LOC120574866 (acsf2,LOC102294907)


Basic Information

Item Value
gene id LOC120574866
gene name acsf2,LOC102294907
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15404920 ~ 15415610 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825348.1
TTCCTGATGCCTCATGTTTGTGCAGCTCTAGTTTTTTGAATGCAGGCATTAAAAATCTTTTGATGTTCACACCACTAACTGTATGCAGCAGGATAATGAATGGAATCCGACTTATGTAAACATAGGCAGGTATAGAACCAACTAATTTGTTGTTAAGACCCAGTATCTTCTAACAGTTGAAAGAGATTGCGCGATATTCAAGACCAATGTCAGCACTGCTTCGGTCTTCCTGTGCTCACAGTCTCAGATCTGTGGATGGACTTAAACACAGCAAGGCTTGGAAATTATGCAACACAAGTTTGCTCCGGTGGGGTCGGTCCCTCCATGTAGACAGTCCTCCTCGCAAACCCTCACTGACCAGCAGCTATGTCCATGGCACCTCCTCCATGTCTCTGCTCCCCCTGACTGTAGGTCAGAGTCTGGACTCCATAGTCCAGCGCTGGCCTGACCGTGAAGCTGTGGTCTTCCTGCAGGACGGCATCCGGAAAACCTTTGTGCAGTTTCAGCAAGATGTTGACAAGGCAGCTGCAGGTCTGCTTGCTTTGGGCCTGAAGCGAGGCGACAGGCTGGGAGTTTGGGGACCCAACATGTATGAGTGGATCCTTTTCCAGTTTGCTTCAGCCAAAGCAGGAATTATACTGGTGTCATTGAACACGGCCTATCAGGTGAAGGAAGTGGAGTTTACTCTAAAAAAGGTCCAGTGTAAAGCTGTGGTCTGCCCTACACGCTTTAAAACCCAAAACTTCTGTGAGATGCTGAGGGAGCTCTGCCCAGAGCTCGACAGGACGCCAGTAGGCATGATCAAAAGCTCCAGGTTGCCAGACTTGCGTATGGTGATAGTGACAGATAGCAGACAGCCAGGGATGCTCCACGTAGAGGATGTGATGCAAGCAGGGGAGAGTCAGCACCACAAAGAGCTGATGATGGATCTGCAGAGCAAACTGTCCTTCGATGAGCCCATCAACATTCAGTTCACATCAGGGACGACAGGAAGTCCAAAGGGAGCCAGTCTTTCCCACCACAATATTGTAAACAATGCTTACTTTATTGGTCTCCGAATAGGTTTTGGACGGAGAcctcaggtGCGAGTGTGTATGCCCGTTCCCATGTACCACTGCTTTGGCTCTGTGTTGGGAGGGATGAGTATGGCATTGCATGGTATCACACTGGTCTTCCCTTCCTCTGGCTACAACAGCCGAGCCAACCTGGAGGCCATTCAGAGTGAAAAGTGCAATTTCATCTATGGCACTCCTACAATGTTCACTGACATGCTTAGCCAACAGGATTTACACAAGTATGATTTATCATCAATTGAAGCTGGCATCATGGCAGGTTCACCGTGCCCTCCTGAGATTGTGAGAAAAATGATAACAGACATGAACATGAAAGAGCTAATGATCGCTTATGGATCCACTGAGAACAGCCCCATCACATTTCTGGGATTCCCACAAGACAATGAAGAGCTGAAGATAAATACTGTTGGATGTATCATGAGCCACACTGAGGCTAAAGTGGTGGACCCTACTACTGGGGAGATTGTCCCTCTGGGGGCCTCAGGAGAGCTGATGATCAGAGGCAGCTGTGTGATGCACGGATACTGGGACGATCCTGAGAAAACCAGAGAGGTTATCTCCCAAGACCGCTGGTACAGGACTGGTGACACGGCCAGTCTGAACAGTTTGGGATACTGCCGCATTGAAGGACGCATAAAGGACATGATCATCCGAGGAGGGGAGAACATCTACCCTGCTGAGATAGAGCAATTTCTCTATACACATCCTAAAGTCCAGGAGGTACAGGTGGTTGGAGTGAAGGATGAGAGGCTGGGCGAGCAGGTGTGTGCCTGCATCAGGCTGAGGGAGGGCCAGACCTCCACTGCAGAGGAGATAAGAGCATTCTGCAAAGGCCAGataTCTCACTTCAAGATCCCACACTATGTGATCTTTGTCGACAGCTACCCTCTGACAGTCTCTGGAAAGATCAAGAAGAACATATTAAAGGAGGAAATGGAGAAGATATTAGGTCTTTAGTTTTGTGAACCCTGACGGACTGCGTTTGAGTGCATCAGCTGGGAAAGTCAGAAACTGAGCGGTGCAGAATTAATGCTTTGACCGAGAG
