LOC120574768 (LOC103358687,LOC104930242)


Basic Information

Item Value
gene id LOC120574768
gene name LOC103358687,LOC104930242
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2004876 ~ 2058639 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825206.1
tcttcttctcttttcactGGCAGCTTTTTCGTGTGGATTAATCTGTCTGTTTGGGCTTCTTTTTGAGGCAGGCACAAAGAaaatagacagacagaggtATTTTGGAAGTGGGAGGGGATTGAGGCAAAGATGCACAGGTGGGGCGCAGATTGAAAAcagccagtttgtttttgcttggtGAACACAGAGGCAAGGCTGAGGTGGAGCGTTGCTCAGGGCTCACAGCTATTCATTGGGAGGACAGGTTGGACTGGTTTGCTGCTCCACATTACAAGTGTTTCCCCCGCTCTGGCTCACTACAAATCATCAGCAGAGAGACGCTGAGGAAGGAAGGAACCAGATAGAAGATAGAAAGTGGCTTTGGAAAGACTCAAAGTACATTTCAACATTTGGCCCAGAGAGGAATCTCAACATGCCCGAGGAAAGGGAAGGAGAATTTTATGGAAAGAATGGCGAGCCAAGGAAGTTCGACCCGACATTCAAGGGCCCGATCCAGAacagGGGCTGCACAGACATCGTGTGCTGCATCCTCTTCATTATTGCCATAGTGGCTTATATTGCAGTGGGAATACTCGCCTGGTCCCAGGGCGACCCCAGGAAGGTGATCTACCCCACAGACAGTCGAGGCCAGTTCTGTGGGCAGGCTGGCACGCCACTTGAggACAAGCCTGTGTTGTTCTACTTCAACATCATGAAGTGTGCCAGCCCCATGGTGCTGCTGGAGTTCCAGTGTCCGACCACACAGATGTGTGTGGAGAAGTGCCCCGAAAAGTTCATGACATTACTCAAAGCCTACACCAACAAAAATGACTTTGACTACTACAAGACCTTCTGCAAGGAAGGTGTGACTAACACAATGGGAGCACCAGAAATCCTGAAGCAGGGTCTCTGTCCTGCCATGCTGATGCCCAGCAAACCCTTCACTCGCAGGTGTTTCCCAGCGTTGGGCGAGAGCGGAGGGGTGATAACTGTTGGAAACAACTCTAAATTCGACGATGGACGGGGAAACATGAGAGACGCCAAGGACCTTTTGGATGGAGTCACGAACGCCACAGTGGTCATCGAGGCGCGCCAGGTGGTCATGAAAATCTTTGAGGATTTCACCCAGTCCTGGTACTGGATCCTGATagGGTTGGTTATCGCCATGCTCACCAGCCTGCTCTTCATCGTCCTCCTGCGCTTCCTGGCAGGGATCATGGTCTGGGTCATGATTGTCATGGTGATACTGGTCATAGGATACGGTATCTTCCACTGCTACATGGAGTACGCTGCTCTTAAGGGAACAGCGGGCTCGGACGTGACGTTACAGCAGCTCGGCTTCCAGACGGACTTCGCGGTCTACCTGCAGATCAGACAGACCTGGCTGGCCTTCAtGATTATCCTGGCCATCGTGGAGGTCATCATCCTCCTGCTGCTCATCTTCCTCAGGAAGAGGATCCTCATCGCCATCGCTCTCATCAAAGAAGCCAGCAGAGCCATCGGACATGTGATGTCGTCTCTTTTCTACCCGCTGTTCACTTTCGTCCTGCTGGCCATGGTGGTCTCCTACTGGGCGGTCACCGCTGTCTTCTTGTCTACCTCTAATGAACCCATCTACAAAGTCTTCAACGAGACGGCATGCGACTACTCGAGAACGACTTGTAATCCAGCGAACTACTCCACCAGTCCTGAGAAAGCAAAGTGCCCCGACTCCATGTGCCTTTTCGCCTTCTATGGAGGGGAGACCGCGTACCACAAATACCTGATCGGCCTGCAGTTCTACAAcgtcttcctcttcttctggtGTGCCAACTTCGTCACTGCTCTGGGACAGATGACCCTGGCCGGGGCCTTCGCCTCGTACTACTGGGCCTTCGTCAAGCCGGATGACATGCCTGCCTTCCCAGTGTTCGCTTCCCTCGGGAGatctctcagGTATCACACAGGGACTCTGGCGTTCGGTTCCCTTATCCTCTCAATCGTTCAGATCATCAGGGTTTTGCTGGAGTATCTGGACCACAAGCTGCAAGGAGCCCAAAATAAGTTTACCAAGTTCCTGTTGTGCTGTCTGAAGTGCTGCTTTTGGTGTCTGGAGAAATTTGTCAAGTTCATAAACAGAAATGCCTACATCATGGTGGCGATATACGGCAAAAACTTCTGCACCTCCGCCAGAGATGGCTTCTTCCTCCTCATGAGGAACATGGTCAGGGTGGCTGTCTTGGACAAAGTGACAGATTTCCTCTTGTTTTTGGGCAAACTGCTCATCGTTGGGCTCGTGGGGATCTTtgccttctttttcttctcggGGAGAGTGAAGGCCTTCGAGAGTACAGCCCCCCATCTCCACTACTACTGGGTACCCATCCTGACTGTGGTGGTTCTCTCCTACTTCATCGCCCATGGCTTCTTCAGCGTCTACGCCATGTGTGTGGACACGCTCTTCCTCTGTTTCTTGGAGGATCTGGAGAGGAACGATGGCAGCGCAGAGCGGCCCTACCTGATGCCCGAGAGCCTCCGAAAAGTCCTGAATaagaagaacaagaaggagCCGGCACAGTAAAGAACTGGGGGGTGCCGTGTCATTTCTCCCATGCTCCCTTGTTCCAACCGCtcaatagaccttttttcacagcagacatgttgacttgtcatagtaggaacagcacaggtgtattcaaaacccattaatgatggctgcattcca

