srebf2 (srebf2,LOC102798161)


Basic Information

Item Value
gene id srebf2
gene name srebf2,LOC102798161
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4871597 ~ 4897912 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825223.1
TGTGAATGACGTAATGAGCGTAAAACAAGATGGCGGCGACTTAAGCATCTATCGGTTTGAACTAGTTTATCGCCACAGAGGTCTGCCTCTCTTGAGGCTTTATAGTGTTCTCTCACGGTTGGTCCGGGAAAGAACAACCTTTTCGGTCAGATAAGGGGGTTGTAGGCGTTGCTGAACGCCACCGAATAGCCTTCGGGTGCTGTTTGTTTCCCCCCTTGCTAACCTCCGGTGACAGCCGGGGAGGCGAGGTGCTAACAGACAGGATGGATACCGGAGAGTACATCTCCACCATGGAGAACATGGACCCGACTTTAGCGGAATTAGGGGACGAATTCACCTTAGGAGACATCGACGAGATGCTGCAGTTTGTCAGCAACCAGGACTTCCCAGACTTGTTTGAAGATCAGATGACCACAGCGGGCTCTGTACAGAGTGGCGGCGCCAGCACCGCTCCCCAACCTGCCGTTCAAACCCCTCAAACTCCCCAAACTCCCAAGACACCAGCCCCTGTCGTCTACCAGAGCCCCACCGTTCTCCTCGCCCCCTCCCAGACACTGTCTCCCCAGTCTCTGCCCCTCACCCCTCCCCTCACTCCTGCACAGACCCCCTCCCCCACGACTGTCCTGCCAGTGCAGCAGCAGGTGACCCGCAGCCCTCCGCTCCTCCAGCCCCGGCCTCAGGTGGTCCAGCCCATCCAGCCTCAGCCCCAACAGACAGCCCAGTCCACCATCCAGCAGGATTTTTTCAGCCGGAATCCTGATATTTCATGGCTGTTCAAACAGATGCACGCCCAGGGGATCCCCATGCAGACCCAGAGCTTCCCGGTCCACACCCTGGTTCAGACCCACAGCCAGGCAGCCCTGCCCATCCAAACCCAGGCGGCCCAAACTGTGATGATTGCCTCCAACGGCGGACAGTCGCGTTTCATCCAGAGCCCTGTCATCTGCCACCAGAGCCACGCTCCTGGCTTCCAAGTCCTCCAACCGCAGATGCAGAGCATTATGACGTCACCACAGCTCCAACCAATGACCATACAGCACCAGCGTGTTCTGACCCCAACCTGTCAGACCATCCAGACTCTCTCAGCGCCCACCACAGTCCACACTATGCAACAACAGATGCAGCAAGTGCCTGTTCTGGTCCAGCAGCCTCAGATTCTGAAGACAGATTCACTGGTTCTTACAACGCTCAAACCAGACGGCACGCAAGTCCTGTCTACCATGCAGAGCCCCGCAGGGATCACCACCTTGACTACGCCCATCCAGAACACAGCTCTGCAAGTCCCGACGCTGATGAGCGGCAACATCCTGACCACCGTCCCTGTTATGATGGGAGGAGGAGACAAGCTGCCAATCAAGCAGCTACAGCCGggctcctctcactgctcaaACGGAGCCAGATCAAGCATGGAGCAAGGCCAGATGATGGGAGGAATGGTAGGCCCGGGGGGAGTGGTGAAGGAGGGCGAGAGGAGGACGACTCACAACATCATTGAGAAGAGGTATCGGTCCTCCATCAACGACAAGATCGTGGAGCTCAGAGACCTCGTCATGGGCAATGACGCCAAGataCACAAGTCAGGAGTGCTGAGGAAGGCCATTGACTACATCAAGTACCTGCAACAGGTCAACCACAAACTACGGCAGGAAAACATGGCCCTTAAGATGGGCAACCAGAAGAACAaGACAGTGATTCTGTCTGAAGACGTGGAGCTTAAAGAGGAAATAGTGATGATGTCACCTCCAGCCTCGGACTCTGGTTCTGGTTCCCCTCAGCAGTTCTCTCCTTACTGTGTGGACTCCGAGCCAGGCAGCCCCTTGATGGATCACGATCAGATGAAGAGTGAGCCAGATTCTCCCTCCTCGGTTGGAGTGATGGATGGTTCTCGACTGCTTCTCTGCGCCCTGACTTTCTTCTGCCTGTCCCTAAACCCTCTGCCATCTTTGTTGGGCTCTGAGGCCTCAGCGAGCCCTGGTCTCGCTGTGGGCCACGGGCCAAGTAGAACGCTCGTCTGGTTCCCAACTCACGCGCAGGACTTTGCATCCTGGCTGCGGTGGCTGTTGCCGTGGGTGATGGTGTGGGTGCTGAGCGGTGTGGGAGCGGTGTGGGGCTGTGTCAGGGTGCTCTACCTGTGGGAGCCTGTCACACCCCTTCACTCGCCAAAATCGGTGTCCTTCTGGAGGCATCGCAAACAAGCCGACCTGCATCTCAAAAGGGGAGATTACACGGCAGCAATGGCCAGTTTAGAAACCTGCCTGTCCGTCTTGACCAGAGCTCTTCCCTCAACCAGTCTGGAACTGGTCTGCTCTCTGTCCTGGAATCTGATTCGCTACGTCTTGCATCGTCCAACTCCTCTGGGTTGGCTGGTTCGTCAGGTTGGGGGAAAGCATGAGGGGGAGGAGGCTAGGACTAGTGCGAAGGACGCTGCGCTGGTTTACCACCGGCTGAGCCAGCTGCATCTCACAGAAAAGCTGCCTCAGCGCAGCAGCCTGTGGGCGTTGTCTGTGTCTCTGAGCGCTGTCAACCTCAGCGAGAGCGCCCGAAGCAAGATGGCCCCTGCCCAGCTCACCCAGATCTACGTCACCGCAGCAACAGCCCTGCGCATTCTGCTAGGCCACCACCTCTCCTGTCTGCCTGGTTATCTGTTGAGTTGTGCAGAGAGCGTGGCCAACCAATCGGAGACCAAGCCGATCCCCGACTGCCTGCGCTGGCTCTTCACCCCATTGGGTAGGCAGTTCTTCCTGAGTTGCGATTGGTCGTTGAAGTCAGAGAGCAGCGATGGGGTGTACACTTCTCAGAGAGACCCAGCTGACCCCATTGCCCAGCTGCACCGCTGTTTCTGCAGGAAGCTTTTGGAGAGAGCCGTTCACACCCTCATCCAGCCACAGAGCGACTCTGAAGCTGGCAAACGCAAGAACGCCTCTGGggAGTTTTCCAGTGCCCTGGAGTTCCTCCAGTTGTTGAACAGCTGTACAGAGGACTCTCCTTCCCCTCCTCCTGCCTTCTCAACTCCTCCCAGTCACACCACCACCCCAGTGGGAGACCCAGTGAGTCGTTGGTGGGCTCTGGTCCTGAAGGCTGCCGTGCATTGGCTGCAGGGCGATGATGTCGCAGTGAGGTCACTGTTGGCAGAGGCAGAGCGGATGCCGAGGGCTCTGCACACTCTTGACCACCCTCTGCCCAAGGCTGTGCTGCATCTTTGCAAGGCAGTTCAGATGAGTCTGTCCCCTCTGAAGGGAGAAGGGGCGGTAGCCTGCCTGTCCCACAGCGACAGAGCCAGCAGCTACCTGCGCTCCAGCATCTCGGTGCCCGTCGCCCAGACTGGGAACTGGCTGAACAAGGGGGTAGAGCTCCTGATCTGTGACCTTCTGCTGACGTTGAGGACCAGTTTATGGCAGCGGGGAGGCAGCAGTAACGGAGAGCCTGGCCCGGCTCCTGGATCCCAGTTGGCTGGTTTCCAGAGGGACCTCAGCGCGCTCAGAAAGCTCACACAGTGCTACAGACAGGCGCAGCACAAGGTGTTTCTCCATGAGACCACAGTGAGGCTGATGGCCGGAGCCAGTCCCACAAGGACACACCAGCTGCTGGAGCACAACCTCCGACGCAGGACACACAACTCTTACACGGCCGAAGGTGAGTGTGTCCTGGGTGAGAGGGAGAGGGCTCATGCCATCCTCCTGGCCTGCCGCCACCTGCCCATGCCCCTGCTAACCCCGCCCGGGCATCGCACTCGCCTGCTGGCCGAGGCCAAGCGCACCCTGGAGCGGGTGGGAGACCGTCGGTCCCTGCAGGACTGTCAGCAGATCCTGCTGCGCCTCAGCGGGGGCACGACCATCGCGGcctcctgaacacacacacacacacacacccacacacacacacacacagattaggGCTACTCAGAATGAACTCTGTAATTTGCTACATACATACAAAGATGTAAACCAGTCTACTCACCCACAACCTCAAACCACAATTTGATCAAGGGCCATGATTATAAAGACTTTTCTTCAAACTGCTACACttttctcatacacacacagctgatttaGTTTACTGTCACCGTTCCCACACCTGCAGCTGAAACACTTCAGGCCTCACACTTGCTTCTTTCGATGCTTAGTTTCATTGTTGCAGCACAATCATTCCACCTTCTGGTCATTAATGGTACCGTGCTAGGCTCGCTGCCTCATGTTTAACAATGCTACACAATGAGCAAAATCAGGTTCAACAGGGCCCAAAGGGAAAAGGGACCATTCTCTAATAGCTGTTTTAAATGAACGCAATGCAGCAGAGCATTGCTTAGCTGTAGGATACCGAGCTGTACAATCATTATTGGCACACGGCAATGTGAGTCCCACGTAACTGCGTGATGTCTCATTAAATTTGCAAGCTTCAATTTAAAGGGGCGTCAGAGAGTGTAGGATGCAGACTAGATAGACTAGCTCGCTTATAACCATTCAGTGCTGAGTAGTGTCCCTTCTTATCTACCTCATACACAGTACAATGCCAGCACTGTACTGTGGAGCAAAGTAGGATACTTAAGCACCCCGTCAGTTATCCTGAATTTGAATTAACTGACCATTTGATGCTTCAGTCCAACGCAGCGTCATTCTAATAAAACCTTCCTGAGCTGCATTACTTAGACTTTAGGGGGCATCCCTAAAGCACTCTAGGGATTTGACTTGCTGTCGCAGAAATGACCGCTACAGCTGAGAAGATTATTTGATTTGCGGAATACCTAAATAACCGAGGGAAGCAGCCAGTAATGGGCCGATAAGTTTGAAAATGCCTACctacaaacacactcacacagacccatatacatatttaattaattaGATACAAACTCACAATGTGATTGTATATAGGTTGTACATAGACAGATGAAGAGAAGTAGATTAAACAGGAAGTCCTCACTTGTGCTTGAGAGGAGACGTGCATCAAAGAAAGCGCGGTAACGTGTCAAAGTTGGCTCGTGATGGTTTCCTGTCAAGAGTCCGGATCTGACGCTCGGACCAGGAGGGCGAGGTCAGTCGCCTCACCCCGGGAGTGCGTGTTACTCCATCCAAAAGATCTTTTTATTATCAAACGCTCACTGGCGTGGCTTTGCAAGGTGGCTtccagggctgcaactaaccattatttccattatcgattaatcgattagttgtttggtctataaaatgtcttgttttgtccacagctCAAATATTCGgtttactgtcatagaggagtgaaga
>XM_039825224.1