>XM_039825349.1
TTCCTGATGCCTCATGTTTGTGCAGCTCTAGTTTTTTGAATGCAGGCATTAAAAATCTTTTGATGTTCACACCACTAACTGTATGCAGCAGGATAATGAATGGAATCCGACTTATGTAAACATAGGCAGGTATAGAACCAACTAATTTGTTGTTAAGACCCAGTATCTTCTAACAGTTGAAAGAGATTGCGCGATATTCAAGACCAATGTCAGCACTGCTTCGGTCTTCCTGTGCTCACAGTCTCAGATCTGTGGATGGACTTAAACACAGCAAGGCTTGGAAATTATGCAACACAAGTTTGCTCCGGTGGGGTCGGTTGACAAGGCAGCTGCAGGTCTGCTTGCTTTGGGCCTGAAGCGAGGCGACAGGCTGGGAGTTTGGGGACCCAACATGTATGAGTGGATCCTTTTCCAGTTTGCTTCAGCCAAAGCAGGAATTATACTGGTGTCATTGAACACGGCCTATCAGGTGAAGGAAGTGGAGTTTACTCTAAAAAAGGTCCAGTGTAAAGCTGTGGTCTGCCCTACACGCTTTAAAACCCAAAACTTCTGTGAGATGCTGAGGGAGCTCTGCCCAGAGCTCGACAGGACGCCAGTAGGCATGATCAAAAGCTCCAGGTTGCCAGACTTGCGTATGGTGATAGTGACAGATAGCAGACAGCCAGGGATGCTCCACGTAGAGGATGTGATGCAAGCAGGGGAGAGTCAGCACCACAAAGAGCTGATGATGGATCTGCAGAGCAAACTGTCCTTCGATGAGCCCATCAACATTCAGTTCACATCAGGGACGACAGGAAGTCCAAAGGGAGCCAGTCTTTCCCACCACAATATTGTAAACAATGCTTACTTTATTGGTCTCCGAATAGGTTTTGGACGGAGAcctcaggtGCGAGTGTGTATGCCCGTTCCCATGTACCACTGCTTTGGCTCTGTGTTGGGAGGGATGAGTATGGCATTGCATGGTATCACACTGGTCTTCCCTTCCTCTGGCTACAACAGCCGAGCCAACCTGGAGGCCATTCAGAGTGAAAAGTGCAATTTCATCTATGGCACTCCTACAATGTTCACTGACATGCTTAGCCAACAGGATTTACACAAGTATGATTTATCATCAATTGAAGCTGGCATCATGGCAGGTTCACCGTGCCCTCCTGAGATTGTGAGAAAAATGATAACAGACATGAACATGAAAGAGCTAATGATCGCTTATGGATCCACTGAGAACAGCCCCATCACATTTCTGGGATTCCCACAAGACAATGAAGAGCTGAAGATAAATACTGTTGGATGTATCATGAGCCACACTGAGGCTAAAGTGGTGGACCCTACTACTGGGGAGATTGTCCCTCTGGGGGCCTCAGGAGAGCTGATGATCAGAGGCAGCTGTGTGATGCACGGATACTGGGACGATCCTGAGAAAACCAGAGAGGTTATCTCCCAAGACCGCTGGTACAGGACTGGTGACACGGCCAGTCTGAACAGTTTGGGATACTGCCGCATTGAAGGACGCATAAAGGACATGATCATCCGAGGAGGGGAGAACATCTACCCTGCTGAGATAGAGCAATTTCTCTATACACATCCTAAAGTCCAGGAGGTACAGGTGGTTGGAGTGAAGGATGAGAGGCTGGGCGAGCAGGTGTGTGCCTGCATCAGGCTGAGGGAGGGCCAGACCTCCACTGCAGAGGAGATAAGAGCATTCTGCAAAGGCCAGataTCTCACTTCAAGATCCCACACTATGTGATCTTTGTCGACAGCTACCCTCTGACAGTCTCTGGAAAGATCAAGAAGAACATATTAAAGGAGGAAATGGAGAAGATATTAGGTCTTTAGTTTTGTGAACCCTGACGGACTGCGTTTGAGTGCATCAGCTGGGAAAGTCAGAAACTGAGCGGTGCAGAATTAATGCTTTGACCGAGAG

Function

symbol description
acsf2 Predicted to enable medium-chain fatty acid-CoA ligase activity. Predicted to be involved in fatty acid metabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in mitochondrion. Orthologous to human ACSF2 (acyl-CoA synthetase family member 2).

