luc7l3 (luc7l3,LOC102798435)


Basic Information

Item Value
gene id luc7l3
gene name luc7l3,LOC102798435
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10608998 ~ 10618057 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825336.1
agagaactacTGCCGGACTGGTTGAACGGTTGAACCATAAACGGGCGGCGTTGTTACACCGTCTGCCATTTTGAGTACAAGTATCTTGCGCGCAATAGATGGTGTCAACTGGCTCTTCAGGATATATAGTAGTTCTTTAAATCAAGGCTACAATCTTGTAGGCAAAATGCTCTCAGCAGCCCAGTTACTCGATGAGTTGATGGGCCGAGATAGAAATTTAGCCCCTGATGAGAAGCGATGCAACGTGCGATGGGACGACGAAAGCAAGGTCTGTCGGTACTATCTGTGTGGCTTCTGcccagctgagctattcacaaaCACCCGCTCTGACTTGGGCCCTTGTGAGAAGATCCATGATGAAAATCTCAGAATAACGTATGAGAAAAGCTCTCGGTTCATGAAGGAGGGCTATGAGCGGGACTTCCTGCGCTATTTGCAGTCACTCCTGGCAGAGGTGGAACGGCGGATTCGTAGAGGGCATGCCCGACTTGCACTTTCCCAGGCTCAGCAGAATGCAGGGGGTCCTGGTCCGTCAGGAAAGAATGAGGAGAAGGTCCAGGTTCTAACCGAGAAGATTGAAGACCTAGTTTTACAGATTGAGGAGCTGGGGTCAGAGGGCAGAGTGGAGGAGGCCCAGGGAATGATGAAGCTGGTGGAGCAGctgaaggaggagagggagcTGCTGAGCTCCACCCCCTCGaccATCGAGAGCTTTGCGGCCCAGGAGAAACAGATGGaggtgtgtgaggtgtgtgggGCCTTCCTCATTGTGGGTGACGCACAGTCCCGAGTGGACGACCACTTGATGGGCAAGCAACACATGGGCTACGCCAAGATTAAATCCACTGTGGAGGAGCTCAAGGAGAAACTACGTCGTCGCTCAGAGGACCCTCAAGGTGAAAGCCCTGCGCTTAAGAAGGACCGAGAAGACCGTGAGCGTGAGAGGGAGGAAAGGGAGAAAAAGCgcaaagaggaggaagagaaggagaaggagagggagaaggagcgTGAAAAGGAGAGGGAACGAGAGAGGGAGCGGGAGCGCGAGAAGGAGAGAGACCGAGAACGGgatagagatagagacagagatcgagacagagacagggagcGGGACCGGAGGGCACGCCGAAGCAACTCCACCAGTCGCCACTCCAGTCGAGCATCGGacaggaagaggagcagatCCCGAGATCGCCGGAGGTCCAGGAGCAGAGACAAGGAAAGGGAGAGGGAACGCAAACGCAGCAGGAGCCGGGACAGGGACAGGGACAGGGAGAGGAAGCGCAGCCGTGAGCGCTCTGACAGAAAGCGTCGCTCCCGCAGTCGTGACAAGAGGAGGTCGCGCAGCTCAGAGCGCAAATCTCACCGCCATCGCAGCCGCAGCAAGGACAGggacagagaggagaagagagacaaGGACAGAGAGCGGTCATCGAAAGACAAAGACCGTAAGGTAACGGAGGAGAGGAGCAGCTCTAAGAAAGACAAACACTCTGACGGCGATGCAGCTGCCATCAAGGCTTCGTCAGAAGCGGAACCGATGGAGACAGAGGCGGCTGCCTCTGCCTCCCCTCTGCTTAACGGCCAGCAAGAGCTCCTCCATTCTGAAGGTGACACTCAGTCCAATTAAAACTGATCTGATAGGACCTCAGATCAGACTCAGGGGAAGCTGGGATATCTGGTGGAGGAAGAAGTGGAAGAGCGCACCCATCCTTTACCTGAACCTGACACGTCGCTGCTTAAAAACAAGGTGAACCACAAGTGTGTAGTGGCTTATTTAAAAACATGAACCTAACGTGTGTAAATGaggggagagggaaaaaaataaaattacattgaTTTCATGTTCCGTCACCTGTCTCTTTTGGCTGGATGAGGGTAGTTTGTGGTTCATCTGATGTATTTCTTGGTCTAGATGTGGGTCAGGCATCACTTTGAATACCAAACTTAAGAGAAGTTAATTATGGggttttatttagaaaatcttTACACATCCTTGTTTCTTGGCatttagtaaaaaataaaatgcaaaaaaaaaa
