smurf1 (smurf1,LOC102787679,LOC103393300)


Basic Information

Item Value
gene id smurf1
gene name smurf1,LOC102787679,LOC103393300
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5821626 ~ 5840646 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825199.1
CGTCACTACGTGCTTGAGCCTGCCCGAAAATGCTCTCCCGTGTTGTTGGGTTTCGAAAGAGCGCAGGACTTTGCGatgaaataatacatttttaccCGTGAAGAAAACGAAAACAAACCGCATGTTTTTAAACTGAAGTTGTTCGCGTTCCCATTAAGTGGTGAAACGGTGATTTTGGGAGACTCCAAGGGGAAGTTTGTGTGATCGTTTTCCCGGAGTGATGTCGAATCCAGGGACTCGGAGGAACGGGTCCAGCATCAAAATCCGACtgacagTATTATGTGCCAAGAACCTCGCAAAGAAAGACTTCTTTCgCCTGCCAGATCCATTTGCCAAGGTTGTGGTGGACGGATCAGGTCAATGCCACTCTACAGACACAGTCAAGAGCACACTGGACCCCAAATGGAATCAGCACTACGACCTCTACATTGGAAAGACAGACTCCATCACCATCAGTATATGGAACCACAAGAAGATCCATAAAAGACAGGGGGCGGGCTTCCTGGGCTGCATACGACTGCTGTCAAACGCCATCAGCAGGCTAAAAGACACAGGATACCAGCGTCTAGATCTATGTAAGCTGAACCCCTCGGACAGTGACGCAGTGCGGGGGCAGATAGTAGTGAGCTTACAGACGCGAGACCGTATCGGCAGCGGAGGCCCTGTGGTGGACTGCAGAGGCCTGTTGGAAAATGATGGgcctgtgTTCGAGGGATGTTTCAGTGAAGAGCCGCTACCCTACTCCGACCCCACTGGTGCGGCGGGGGGTGGGAACTGTCGGCTCGACTCACCCGGTCAGGAGGGCCGTCTTCAGACGCAGAGAATCAGAGGGCAGGACTCCAGAGGCCATGGCCACACCCCTCAGAACAGACCGCATGGGCACCAACCGCCTGATCTGCCAGAGGGATACGAGCAACGAACAACAGTGCAGGGCCAGGTGTACTTCCTTCACACACAGACGGGCGTCAGCACCTGGCACGACCCTCGAATACCGCGGGACCTGGCCAGTGTGAGCTGTGAGGAGCTTGGGCCGCTGCCAGTGGGCTGGGAGGTCCGAAGCACTGTGTCGGGCCGGATCTACTTTGTGGACCACAACAACCGAACAACACAGTTCACAGACCCGCGCCTACACACCATTATCAgCCAGCAATCCCAAGCGAAGGAATCCTCACAAGCCCCCCCGATGGATGTGGGGGGCGAGGAAGGGGGAGGTGGAGGAGTGGGCGGCGGAGGAGATGGAGATGTTGCAGCGCGCTACGAGAGAGACTTGGTCCATAAATTGAAGCTGCTCCGCCACGAGCTGTCCTTGCAGCAGCCTCAAGCAGGACACTGTCGCATAGAGGTGTCCCGAGAGGAGATCTTTGAGgagTCCTATCGGCAGATAATGAAGATGAGGCCCAAGGACCTGAAGAAGCGTCTGATGGTGAAGTTTAGGGGAGAGGAGGGCCTGGACTATGGTGGGGTGGCCAGGGAGTGGCTGTACCTGCTGTGTCATGAAATGTTGAACCCCTATTACGGCCTGTTCCAGTACTCCACAGACAATATCTACACACTACAGATCAACCCCGACTCCTCCATCAACCCTGACCACCTGTCATATTTCCACTTTGTGGGCCGTGTGATGGGCCTGGCAGTTTTTCACGGTCACTACATCAACGGGAGCTTCACGCTGCCCTTCTACAAACAGCTGCTAGGCAAACCCATCCAGCTCAACGACCTGGAGACGACCGACCCGGAGTTGCACAAGAGCCTCGTCTGGATACTAGAGAATGACATCACTTCAGTCCTCGACCACACTTTCTGCGTGGAGCACAATGCCTTTGGGAAGTTCTTGCAACATGAACTCAAACCTAATGGCCGCAATTTGCCTGTCACTGAGGAGAACAAAAAAGAATACGTCAGaCTTTATGTAAACTGGAGGTTTATGCGTGGAATTGAAGCCCAGTTTCTGGCTCTACAGAAGGGATTCAGTGAGCTCATCCCCCAGCACCTCCTCAAACCTTTCGACCATAAAGAACTTGAGTTGATCATCGGTGGGCTGGGGAAAATAGATCTTGCAGACTGGAAGACTAACACCCGCCTGAAGCACTGCACAAGTGAAAGCAACGTGGTGCGGTGGTTCTGGCAGGCAGTGGAGGCCTtcagtgaggagaggagagggcgCCTCCTGCAGTTTGTCACAGGCTCCACCAGGGTCCCCTTACAAGGGTTCAAAGCGCTGCAGGgTTCTACAGGTTCTGCAGGACCAAGGCTCTTCACCATCCATTTGATAGATGCCAACACAGACAACCTGCCCAAGGCTCACACATGTTTTAACCGGATAGACATCCCTCCCTACGAGTCTTACGAGAAACTCTATGAGAAACTGCTGACGGCTGTGGAGGAGACCTGCGGCTTCGCCGTGGAGTGAGGACTCCACAAGCAAACCAACAGTCACACTTGCACTTGCACACAGACTATTTGACAttttacacatatacacacacacatcaacagaaTATCAAGTATACGCGGAGTATACGGAGCGGCCAAGCATCACGAGAACACGCGGTCTCTTGCCACCTCTTCACCACCGAACTGTTGGGGTTAAAGGAGGAACCACAGCGGGAGaggaaaagatttaaaaaaaaaaacagacaaaaaaaaaaaaagtattttaaaaattttcaaatgttttgaaGAAGCATTTATATCCTTAAGTTTTAACAAGCTATGATGTCATTCTTCAGAATGTCTACCGCCACAGCGAATTTGACTCCCAAGACATTCGAGTCAACGGACAGAATCGGCCAATCACATGCGAGCCTGCGAACAGAGACCTTTTGAAATCAGACATGAAGAACAAGGCAGAGACTGATTGTCTTTCTGTCTGACATGCCTATTGATTGACTAGTATTCATGCTTCATGTTTAACCACTGTCGTGTATCAGAACGTGTGCATGTACATGtgattgtgtgattgtgtgagaGAGTGGGTGAGTGATTgagggagtgagtgagtgtgtcagACATGGCACCTGGTTACGCTGTAAAAATGATCAAATGAGCCTGCTCCTCTGTTTGCTAACATTTTGTCTCTTCCATTTGTATCTGCGACCACTCTGATCCACtctgatattttattatttattactaaGTGATTACTGACCAAGCTGCTATATGCTCTACAGAGAGCCCACACTAATCTCTTCATCACCCCCTCTACCAGAGTTGAAGGGTCAATTCACTTGCAATTCAAGTAATCCACAAAGTGggttttattgaattttgttacttttttttttttttttaacattcatatTATTGCAGAGAAATGCTCTTGTCAGTGTATGGAAAAACTGTTAGTGTTTTGGTGTTTGAAATACcatgttacatttttttatttgacgtGAAAGGGATTGATCCTCCCAGCCCTATTTTTGAAATCTAACTCTACTGACATTATGGAGAGGTCCGAGGGCTTGAACTAGATATTTAACTAAATGAGCCACGAGGATGGAAAGAAGGAGTCAGCTTCAGGAATTCTTTGGTTGTATGTGACATGTATAATAAAATCTCAAAACTTT
>XM_039825200.1
CGTCACTACGTGCTTGAGCCTGCCCGAAAATGCTCTCCCGTGTTGTTGGGTTTCGAAAGAGCGCAGGACTTTGCGatgaaataatacatttttaccCGTGAAGAAAACGAAAACAAACCGCATGTTTTTAAACTGAAGTTGTTCGCGTTCCCATTAAGTGGTGAAACGGTGATTTTGGGAGACTCCAAGGGGAAGTTTGTGTGATCGTTTTCCCGGAGTGATGTCGAATCCAGGGACTCGGAGGAACGGGTCCAGCATCAAAATCCGACtgacagTATTATGTGCCAAGAACCTCGCAAAGAAAGACTTCTTTCgCCTGCCAGATCCATTTGCCAAGGTTGTGGTGGACGGATCAGGTCAATGCCACTCTACAGACACAGTCAAGAGCACACTGGACCCCAAATGGAATCAGCACTACGACCTCTACATTGGAAAGACAGACTCCATCACCATCAGTATATGGAACCACAAGAAGATCCATAAAAGACAGGGGGCGGGCTTCCTGGGCTGCATACGACTGCTGTCAAACGCCATCAGCAGGCTAAAAGACACAGGATACCAGCGTCTAGATCTATGTAAGCTGAACCCCTCGGACAGTGACGCAGTGCGGGGGCAGATAGTAGTGAGCTTACAGACGCGAGACCGTATCGGCAGCGGAGGCCCTGTGGTGGACTGCAGAGGCCTGTTGGAAAATGATGGgcctgtgTTCGAGGGATGTTTCAGTGAAGAGCCGCTACCCTACTCCGACCCCACTGGTGCGGCGGGGGGTGGGAACTGTCGGCTCGACTCACCCGGTCAGGAGGGCCGTCTTCAGACGCAGAGAATCAGAGGGCAGGACTCCAGAGGCCATGGCCACACCCCTCAGAACAGACCGCATGGGCACCAACCGCCTGATCTGCCAGAGGGATACGAGCAACGAACAACAGTGCAGGGCCAGGTGTACTTCCTTCACACACAGACGGGCGTCAGCACCTGGCACGACCCTCGAATACCGCGGGACCTGGCCAGTGTGAGCTGTGAGGAGCTTGGGCCGCTGCCAGTGGGCTGGGAGGTCCGAAGCACTGTGTCGGGCCGGATCTACTTTGTGGACCACAACAACCGAACAACACAGTTCACAGACCCGCGCCTACACACCATTATCAgCCAGCAATCCCAAGCGAAGGAATCCTCACAAGCCCCCCCGATGGATGTGGGGGGCGAGGAAGGGGGAGGTGGAGGAGTGGGCGGCGGAGGAGATGGAGATGTTGCAGCGCGCTACGAGAGAGACTTGGTCCATAAATTGAAGCTGCTCCGCCACGAGCTGTCCTTGCAGCAGCCTCAAGCAGGACACTGTCGCATAGAGGTGTCCCGAGAGGAGATCTTTGAGgagTCCTATCGGCAGATAATGAAGATGAGGCCCAAGGACCTGAAGAAGCGTCTGATGGTGAAGTTTAGGGGAGAGGAGGGCCTGGACTATGGTGGGGTGGCCAGGGAGTGGCTGTACCTGCTGTGTCATGAAATGTTGAACCCCTATTACGGCCTGTTCCAGTACTCCACAGACAATATCTACACACTACAGATCAACCCCGACTCCTCCATCAACCCTGACCACCTGTCATATTTCCACTTTGTGGGCCGTGTGATGGGCCTGGCAGTTTTTCACGGTCACTACATCAACGGGAGCTTCACGCTGCCCTTCTACAAACAGCTGCTAGGCAAACCCATCCAGCTCAACGACCTGGAGACGACCGACCCGGAGTTGCACAAGAGCCTCGTCTGGATACTAGAGAATGACATCACTTCAGTCCTCGACCACACTTTCTGCGTGGAGCACAATGCCTTTGGGAAGTTCTTGCAACATGAACTCAAACCTAATGGCCGCAATTTGCCTGTCACTGAGGAGAACAAAAAAGAATACGTCAGaCTTTATGTAAACTGGAGGTTTATGCGTGGAATTGAAGCCCAGTTTCTGGCTCTACAGAAGGGATTCAGTGAGCTCATCCCCCAGCACCTCCTCAAACCTTTCGACCATAAAGAACTTGAGTTGATCATCGGTGGGCTGGGGAAAATAGATCTTGCAGACTGGAAGACTAACACCCGCCTGAAGCACTGCACAAGTGAAAGCAACGTGGTGCGGTGGTTCTGGCAGGCAGTGGAGGCCTtcagtgaggagaggagagggcgCCTCCTGCAGTTTGTCACAGGCTCCACCAGGGTCCCCTTACAAGGGTTCAAAGCGCTGCAGGGTTCTGCAGGACCAAGGCTCTTCACCATCCATTTGATAGATGCCAACACAGACAACCTGCCCAAGGCTCACACATGTTTTAACCGGATAGACATCCCTCCCTACGAGTCTTACGAGAAACTCTATGAGAAACTGCTGACGGCTGTGGAGGAGACCTGCGGCTTCGCCGTGGAGTGAGGACTCCACAAGCAAACCAACAGTCACACTTGCACTTGCACACAGACTATTTGACAttttacacatatacacacacacatcaacagaaTATCAAGTATACGCGGAGTATACGGAGCGGCCAAGCATCACGAGAACACGCGGTCTCTTGCCACCTCTTCACCACCGAACTGTTGGGGTTAAAGGAGGAACCACAGCGGGAGaggaaaagatttaaaaaaaaaaacagacaaaaaaaaaaaaagtattttaaaaattttcaaatgttttgaaGAAGCATTTATATCCTTAAGTTTTAACAAGCTATGATGTCATTCTTCAGAATGTCTACCGCCACAGCGAATTTGACTCCCAAGACATTCGAGTCAACGGACAGAATCGGCCAATCACATGCGAGCCTGCGAACAGAGACCTTTTGAAATCAGACATGAAGAACAAGGCAGAGACTGATTGTCTTTCTGTCTGACATGCCTATTGATTGACTAGTATTCATGCTTCATGTTTAACCACTGTCGTGTATCAGAACGTGTGCATGTACATGtgattgtgtgattgtgtgagaGAGTGGGTGAGTGATTgagggagtgagtgagtgtgtcagACATGGCACCTGGTTACGCTGTAAAAATGATCAAATGAGCCTGCTCCTCTGTTTGCTAACATTTTGTCTCTTCCATTTGTATCTGCGACCACTCTGATCCACtctgatattttattatttattactaaGTGATTACTGACCAAGCTGCTATATGCTCTACAGAGAGCCCACACTAATCTCTTCATCACCCCCTCTACCAGAGTTGAAGGGTCAATTCACTTGCAATTCAAGTAATCCACAAAGTGggttttattgaattttgttacttttttttttttttttaacattcatatTATTGCAGAGAAATGCTCTTGTCAGTGTATGGAAAAACTGTTAGTGTTTTGGTGTTTGAAATACcatgttacatttttttatttgacgtGAAAGGGATTGATCCTCCCAGCCCTATTTTTGAAATCTAACTCTACTGACATTATGGAGAGGTCCGAGGGCTTGAACTAGATATTTAACTAAATGAGCCACGAGGATGGAAAGAAGGAGTCAGCTTCAGGAATTCTTTGGTTGTATGTGACATGTATAATAAAATCTCAAAACTTT

