LOC120574878


Basic Information

Item Value
gene id LOC120574878
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12874376 ~ 12878214 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825366.1
GTTTATAAAAAGGGTGTGTTGCTACTGTTGGAGTGACTCTGAGGCAATTACAGGACACAGTTTCACATGTTGTGAGCTTAGAATCGAACCAGGTTTACTACATTGTTCAGTCTGGTGAGATGGAGATgcagcacagcagcagcagcagcagcagcagcagtgtgactGACTTTCAGCAGCTGTGGGGAAGTTGGACCACCCTTCTGAAGCGTTTTCATGATGACCCCAAGGTAGCACAGCTGAAGAGCACAAGACTCGGACAGTACCTGAGCAGCCACCCTTTCTTTGCTCTCACAGTGTTGCTGTTCGGCGCCTTGTCTGCACTGCCTGTCGGACTTTTCCTCTCTTTTGCTCTTGTGACCTGTATTATGTCGGCAGtaggttttgttttctttgaagtgtttctgttgtttgtAGGAGGGCTGACTCTGCTGTGTCTGCTACCCGGCATCGCCCTTTTCTCTGTCATGGTTTCAGTCATCTTTAATGTGCTTTATATCACCGCCTCCAACATCCTCAGCCGCTATTACCCGCATCTGACAAAGCAATGTAAAGTCCAGGAGGAGGCGAGTGAATGTGAAACTTCATAACTGAAGGAAATGCAGTAGGTTGATTCTTGAAATGACCCTTCAAATGCACAGTATGTAATAATTTTCTATGCACAAAGACTCCCTGATGGTTACTGTATGTCTAAGGcctaaatattacatatttttctaAAATGCTTGTCATCATCTCTATATCTAGACATTTTATATAGGTGAATTGTTGTGATGTGGGACACTTGCACTCCAGTGGGTGACCTAAAAGTCAATAAATGTAGCTCTCCAATCATACTGTAGAATAGGATGGAGCAATCTTCAGCAGGAAACACCCTGTGTGTagaccttttatatatgtcaatggtgtaGACCACCCAAAGGTCAGTGGCAGTGTTTAAACCAGACTGTAATAAGAAATACATAACATATAAAGACTGAAATAGGGTTCGAAAGGTGGGACAGTTTGATTGGCCTGATGTGGAACAGCATATTTTTTTGCAATAACAATGGTTATTTACAGGGTTTTAGTCTTCTAAtgcattattttaaataaataataataatgtttgagTTCagaaaatttaataaaaattgTTCCACTTAATTCTATGCATATTATTGATTATTCAATGTAATGTATTTCAGATCACAATGGTAAAGAAGAGAAATAAGACACAGAGAAAGGCAGGCAAAAAATCAGGGAAGGAAATTGAATCAGTGGAGGCAGGAAGGATGAGGGGAGCAATAGACTATAGACAGATCGTTGAGGATGGTGGGGTCCCTTGGCTGAGGCTGTTGGCCAGAGCCAATAGCTTGAATGCTATTGACCTGAGATGTTTATATTACATGAATTAAGATAATTTAGGCCTTTTAACATTGTCCCACATTTTGGACATGCAGATTGTCTGAGACAACTTGGCACTAAGAGTACTGATATGTACCATTTCTTTTATTAGTGTGATATagctacattttcttttcttttttggtttgATTAGGACACATCCTGGGGATTTCGGAGTGGTATTGAGTGTGGATGTAATGTGTTGGCTTcatctgaaatgcaaacaatgtCCCACATTTGGCTAATTCAAGAAGAATAAAATGTCTACAACAGCCAAAACATGAATCAACTAACCTTTCAATTGCATTAATAGCCATATACGGAAGACTTATTTTAGTCTAATCCAAACATATTCTATATGCACTATGCACATATCTTGTGAAATGGTGGCTGATTTCAAGTATCAGAGAAAGATGTTGACTCATGGCTGAACAGTGTAGTTAATCCAAATGCACTATTCTATTCAGTCTGAAAATGcctgtgtactgtatgttgtgtatgtcTGCAAATATCTGATGCACATGCTTATTAAGCAAAAGAAATCACTACAAAATAACTGTTACATGTGTGTTTGCTGTTGTAGAAGAAAATGAATTACCTAACAATTTTAGTCTCATTTTATACTGATATCCTCTTTGTGTCGCCTGTGTTAATTAAGTCTGTCTCCCTTTTTGCCTCGCTTAGTATTTAAAACAAAGTATTTTACTTTGGTCACTGTGAGTGAGACTGTTTCTTTAAAGCCCAACCCAGCTCCAGGGGAGTTCACACCTTATTTAACAAAggaccatttttaaatagtttgagATGGTATTGGGTCCATGTAAACCTACTCAGATAGTTTTGTGAGTGAATGTCTTCTCAGCTTTTGTTATTCTGTTGCTTCCTGTAACTTTGTATAGAACCCTGACTAGAAACTCAttctggtcagagagaatcctACAACTTCTTGTGAGCTTCTTTCTCCACTGCGCAGTGAATAAAACTCATCTGAACCAGCCACGGAACTGGACCTGAGAGAACTTTTTCTTCTACACTGTTAACTTTAAAAGAGCACAATGTTGTACGTTTGTAATGCAGCTTTGAATAAATCCTTATCAGGATAAA