Function

NR:

description
PREDICTED: choline transporter-like protein 2 isoform X1

GO: NA

KEGG:

id description
K15377 SLC44A2_4_5; solute carrier family 44 (choline transporter-like protein), member 2/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825206.1 True 2683 mRNA 0.52 22 2004876 2058639

Neighbor

gene id symbol gene type direction distance location
LOC120574288 LOC108233705,LOC103393603 coding downstream 357807 1620674 ~ 1647069 (-)
LOC120573930 LOC103363959,LOC101479828,LOC102300806,LOC102197709 coding downstream 461466 1520386 ~ 1543410 (-)
LOC120574716 LOC102301616,LOC103363960,LOC100701445 coding downstream 495764 1500772 ~ 1509112 (-)
LOC120575499 NA coding downstream 559553 1429165 ~ 1445323 (-)
LOC120573831 hspa6,LOC100700083 coding downstream 608408 1392492 ~ 1396468 (-)
ilf3b ilf3,LOC102795819 coding upstream 106081 2164720 ~ 2209257 (-)
LOC120573916 LOC103358683,LOC104942087,LOC104930238,LOC103393647 coding upstream 155955 2214594 ~ 2224968 (-)
si:ch211-194b1.1 wiz,LOC107731472 coding upstream 296803 2355442 ~ 2433220 (-)
pglyrp6 NA coding upstream 379463 2438102 ~ 2450469 (-)
LOC120574080 gfi1,LOC102083319,LOC102796239,LOC103376798,LOC101077887 coding upstream 679296 2737935 ~ 2750253 (-)
G151006 NA non-coding downstream 3473 2001006 ~ 2001403 (-)
G150858 NA non-coding downstream 161339 1590672 ~ 1843537 (-)
G150860 NA non-coding downstream 266025 1723700 ~ 1738851 (-)
G150863 NA non-coding downstream 266269 1589424 ~ 1738607 (-)
G150862 NA non-coding downstream 268593 1698862 ~ 1736283 (-)
G151005 NA non-coding upstream 8067 2066706 ~ 2067646 (-)
G151024 gcdh,LOC107718595,LOC107563244 non-coding upstream 55293 2113932 ~ 2119908 (-)
G151026 NA non-coding upstream 68511 2127150 ~ 2128852 (-)
G151030 NA non-coding upstream 151880 2210519 ~ 2212318 (-)
G151031 NA non-coding upstream 154316 2212955 ~ 2214142 (-)
LOC120573864 NA other downstream 132784 1845740 ~ 1872092 (-)
LOC120573867 LOC108236047,LOC107376309,LOC101475947,LOC100695382,LOC106520692,LOC105918010 other downstream 182748 1816065 ~ 1822128 (-)
LOC120574289 NA other downstream 264951 1591689 ~ 1739925 (-)
G150856 NA other downstream 265395 1724122 ~ 1739481 (-)
LOC120574287 col1,LOC108233705,LOC103393603,LOC106536191 other downstream 384405 1606215 ~ 1620471 (-)
farsa farsa other upstream 74093 2132732 ~ 2161724 (-)
G151146 NA other upstream 341170 2399809 ~ 2805411 (-)
G151216 LOC106957010,LOC107376217,LOC103393680 other upstream 815279 2873918 ~ 2896343 (-)
G151227 LOC103393680 other upstream 852687 2911326 ~ 2915367 (-)
G151344 smarca4 other upstream 1253088 3311727 ~ 3316915 (-)

Expression


Co-expression Network