Function

symbol description
smurf1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including negative regulation of BMP signaling pathway; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm. Is expressed in alar plate midbrain region; axis; midbrain; neural plate; and notochord. Orthologous to human SMURF1 (SMAD specific E3 ubiquitin protein ligase 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase SMURF1 isoform X1

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K04678 SMURF; E3 ubiquitin ligase SMURF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825199.1 True 3566 mRNA 0.49 18 5821626 5840646
XM_039825200.1 False 3557 mRNA 0.49 18 5821626 5840646

Neighbor

gene id symbol gene type direction distance location
rnf216 rnf216,LOC107591749,LOC106595856 coding downstream 3506 5794107 ~ 5818120 (-)
actb2 actb,LOC102799139 coding downstream 91304 5725886 ~ 5730322 (-)
tnrc18 tnrc18 coding downstream 104078 5661861 ~ 5717548 (-)
cbx7a NA coding downstream 280425 5533856 ~ 5541201 (-)
st13 st13 coding downstream 342959 5466251 ~ 5478667 (-)
wipi2 wipi2 coding upstream 34096 5874742 ~ 5881666 (-)
ap5z1 ap5z1 coding upstream 64292 5904938 ~ 5916956 (-)
c1qtnf6a LOC101473735,LOC102300081,LOC102790480,LOC100705049 coding upstream 118546 5959192 ~ 5967183 (-)
il2rb NA coding upstream 135902 5976548 ~ 5986907 (-)
LOC120574102 LOC103393291,LOC103147375,LOC102224681,LOC107672151,LOC105890774,LOC105029658,LOC101072687,LOC107583318 coding upstream 155206 5995852 ~ 6004000 (-)
G152298 NA non-coding downstream 29451 5791967 ~ 5792175 (-)
G152280 NA non-coding downstream 38265 5737931 ~ 5783361 (-)
G152270 NA non-coding downstream 160728 5660086 ~ 5660898 (-)
G152256 NA non-coding downstream 215538 5601313 ~ 5606088 (-)
G152249 pdap1,LOC102785718 non-coding downstream 233891 5583379 ~ 5587735 (-)
G152302 NA non-coding upstream 33131 5873777 ~ 5874308 (-)
G152329 NA non-coding upstream 108168 5948814 ~ 5949019 (-)
G152330 NA non-coding upstream 108631 5949277 ~ 5949495 (-)
G152362 NA non-coding upstream 168601 6009247 ~ 6010851 (-)
G152400 NA non-coding upstream 269093 6109739 ~ 6109942 (-)
atp5mf atp5j2,LOC102786280 other downstream 207904 5574680 ~ 5613722 (-)
bud31 bud31,LOC106595689 other downstream 238762 5580263 ~ 5582864 (-)
top3a top3a,LOC102783137 other downstream 254087 5549291 ~ 5567539 (-)
G152114 rbx1 other downstream 357208 5461846 ~ 5464418 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other downstream 594385 5178316 ~ 5227241 (-)
LOC120574101 NA other upstream 151291 5991937 ~ 5995189 (-)
G152441 LOC104944083,LOC103371237,LOC107087166,LOC105933549,LOC100701083,LOC101478422 other upstream 341762 6182408 ~ 6228114 (-)
G152567 NA other upstream 879138 6719784 ~ 6720643 (-)
arhgdig NA other upstream 932234 6772880 ~ 6801536 (-)
grin2aa grin2a,LOC102780805 other upstream 1729072 7569718 ~ 7723914 (-)

Expression


Co-expression Network