>XM_039825337.1
aagagaactacTGCCGGACTGGTTGAACGGTTGAACCATAAACGGGCGGCGTTGTTACACCGTCTGCCATTTTGAGTACAAGTATCTTGCGCGCAATAGATGGTGTCAACTGGCTCTTCAGGATATATAGTAGTTCTTTAAATCAAGGCTACAATCTTGTAGGCAAAATGCTCTCAGCAGCCCAGTTACTCGATGAGTTGATGGGCCGAGATAGAAATTTAGCCCCTGATGAGAAGCGATGCAACGTGCGATGGGACGACGAAAGCGTCTGTCGGTACTATCTGTGTGGCTTCTGcccagctgagctattcacaaaCACCCGCTCTGACTTGGGCCCTTGTGAGAAGATCCATGATGAAAATCTCAGAATAACGTATGAGAAAAGCTCTCGGTTCATGAAGGAGGGCTATGAGCGGGACTTCCTGCGCTATTTGCAGTCACTCCTGGCAGAGGTGGAACGGCGGATTCGTAGAGGGCATGCCCGACTTGCACTTTCCCAGGCTCAGCAGAATGCAGGGGGTCCTGGTCCGTCAGGAAAGAATGAGGAGAAGGTCCAGGTTCTAACCGAGAAGATTGAAGACCTAGTTTTACAGATTGAGGAGCTGGGGTCAGAGGGCAGAGTGGAGGAGGCCCAGGGAATGATGAAGCTGGTGGAGCAGctgaaggaggagagggagcTGCTGAGCTCCACCCCCTCGaccATCGAGAGCTTTGCGGCCCAGGAGAAACAGATGGaggtgtgtgaggtgtgtgggGCCTTCCTCATTGTGGGTGACGCACAGTCCCGAGTGGACGACCACTTGATGGGCAAGCAACACATGGGCTACGCCAAGATTAAATCCACTGTGGAGGAGCTCAAGGAGAAACTACGTCGTCGCTCAGAGGACCCTCAAGGTGAAAGCCCTGCGCTTAAGAAGGACCGAGAAGACCGTGAGCGTGAGAGGGAGGAAAGGGAGAAAAAGCgcaaagaggaggaagagaaggagaaggagagggagaaggagcgTGAAAAGGAGAGGGAACGAGAGAGGGAGCGGGAGCGCGAGAAGGAGAGAGACCGAGAACGGgatagagatagagacagagatcgagacagagacagggagcGGGACCGGAGGGCACGCCGAAGCAACTCCACCAGTCGCCACTCCAGTCGAGCATCGGacaggaagaggagcagatCCCGAGATCGCCGGAGGTCCAGGAGCAGAGACAAGGAAAGGGAGAGGGAACGCAAACGCAGCAGGAGCCGGGACAGGGACAGGGACAGGGAGAGGAAGCGCAGCCGTGAGCGCTCTGACAGAAAGCGTCGCTCCCGCAGTCGTGACAAGAGGAGGTCGCGCAGCTCAGAGCGCAAATCTCACCGCCATCGCAGCCGCAGCAAGGACAGggacagagaggagaagagagacaaGGACAGAGAGCGGTCATCGAAAGACAAAGACCGTAAGGTAACGGAGGAGAGGAGCAGCTCTAAGAAAGACAAACACTCTGACGGCGATGCAGCTGCCATCAAGGCTTCGTCAGAAGCGGAACCGATGGAGACAGAGGCGGCTGCCTCTGCCTCCCCTCTGCTTAACGGCCAGCAAGAGCTCCTCCATTCTGAAGGTGACACTCAGTCCAATTAAAACTGATCTGATAGGACCTCAGATCAGACTCAGGGGAAGCTGGGATATCTGGTGGAGGAAGAAGTGGAAGAGCGCACCCATCCTTTACCTGAACCTGACACGTCGCTGCTTAAAAACAAGGTGAACCACAAGTGTGTAGTGGCTTATTTAAAAACATGAACCTAACGTGTGTAAATGaggggagagggaaaaaaataaaattacattgaTTTCATGTTCCGTCACCTGTCTCTTTTGGCTGGATGAGGGTAGTTTGTGGTTCATCTGATGTATTTCTTGGTCTAGATGTGGGTCAGGCATCACTTTGAATACCAAACTTAAGAGAAGTTAATTATGGggttttatttagaaaatcttTACACATCCTTGTTTCTTGGCatttagtaaaaaataaaatgcaaaaaaaaaa

