LOC120574864 (tob1)


Basic Information

Item Value
gene id LOC120574864
gene name tob1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10673342 ~ 10677290 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825340.1
GCTGTATCAGGAGGGTGGACGAAGTAGCAAAACTCCCGGAGAGGCGGGAGCTACTCTGCAAGCCTGCtgaaagaggaaaaacaaaaaaactctaaataatcttaaaaagagAAACCGAAGCAAACGCCAATCCTCCGAAATGTACATGTACTGGAATACTTTTTTGTAACGTTGATAATATATTCTATGTGAAGAaagtatttatactttttttttctatttgcacTAACTTACGGTACTTCAGAActactgagactttttttttttttttacaaaaaaGATAAAATTATCACAGCCTGTGGAAAGACATCACTTCTACAAAACCAGCACTTTTTATCCAATTACTGGTTGCTTTCGCCATCCTGCCTGGAGAGCATCTGTGTTACCAACCACGGATAAACAAAGCAGACCCAGTGGACACATTCAAGGTCAGACACACCTAATCTTCACGCACCTGGTAAACATCGGCAGTTAGCTATGCAGCTTGAAATCCAAGTAGCTCTCAACTTCATCATCTCGTACCTGTATAACAAGCTGCCAAGGCGGCGGGTTAACATTTTCGGCGAGGAGCTGGAGCGGCAGCTGAAGCAGAAATATGAGGGACACTGGTACCCGGACAAGCCATACAAGGGCTCAGGATTCAGATGTATCCACGTGGGGGAGAAGGTGGACCCTGTGGTGGAGAAGGCAGCCAAAGAGAGCGGGCTGGACATTGAGGATGTCCGCAACAACCTTCCCCAGGACCTCAGCGTGTGGATTGACCCCTTTGAGGTGTCCTATCAGATCGGGGAGAAAGGGCCCGTcaaagtattgtatgtcgaTGACAGCAATGAAAGCGGAGCTAGTGGTGGAGGGCTGGATCTGGACAAGGAGATCAAGAACAGTTTCAATCCTGACGCACAGGTCTTCATGCCCATCAATGAGCCTGTGAACGGCGCCTCTCCGGGCTCCACCTCACCCTCTCCTCCTTTCGGCCACTCGGCAGCGGTCAGCCCCACCTTTATGCCCCGCTCCACGCAGCCTTTAACCTTCACAACAGCCACCTTCGCCGCCACCAAGTTTGGCTCCACTAAAATGAAGAGCAGTGGACGCAACAACAATGGCGGAAGTACTGCTGGGAACAAGGCGGCGCGTACCTCTCCCACCAACCTGGGCCTGAATGTGAACAGTCTCCTGAAACAGAAAGCCATCTCCACCTCCATGCACTCTCTGTACGGGTTGGGGCTCGgagtacagcagcagcagcagcagcagcagcaccagaaGCCCTCAGCCCTGTCCCCCAATGCCAAGGAGTTTGTGTTCCCCAGCCTTCAGGGCCAGGGCAGCCAGAGTGCTCTCTTCCCTGGGGACAGCTCGCTCAGCCTCAGCCCGCTGCAGTACAGCAATGCCTTCGACATGTTTGCGGCCTATGGTGGCCTTAACGACAAGTCCCTTATGGATGGCTTGAATTTCAGCTTGAACAACATGCAGTATTCTAACCAGCAATTCCAGCCAGTTATGGCCAACTAGTACACATAAAGGTACTACTTAAGCTACTACTTCTCACAGAAATGACCAGAGATAATGTGATAGGggggaaacaaacacaaatgcacattttgaaaaagagggaaaaaaaaaaaaaaaagcgtaaACGAGAAAAGAATGTCATGGATAAAAGGAGAAAGTGACATGTCAGCTGTAAGATCTATGTTACGAGTCTAAGAGCATGAGCCCGAGGGTGAATTCCTTTGCCCCATTGAGTTATACCTTTAGTACAAGATGTCCAAGCTTGGTTACCTAAACTTCTACATGCATCATTGTCATTTCTTTTGCCAACCAagcacaaattattttttttatgtgactgttttaagatataaaaaaaagacaaaaaaaaataaaataccacCACAAGTCATGGCCTCTTTCAGTATTTAAGCATAACTGGACACCGCCAATTTTTTTCAAGGAATTGGCCTAAATAAGTGGGATTTCCTGGTCTTTTTTCTAATTGTATAATTTAATTTGGAACAGAGTTTGTAAAATATCAGAGTATCTATTGTTTCTACTACATGGTATTGCATTTATATCTTTTTACTACTCCAGTGATCTGTGATGGCTGCAGcaactttgttttctttttttattgaaattataaaatgaatccatctttaaaaaaaaaaaaaaaaaaaaacattgactaTTCTAAAGATTGTGTACAGAATATTCCGTAGTGGTGGGATTTAAGaatatttgcttttttgaaAAACATAAGAGTTGTATTTTCTGTTAAGAGTTTAAAGATTTTTGCTATATTATGGACAAAATGTAATCGTATATTAATTTTGTACCTACATTGTGCAATACTTGATAAAACAAACGGTATAACAAAGTATTTGGAGTCAGTGTCTTACATGTTAAGAGGGACTGATAGTTTATTAAGTTTGTATTAAAAAGCTTGAAAATAA