GTGAATGACGTAATGAGCGTAAAACAAGATGGCGGCGACTTAAGCATCTATCGGTTTGAACTAGTTTATCGCCACAGAGGTCTGCCTCTCTTGAGGCTTTATAGTGTTCTCTCACGGTTGGTCCGGGAAAGAACAACCTTTTCGGTCAGATAAGGGGGTTGTAGGCGTTGCTGAACGCCACCGAATAGCCTTCGGGTGCTGTTTGTTTCCCCCCTTGCTAACCTCCGGTGACAGCCGGGGAGGCGAGGTGCTAACAGACAGGATGGATACCGGAGAGTACATCTCCACCATGGAGAACATGGACCCGACTTTAGCGGAATTAGGGGACGAATTCACCTTAGGAGACATCGACGAGATGCTGCAGTTTGTCAGCAACCAGGACTTCCCAGACTTGTTTGAAGATCAGATGACCACAGCGGGCTCTGTACAGAGTGGCGGCGCCAGCACCGCTCCCCAACCTGCCGTTCAAACCCCTCAAACTCCCCAAACTCCCAAGACACCAGCCCCTGTCGTCTACCAGAGCCCCACCGTTCTCCTCGCCCCCTCCCAGACACTGTCTCCCCAGTCTCTGCCCCTCACCCCTCCCCTCACTCCTGCACAGACCCCCTCCCCCACGACTGTCCTGCCAGTGCAGCAGCAGGTGACCCGCAGCCCTCCGCTCCTCCAGCCCCGGCCTCAGGTGGTCCAGCCCATCCAGCCTCAGCCCCAACAGACAGCCCAGTCCACCATCCAGATGCACGCCCAGGGGATCCCCATGCAGACCCAGAGCTTCCCGGTCCACACCCTGGTTCAGACCCACAGCCAGGCAGCCCTGCCCATCCAAACCCAGGCGGCCCAAACTGTGATGATTGCCTCCAACGGCGGACAGTCGCGTTTCATCCAGAGCCCTGTCATCTGCCACCAGAGCCACGCTCCTGGCTTCCAAGTCCTCCAACCGCAGATGCAGAGCATTATGACGTCACCACAGCTCCAACCAATGACCATACAGCACCAGCGTGTTCTGACCCCAACCTGTCAGACCATCCAGACTCTCTCAGCGCCCACCACAGTCCACACTATGCAACAACAGATGCAGCAAGTGCCTGTTCTGGTCCAGCAGCCTCAGATTCTGAAGACAGATTCACTGGTTCTTACAACGCTCAAACCAGACGGCACGCAAGTCCTGTCTACCATGCAGAGCCCCGCAGGGATCACCACCTTGACTACGCCCATCCAGAACACAGCTCTGCAAGTCCCGACGCTGATGAGCGGCAACATCCTGACCACCGTCCCTGTTATGATGGGAGGAGGAGACAAGCTGCCAATCAAGCAGCTACAGCCGggctcctctcactgctcaaACGGAGCCAGATCAAGCATGGAGCAAGGCCAGATGATGGGAGGAATGGTAGGCCCGGGGGGAGTGGTGAAGGAGGGCGAGAGGAGGACGACTCACAACATCATTGAGAAGAGGTATCGGTCCTCCATCAACGACAAGATCGTGGAGCTCAGAGACCTCGTCATGGGCAATGACGCCAAGataCACAAGTCAGGAGTGCTGAGGAAGGCCATTGACTACATCAAGTACCTGCAACAGGTCAACCACAAACTACGGCAGGAAAACATGGCCCTTAAGATGGGCAACCAGAAGAACAaGACAGTGATTCTGTCTGAAGACGTGGAGCTTAAAGAGGAAATAGTGATGATGTCACCTCCAGCCTCGGACTCTGGTTCTGGTTCCCCTCAGCAGTTCTCTCCTTACTGTGTGGACTCCGAGCCAGGCAGCCCCTTGATGGATCACGATCAGATGAAGAGTGAGCCAGATTCTCCCTCCTCGGTTGGAGTGATGGATGGTTCTCGACTGCTTCTCTGCGCCCTGACTTTCTTCTGCCTGTCCCTAAACCCTCTGCCATCTTTGTTGGGCTCTGAGGCCTCAGCGAGCCCTGGTCTCGCTGTGGGCCACGGGCCAAGTAGAACGCTCGTCTGGTTCCCAACTCACGCGCAGGACTTTGCATCCTGGCTGCGGTGGCTGTTGCCGTGGGTGATGGTGTGGGTGCTGAGCGGTGTGGGAGCGGTGTGGGGCTGTGTCAGGGTGCTCTACCTGTGGGAGCCTGTCACACCCCTTCACTCGCCAAAATCGGTGTCCTTCTGGAGGCATCGCAAACAAGCCGACCTGCATCTCAAAAGGGGAGATTACACGGCAGCAATGGCCAGTTTAGAAACCTGCCTGTCCGTCTTGACCAGAGCTCTTCCCTCAACCAGTCTGGAACTGGTCTGCTCTCTGTCCTGGAATCTGATTCGCTACGTCTTGCATCGTCCAACTCCTCTGGGTTGGCTGGTTCGTCAGGTTGGGGGAAAGCATGAGGGGGAGGAGGCTAGGACTAGTGCGAAGGACGCTGCGCTGGTTTACCACCGGCTGAGCCAGCTGCATCTCACAGAAAAGCTGCCTCAGCGCAGCAGCCTGTGGGCGTTGTCTGTGTCTCTGAGCGCTGTCAACCTCAGCGAGAGCGCCCGAAGCAAGATGGCCCCTGCCCAGCTCACCCAGATCTACGTCACCGCAGCAACAGCCCTGCGCATTCTGCTAGGCCACCACCTCTCCTGTCTGCCTGGTTATCTGTTGAGTTGTGCAGAGAGCGTGGCCAACCAATCGGAGACCAAGCCGATCCCCGACTGCCTGCGCTGGCTCTTCACCCCATTGGGTAGGCAGTTCTTCCTGAGTTGCGATTGGTCGTTGAAGTCAGAGAGCAGCGATGGGGTGTACACTTCTCAGAGAGACCCAGCTGACCCCATTGCCCAGCTGCACCGCTGTTTCTGCAGGAAGCTTTTGGAGAGAGCCGTTCACACCCTCATCCAGCCACAGAGCGACTCTGAAGCTGGCAAACGCAAGAACGCCTCTGGggAGTTTTCCAGTGCCCTGGAGTTCCTCCAGTTGTTGAACAGCTGTACAGAGGACTCTCCTTCCCCTCCTCCTGCCTTCTCAACTCCTCCCAGTCACACCACCACCCCAGTGGGAGACCCAGTGAGTCGTTGGTGGGCTCTGGTCCTGAAGGCTGCCGTGCATTGGCTGCAGGGCGATGATGTCGCAGTGAGGTCACTGTTGGCAGAGGCAGAGCGGATGCCGAGGGCTCTGCACACTCTTGACCACCCTCTGCCCAAGGCTGTGCTGCATCTTTGCAAGGCAGTTCAGATGAGTCTGTCCCCTCTGAAGGGAGAAGGGGCGGTAGCCTGCCTGTCCCACAGCGACAGAGCCAGCAGCTACCTGCGCTCCAGCATCTCGGTGCCCGTCGCCCAGACTGGGAACTGGCTGAACAAGGGGGTAGAGCTCCTGATCTGTGACCTTCTGCTGACGTTGAGGACCAGTTTATGGCAGCGGGGAGGCAGCAGTAACGGAGAGCCTGGCCCGGCTCCTGGATCCCAGTTGGCTGGTTTCCAGAGGGACCTCAGCGCGCTCAGAAAGCTCACACAGTGCTACAGACAGGCGCAGCACAAGGTGTTTCTCCATGAGACCACAGTGAGGCTGATGGCCGGAGCCAGTCCCACAAGGACACACCAGCTGCTGGAGCACAACCTCCGACGCAGGACACACAACTCTTACACGGCCGAAGGTGAGTGTGTCCTGGGTGAGAGGGAGAGGGCTCATGCCATCCTCCTGGCCTGCCGCCACCTGCCCATGCCCCTGCTAACCCCGCCCGGGCATCGCACTCGCCTGCTGGCCGAGGCCAAGCGCACCCTGGAGCGGGTGGGAGACCGTCGGTCCCTGCAGGACTGTCAGCAGATCCTGCTGCGCCTCAGCGGGGGCACGACCATCGCGGcctcctga

