGAGAGCGAGCTGCACACCTACCTCACCAAACTCATCCTCTCGGAGAAGAAGAGAGAAGTGGAGGGCTGTAGACAGAAAGACGACGACAGCAGAATTCAAcacaatccaaacgagattcacACAAAACATGACAAGTATCTGTCAGACATGGAGGAGCTGTTCTGCCAAGTGGACGAGAAGAGGAAGAAGCGCGAGATCCCCGACTTCCTGTGTGGAAAGATCAGCTTTGAGTTGATGAGAGAGCCCTGCATCACTCCCAGCGGAGTCACCTACGACAGGAAAGACATCGAAGAGCACCTGCAGCGAGTCGGCCATTTTGACCCTGTGACGCGCTCTCCACTGACCCAAGATCAGCTCATCCCAAACCTGGCCATGAAGGAAGTCATcgatgcttttattttggagaACGGATGGGTGGAGGACTACTGACcaatgagaggagaggaagagaagtgATTTCTGACCGTGTCAGAGGGTCGTTGCTTTAATTTAAACACAAATCCCAGTTTGTTGACGTGTGTCCTGCAGAAATCATCAGAGAGCCGCCGGAGCAAACTAAACTTAAAGGAggaatatgtaatatatttactgtcttGATTCCTAAAATGACCACGATGTGTCATCATATATTAAGTGAACATACCGACAACAGTGCTagagccagtattttctccttttgaaatgtcCATATCGGTCTGTTTTTAGTTTTGGTCTGTGTGTTGCCAATTTTCACacccgggttgccagatattaaacgcaaacacacaaaaacaacatgcTGCAGCAACCAACCAACTAACCAAACAGGGTCAACAGAGAGAGATTCATTCTAACCGACCTTAAAAACAGTTGCATGACTACAGATGGGGAAATATTGGAGATAATACAAACTGAAATGAATGTAAAACCCACAAAAATCAAAGTTATGAAATCAagaaaaagccaaagaaaacaaATTCAGTTGAGAGAAGCATCACTAGAGGGCGCTGTCAGTCCTCTAGTAACACGAATGTTTCAGCAGCATTGGAACTAGTACTCAGAAGTactcaaatataaaaatatactatcacaagtaaaagtcctgctttcaaaatttgacttaaagtgctcatattatgctttttggcttcaAGTCCAACAGATTCTGTCCAAAAACAACTTAAAGAGATGAACGTGTTCACAATAATACTGCACTTTAAAACCTGTTTTCTTCTTGCTGTTCGTGAAGAAGTACTTTACGTTGGACCCTCACAATGTTAACTTATATTAAAGTACTTTCTGGATACTGaagtaaataatgaaataaacaaCAACCAAAACTCAGACTCCAAGTTTAAAGTCCTCAAACACGTAGCCTGCTCAAAGGAACATAAATAAAGATACTGATGTCATAATCAAACTTCTTCAGCTCTATAGTTCAcacaaaacataataataaatcaatatttAACTAAACAATGAATAGCTCCAACAACTTGTGTGACTTTCGTATAAGAAGAAgccaataaatcaattaattaacAGTTATATATCAATTAAAAGTCATGATTTACATTTCCAAACAGCTTCATTTAACAGCTGGAACACACCGGGCTCGTAACTGTCACGTAGCGTAGACACGTGTCTGATCGCATATTTCTACGCACCGGTCACAAAgctgtccatctctctctctctctctctctccctctctctctctctctctctctctctcgctctctctctctgtctctctct

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase CHIP-like isoform X1

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K09561 STUB1, CHIP; STIP1 homology and U-box containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825099.1 True 2375 mRNA 0.45 8 1500772 1509112
XM_039825100.1 False 2308 mRNA 0.45 8 1500772 1509035
XM_039825101.1 False 2284 mRNA 0.45 8 1500772 1507943

Neighbor

gene id symbol gene type direction distance location
LOC120575499 NA coding downstream 55449 1429165 ~ 1445323 (-)
LOC120573831 hspa6,LOC100700083 coding downstream 104304 1392492 ~ 1396468 (-)
taok2a LOC103363962 coding downstream 117044 1341826 ~ 1383728 (-)
cdipt cdipt,LOC103363963 coding downstream 166346 1325679 ~ 1334426 (-)
LOC120574280 NA coding downstream 198481 1298376 ~ 1302291 (-)
LOC120573930 LOC103363959,LOC101479828,LOC102300806,LOC102197709 coding upstream 11274 1520386 ~ 1543410 (-)
LOC120574288 LOC108233705,LOC103393603 coding upstream 111562 1620674 ~ 1647069 (-)
LOC120574768 LOC103358687,LOC104930242 coding upstream 495764 2004876 ~ 2058639 (-)
ilf3b ilf3,LOC102795819 coding upstream 655608 2164720 ~ 2209257 (-)
LOC120573916 LOC103358683,LOC104942087,LOC104930238,LOC103393647 coding upstream 705482 2214594 ~ 2224968 (-)
G150765 NA non-coding downstream 12458 1485602 ~ 1488314 (-)
G150764 NA non-coding downstream 18799 1481743 ~ 1481973 (-)
G150763 NA non-coding downstream 29539 1470830 ~ 1471233 (-)
G150756 NA non-coding downstream 53585 1446673 ~ 1447187 (-)
G150679 NA non-coding downstream 159038 1235192 ~ 1341734 (-)
G150775 NA non-coding upstream 10578 1519690 ~ 1519906 (-)
G150776 NA non-coding upstream 10846 1519958 ~ 1520279 (-)
G150855 NA non-coding upstream 79656 1588768 ~ 1589308 (-)
G150863 NA non-coding upstream 80312 1589424 ~ 1738607 (-)
G150858 NA non-coding upstream 81560 1590672 ~ 1843537 (-)
LOC120575421 LOC106675350 other downstream 35464 1461342 ~ 1465308 (-)
LOC120575422 LOC106675350 other downstream 39791 1456747 ~ 1460981 (-)
LOC120573832 maz,LOC101481851,LOC103375157,LOC102304652,LOC101067998,LOC105024369,LOC102195162 other downstream 178739 1302340 ~ 1322033 (-)
G150705 NA other downstream 260782 1238242 ~ 1239990 (-)
sh2b1 LOC102305267,LOC103374915 other downstream 287206 1153429 ~ 1213566 (-)
LOC120574289 NA other upstream 82577 1591689 ~ 1739925 (-)
LOC120574287 col1,LOC108233705,LOC103393603,LOC106536191 other upstream 97103 1606215 ~ 1620471 (-)
G150856 NA other upstream 215010 1724122 ~ 1739481 (-)
LOC120573867 LOC108236047,LOC107376309,LOC101475947,LOC100695382,LOC106520692,LOC105918010 other upstream 306953 1816065 ~ 1822128 (-)
LOC120573864 NA other upstream 336628 1845740 ~ 1872092 (-)

Expression


Co-expression Network