Function

symbol description
tob1 Enables receptor tyrosine kinase binding activity. Involved in negative regulation of cell population proliferation; negative regulation of translation; and regulation of mRNA catabolic process. Part of CCR4-NOT complex.

NR:

description
PREDICTED: protein Tob1

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14443 TOB; protein Tob/BTG

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825340.1 True 2453 mRNA 0.43 2 10673342 10677290

Neighbor

gene id symbol gene type direction distance location
luc7l3 luc7l3,LOC102798435 coding downstream 55285 10608998 ~ 10618057 (-)
gtf2f1 gtf2f1 coding downstream 497331 10166712 ~ 10176011 (-)
cacna1aa NA coding downstream 523860 10061286 ~ 10149482 (-)
LOC120574373 NA coding downstream 1236476 9435292 ~ 9436866 (-)
LOC120574659 NA coding downstream 1248296 9424509 ~ 9425046 (-)
spag9a NA coding upstream 61618 10738908 ~ 10772253 (-)
LOC120574453 NA coding upstream 131017 10808307 ~ 10811425 (-)
LOC120574454 LOC106520401,LOC108239207,LOC102796162 coding upstream 135563 10812853 ~ 10820285 (-)
dhps dhps,LOC102794989 coding upstream 254508 10931798 ~ 10941167 (-)
fbxw9 NA coding upstream 265522 10942812 ~ 10947670 (-)
G153734 NA non-coding downstream 78335 10594743 ~ 10595007 (-)
G153671 NA non-coding downstream 379176 10286635 ~ 10294166 (-)
G153663 NA non-coding downstream 503903 10163444 ~ 10169439 (-)
G153631 NA non-coding downstream 634557 10034440 ~ 10038785 (-)
G153630 NA non-coding downstream 645643 10025317 ~ 10027699 (-)
G153937 NA non-coding upstream 228065 10905355 ~ 10907608 (-)
G153950 NA non-coding upstream 273281 10950571 ~ 10959521 (-)
G153943 LOC104934589,LOC102791985 non-coding upstream 355916 11033206 ~ 11035516 (-)
G153987 NA non-coding upstream 391753 11069043 ~ 11073776 (-)
G154036 NA non-coding upstream 594529 11271819 ~ 11272848 (-)
gtpbp1 gtpbp1,LOC104924447,LOC102799794 other downstream 283166 10352158 ~ 10390176 (-)
LOC120574648 NA other downstream 850349 9822145 ~ 9822993 (-)
LOC120574583 NA other downstream 936508 9735626 ~ 9736834 (-)
LOC120574609 NA other downstream 940147 9732686 ~ 9733195 (-)
LOC120574633 LOC102776372 other downstream 942102 9730610 ~ 9731240 (-)
LOC120574455 NA other upstream 106822 10784112 ~ 10791565 (-)
LOC120574486 NA other upstream 401255 11078545 ~ 11080607 (-)
tnrc6c1 LOC103361861 other upstream 421026 11098316 ~ 11137528 (-)
G154033 NA other upstream 526160 11203450 ~ 11225546 (-)
LOC120574419 NA other upstream 1408695 12085985 ~ 12090981 (-)

Expression


Co-expression Network