XLOC_004862 (tha1)


Basic Information

Item Value
gene id XLOC_004862
gene name tha1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 34378733 ~ 34397139 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009601
CATGTCTGAAAGCTCCGGGTCGTTTACATCAATGATTATCGAAAACAGTTTACCAAAGTTCAGTGAAGTCCTGTGAATTGATGCACTTTATAGTTAGCATACGTTTATATGACAGTGCATAAAGAAAGACATGAGCTCCAAAACACTAACGGTTATAGTTCGTTTAGTCCGTCATTGTTTATACAAACCTCGTGTTTTTCGGGTAAATCCGGTGCGGTTGTATTATGGGTCTCCGCAGACGGTAACGGGATCCGCCATTCGCACGGTAGACCTCCGGAGCGACACCGTCACTAAACCCGGAGCAGCGATGCGGAGAGCCATGGCGGAAGCGGAGGTCGGAGACGATGTGTTTGGAGAAGACCCTACAGTTAATGAACTACAGAAAATAGCTGCTGAAATGTTTGGCATGAAAGCGGCTTTATATGTGCCCTCAGGAACGATGAGTAACCTGATTGCAGTTATGGTCCACTGCAGGGAGAGGGGTGATGAGATGATAGCTGGTGATCTTTCtcatattcatatttatgagCAGGGAGGAAGTGCACAGCTCGCAGGCGTCCATTCTGCAACACTCCGTACCCTCGGCGATGGCACCTTTGACCTGGACCAGCTGATCTCCAAGATCCGCCATGGTTACCCTGACCCACACTACCCACGCTCACGCCTGGTGTGTgttgaaaacacacacaatatcCAGGGAGGCCGCGTCCTCCCACTCGCCTTCCTGCAGGAGCTTCGCTCTGTGGCTGATCAGTTTGGTCTGGCGGTGCATATGGATGGAGCGAGGGTGATGAACGCAGCTGTAGCTCTGGGTGTTCAGCCCTCTGCTATACTACAGCACTGTCATTCTgtcagtgtgtgtctgtctaAGGGACTCGGGGCACCTGTGGGCTCCATGCTAGGAGGGTCAAAAGATTTCATACAGAGAGCGGTGCGTGTCCGCAAGGTGCTTGGCGGTGGAATGCGCCAGTTGGGTATCTTGGCAGCAGCTGGTAAGATCGCCCTGTCAGATATGATTGGAAGACTGGAGGAGGACCACAGGAACGCCAGACACTTTGCTCAAGCACTGTTAGAGAGTGACCCTGCACTGTATCAGGTTGATCTGAACACCGTTCAAACCAACATCGTGAGGTTTTCTCTGAGGGAGGGTCAGATGAGCCCGGTGGAGTTCTGTGAGAGGATGGCAGGCGTAGATGAGGAAGAAGTGAAGGCTTTGGGTCAAGGGGTACCTGTTCTGATGTTCCCCCATGTTGGGGACACAGTCAGGGCTGTGTGGCACCTGGGCATCAGTGAGGAAGACACTCAGCTGGCTATACTGAAGGCTCAGTTTGTGGCTCAACAGCACAAGCGGAGGTCCATCAGGGCAGCGTGAGAGAAGTCCTTTATCTGCTCTTTGTAAAACATTTGACTTTTTTGGCACTCACTTTGACTCACCCACTTAAGGGAAATAAATTATTCATCTAAAAAAA

Function

symbol description
tha1 Predicted to enable L-allo-threonine aldolase activity. Predicted to be involved in glycine biosynthetic process and threonine catabolic process. Predicted to act upstream of or within cellular amino acid metabolic process. Predicted to be active in cytosol. Orthologous to human THA1P (threonine aldolase 1, pseudogene).

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0006545 glycine biosynthetic process biological_process
GO:0006567 threonine catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0008732 L-allo-threonine aldolase activity molecular_function
GO:0016829 lyase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-14 Predicted to enable L-allo-threonine aldolase activity. Predicted to be involved in glycine biosynthetic process and threonine catabolic process. Predicted to act upstream of or within cellular amino acid metabolic process. Predicted to be active in cytosol. Orthologous to human THA1P (threonine aldolase 1, pseudogene).

Ensembl:

ensembl_id ENSDARG00000076225

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009601 True 1469 mRNA 0.51 7 34378733 34397139

Neighbor

gene id symbol gene type direction distance location
XLOC_004861 socs3b coding upstream 101268 34258139 ~ 34277465 (+)
XLOC_004860 cyth1b coding upstream 185778 34051434 ~ 34192955 (+)
XLOC_004859 sfxn2 coding upstream 389848 33975065 ~ 33988885 (+)
XLOC_004858 trim8b coding upstream 443211 33916939 ~ 33935522 (+)
XLOC_004857 mfsd13a coding upstream 463610 33894396 ~ 33915123 (+)
XLOC_004863 NA coding downstream 62530 34459669 ~ 34470463 (+)
XLOC_004864 si:dkey-21c1.8 coding downstream 335123 34732262 ~ 34746331 (+)
XLOC_004865 slc38a10 coding downstream 366656 34763795 ~ 34822821 (+)
XLOC_004866 tepsin coding downstream 430669 34827808 ~ 34842512 (+)
XLOC_004867 NA coding downstream 447303 34844442 ~ 34846842 (+)
XLOC_004854 NA non-coding upstream 772145 33595902 ~ 33606588 (+)
XLOC_004855 NA non-coding upstream 773295 33602524 ~ 33605438 (+)
XLOC_004850 NA non-coding upstream 1035448 33340215 ~ 33343285 (+)
XLOC_004848 BX936416.1 non-coding upstream 1426837 32951782 ~ 32951896 (+)
XLOC_004846 NA non-coding upstream 1852387 32431614 ~ 32526346 (+)
XLOC_004869 CR854979.1 non-coding downstream 484638 34881777 ~ 34881895 (+)
XLOC_004874 NA non-coding downstream 661008 35058147 ~ 35059608 (+)
XLOC_004876 CU459210.1 non-coding downstream 709436 35106575 ~ 35107998 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_01354605_01373894 THA1 coding CI01000055 null 1354389 ~ 1376537 (-)