Function

symbol description
srebf2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in regulation of Notch signaling pathway. Acts upstream of or within liver development. Predicted to be located in ER to Golgi transport vesicle membrane; Golgi membrane; and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Is expressed in liver and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in carotid artery disease; prostate cancer; type 1 diabetes mellitus; type 2 diabetes mellitus; and vascular dementia. Orthologous to human SREBF2 (sterol regulatory element binding transcription factor 2).

NR:

description
sterol regulatory element-binding protein 2-like isoform X3

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09107 SREBP2, SREBF2; sterol regulatory element-binding transcription factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825223.1 True 5243 mRNA 0.55 21 4871597 4897912
XM_039825224.1 False 3799 mRNA 0.59 20 4872992 4897911

Neighbor

gene id symbol gene type direction distance location
nol12 NA coding downstream 5015 4861415 ~ 4866582 (-)
LOC120574312 NA coding downstream 11508 4855277 ~ 4860089 (-)
triobpb triobp coding downstream 15997 4831333 ~ 4855600 (-)
ndufa6 ndufa6 coding downstream 42665 4824252 ~ 4828932 (-)
poldip3 poldip3,LOC102796373 coding downstream 67854 4795719 ~ 4803743 (-)
LOC120574180 LOC103371177,LOC102309677,LOC102203270,LOC101480034 coding upstream 1714 4899626 ~ 4903295 (-)
LOC120574181 ccdc134 coding upstream 6201 4904113 ~ 4913556 (-)
LOC120574178 NA coding upstream 16170 4914082 ~ 4972215 (-)
kdelr3 kdelr3 coding upstream 102414 5000326 ~ 5004464 (-)
polr2f polr2f,LOC107727050 coding upstream 160256 5058168 ~ 5062273 (-)
G151799 NA non-coding downstream 287437 4583204 ~ 4584160 (-)
G151790 NA non-coding downstream 348023 4518781 ~ 4523574 (-)
G151785 NA non-coding downstream 392718 4477384 ~ 4478879 (-)
G151783 NA non-coding downstream 458437 4411516 ~ 4413160 (-)
LOC120574176 NA non-coding downstream 534373 4334272 ~ 4337224 (-)
G151951 NA non-coding upstream 115605 5013517 ~ 5024092 (-)
G152052 NA non-coding upstream 272392 5170304 ~ 5170652 (-)
G152081 NA non-coding upstream 389946 5287858 ~ 5290361 (-)
G152104 tob2 non-coding upstream 492593 5390505 ~ 5395115 (-)
G152107 NA non-coding upstream 548591 5446503 ~ 5448057 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other downstream 106104 4585173 ~ 4765493 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other downstream 406606 4416177 ~ 4464991 (-)
LOC120575464 NA other downstream 504254 4361848 ~ 4367343 (-)
G151344 smarca4 other downstream 1554682 3311727 ~ 3316915 (-)
G151227 LOC103393680 other downstream 1956230 2911326 ~ 2915367 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other upstream 280404 5178316 ~ 5227241 (-)
G152114 rbx1 other upstream 563934 5461846 ~ 5464418 (-)
top3a top3a,LOC102783137 other upstream 651379 5549291 ~ 5567539 (-)
atp5mf atp5j2,LOC102786280 other upstream 676768 5574680 ~ 5613722 (-)
bud31 bud31,LOC106595689 other upstream 682351 5580263 ~ 5582864 (-)

Expression


Co-expression Network