Function

symbol description
luc7l3 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection. Predicted to be part of U1 snRNP and U2-type prespliceosome. Orthologous to human LUC7L3 (LUC7 like 3 pre-mRNA splicing factor).

NR:

description
PREDICTED: luc7-like protein 3 isoform X2

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0005685 U1 snRNP cellular_component
GO:0003729 mRNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825336.1 True 2039 mRNA 0.52 11 10608998 10618056
XM_039825337.1 False 2037 mRNA 0.52 11 10608998 10618057

Neighbor

gene id symbol gene type direction distance location
gtf2f1 gtf2f1 coding downstream 432987 10166712 ~ 10176011 (-)
cacna1aa NA coding downstream 459516 10061286 ~ 10149482 (-)
LOC120574373 NA coding downstream 1172132 9435292 ~ 9436866 (-)
LOC120574659 NA coding downstream 1183952 9424509 ~ 9425046 (-)
LOC120574660 NA coding downstream 1188300 9420152 ~ 9420698 (-)
LOC120574864 tob1 coding upstream 55285 10673342 ~ 10677290 (-)
spag9a NA coding upstream 120851 10738908 ~ 10772253 (-)
LOC120574453 NA coding upstream 190250 10808307 ~ 10811425 (-)
LOC120574454 LOC106520401,LOC108239207,LOC102796162 coding upstream 194796 10812853 ~ 10820285 (-)
dhps dhps,LOC102794989 coding upstream 313741 10931798 ~ 10941167 (-)
G153734 NA non-coding downstream 13991 10594743 ~ 10595007 (-)
G153671 NA non-coding downstream 314832 10286635 ~ 10294166 (-)
G153663 NA non-coding downstream 439559 10163444 ~ 10169439 (-)
G153631 NA non-coding downstream 570213 10034440 ~ 10038785 (-)
G153630 NA non-coding downstream 581299 10025317 ~ 10027699 (-)
G153937 NA non-coding upstream 287298 10905355 ~ 10907608 (-)
G153950 NA non-coding upstream 332514 10950571 ~ 10959521 (-)
G153943 LOC104934589,LOC102791985 non-coding upstream 415149 11033206 ~ 11035516 (-)
G153987 NA non-coding upstream 450986 11069043 ~ 11073776 (-)
G154036 NA non-coding upstream 653762 11271819 ~ 11272848 (-)
gtpbp1 gtpbp1,LOC104924447,LOC102799794 other downstream 218822 10352158 ~ 10390176 (-)
LOC120574648 NA other downstream 786005 9822145 ~ 9822993 (-)
LOC120574583 NA other downstream 872164 9735626 ~ 9736834 (-)
LOC120574609 NA other downstream 875803 9732686 ~ 9733195 (-)
LOC120574633 LOC102776372 other downstream 877758 9730610 ~ 9731240 (-)
LOC120574455 NA other upstream 166055 10784112 ~ 10791565 (-)
LOC120574486 NA other upstream 460488 11078545 ~ 11080607 (-)
tnrc6c1 LOC103361861 other upstream 480259 11098316 ~ 11137528 (-)
G154033 NA other upstream 585393 11203450 ~ 11225546 (-)
LOC120574419 NA other upstream 1467928 12085985 ~ 12090981 (-)

Expression


Co-expression Network