NR:

description
PREDICTED: acyl-CoA synthetase family member 2, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K23617 ACSF2; medium-chain acyl-CoA ligase, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825348.1 True 2118 mRNA 0.49 16 15404920 15415610
XM_039825349.1 False 1922 mRNA 0.48 15 15404920 15415610

Neighbor

gene id symbol gene type direction distance location
LOC120574947 rnf222 coding downstream 11717 15391738 ~ 15393203 (-)
hs3st3b1a LOC104940293,LOC103361242,LOC104959450,LOC101483888,LOC100697618 coding downstream 58360 15334362 ~ 15346560 (-)
LOC120574279 LOC103361235,LOC100701199,LOC102782133,LOC102300456 coding downstream 298295 15101981 ~ 15106625 (-)
baiap2a baiap2,LOC103361233,LOC100696811 coding downstream 304329 15044959 ~ 15100591 (-)
LOC120574429 LOC105009787 coding downstream 404776 14998773 ~ 15000144 (-)
LOC120573906 acsf2,LOC102294907 coding upstream 1435 15417045 ~ 15424203 (-)
tbcd NA coding upstream 60749 15476359 ~ 15505454 (-)
LOC120573957 LOC104960327,LOC108241277,LOC101068065,LOC104918611,LOC102777936 coding upstream 92116 15507726 ~ 15509964 (-)
epn3a epn3 coding upstream 96742 15512352 ~ 15522509 (-)
rsad1 rsad1,LOC102775824 coding upstream 114835 15530445 ~ 15534526 (-)
G155151 NA non-coding downstream 351 15368229 ~ 15404569 (-)
G155126 NA non-coding downstream 91328 15312080 ~ 15313592 (-)
G155106 NA non-coding downstream 242485 15156429 ~ 15162435 (-)
G155047 NA non-coding downstream 419556 14985134 ~ 14985364 (-)
G155039 NA non-coding downstream 441074 14963233 ~ 14963846 (-)
G155232 LOC104918633,LOC103356299,LOC102214648,LOC102291995,LOC101464722,LOC100701808 non-coding upstream 111339 15526949 ~ 15527605 (-)
G155234 LOC106925874,LOC103468796,LOC106529779,LOC106946608 non-coding upstream 125947 15541557 ~ 15544017 (-)
G155239 NA non-coding upstream 135394 15551004 ~ 15632836 (-)
G155242 hgs non-coding upstream 138433 15554043 ~ 15554886 (-)
G155295 NA non-coding upstream 266759 15682369 ~ 15691652 (-)
LOC120574278 LOC104940298,LOC103361237,LOC102197797,LOC102781856,LOC104946382 other downstream 265067 15106757 ~ 15139853 (-)
LOC120573850 LOC106674513,LOC106098575 other downstream 394580 15009798 ~ 15010340 (-)
LOC120573849 LOC106675063,LOC102783976,LOC102313472,LOC102290019,LOC102295680 other downstream 396208 15003013 ~ 15008712 (-)
ush1ga LOC104944226,LOC103373181,LOC103392806,LOC106949104,LOC104925058,LOC103140944 other downstream 515438 14879627 ~ 14889482 (-)
LOC120575102 fam104b,LOC103373210,LOC101470236,LOC107083185,LOC102083140 other downstream 547340 14851939 ~ 14857580 (-)
metrnla metrnl,LOC102778978 other upstream 27514 15443124 ~ 15449517 (-)
tecra LOC103367165,LOC101076261,LOC106932487,LOC104960308,LOC108241336,LOC106529633,LOC103151989 other upstream 302237 15717847 ~ 15724422 (-)
LOC120574537 NA other upstream 326153 15741763 ~ 15745572 (-)
LOC120574502 LOC103367168,LOC100699371,LOC108241234,LOC101473146,LOC106529605 other upstream 331181 15746791 ~ 15788515 (-)
G155323 LOC108415010,LOC101162128,LOC104945817 other upstream 397448 15813058 ~ 15815369 (-)

Expression


Co-expression Network