>XM_039825367.1
GTTTATAAAAAGGGTGTGTTGCTACTGTTGGAGTGACTCTGAGGCAATTACAGGACACAGTTTCACATGTTGTGAGCTTAGAATCGAACCAGGTTTACTACATTGTTCAGTCTGGTGAGATGGAGATgcagcacagcagcagcagcagcagcagcagcagtgtgactGACTTTCAGCAGCTGTGGGGAAGTTGGACCACCCTTCTGAAGCGTTTTCATGATGACCCCAAGGTAGCACAGCTGAAGAGCACAAGACTCGGACAGTACCTGAGCAGCCACCCTTTCTTTGCTCTCACAGTGTTGCTGTTCGGCGCCTTGTCTGCACTGCCTGTCGGACTTTTCCTCTCTTTTGCTCTTGTGACCTGTATTATGTCGGCAGtaggttttgttttctttgaagtgtttctgttgtttgtAGGAGGGCTGACTCTGCTGTGTCTGCTACCCGGCATCGCCCTTTTCTCTGTCATGGTTTCAGTCATCTTTAATGTGCTTTATATCACCGCCTCCAACATCCTCAGCCGCTATTACCCGCATCTGACAAAGCAATGTAAAGTCCAGGAGGAGGCGAGTGAATGTGAAACTTCATAACTGAAGGAAATGCAGACACATCCTGGGGATTTCGGAGTGGTATTGAGTGTGGATGTAATGTGTTGGCTTcatctgaaatgcaaacaatgtCCCACATTTGGCTAATTCAAGAAGAATAAAATGTCTACAACAGCCAAAACATGAATCAACTAACCTTTCAATTGCATTAATAGCCATATACGGAAGACTTATTTTAGTCTAATCCAAACATATTCTATATGCACTATGCACATATCTTGTGAAATGGTGGCTGATTTCAAGTATCAGAGAAAGATGTTGACTCATGGCTGAACAGTGTAGTTAATCCAAATGCACTATTCTATTCAGTCTGAAAATGcctgtgtactgtatgttgtgtatgtcTGCAAATATCTGATGCACATGCTTATTAAGCAAAAGAAATCACTACAAAATAACTGTTACATGTGTGTTTGCTGTTGTAGAAGAAAATGAATTACCTAACAATTTTAGTCTCATTTTATACTGATATCCTCTTTGTGTCGCCTGTGTTAATTAAGTCTGTCTCCCTTTTTGCCTCGCTTAGTATTTAAAACAAAGTATTTTACTTTGGTCACTGTGAGTGAGACTGTTTCTTTAAAGCCCAACCCAGCTCCAGGGGAGTTCACACCTTATTTAACAAAggaccatttttaaatagtttgagATGGTATTGGGTCCATGTAAACCTACTCAGATAGTTTTGTGAGTGAATGTCTTCTCAGCTTTTGTTATTCTGTTGCTTCCTGTAACTTTGTATAGAACCCTGACTAGAAACTCAttctggtcagagagaatcctACAACTTCTTGTGAGCTTCTTTCTCCACTGCGCAGTGAATAAAACTCATCTGAACCAGCCACGGAACTGGACCTGAGAGAACTTTTTCTTCTACACTGTTAACTTTAAAAGAGCACAATGTTGTACGTTTGTAATGCAGCTTTGAATAAATCCTTATCAGGATAAA
>XM_039825368.1
GTTTATAAAAAGGGTGTGTTGCTACTGTTGGAGTGACTCTGAGGCAATTACAGGACACAGTTTCACATGTTGTGAGCTTAGAATCGAACCAGGTTTACTACATTGTTCAGTCTGGTGAGATGGAGATgcagcacagcagcagcagcagcagcagcagcagtgtgactGACTTTCAGCAGCTGTGGGGAAGTTGGACCACCCTTCTGAAGCGTTTTCATGATGACCCCAAGGTAGCACAGCTGAAGAGCACAAGACTCGGACAGTACCTGAGCAGCCACCCTTTCTTTGCTCTCACAGTGTTGCTGTTCGGCGCCTTGTCTGCACTGCCTGTCGGACTTTTCCTCTCTTTTGCTCTTGTGACCTGTATTATGTCGGCAGtaggttttgttttctttgaagtgtttctgttgtttgtAGGAGGGCTGACTCTGCTGTGTCTGCTACCCGGCATCGCCCTTTTCTCTGTCATGGTTTCAGTCATCTTTAATGTGCTTTATATCACCGCCTCCAACATCCTCAGCCGCTATTACCCGCATCTGACAAAGCAATGTAAAGTCCAGGAGGAGGCGAGTGAATGTGAAACTTCATAACTGAAGGAAATGCAAACCCTGACTAGAAACTCAttctggtcagagagaatcctACAACTTCTTGTGAGCTTCTTTCTCCACTGCGCAGTGAATAAAACTCATCTGAACCAGCCACGGAACTGGACCTGAGAGAACTTTTTCTTCTACACTGTTAACTTTAAAAGAGCACAATGTTGTACGTTTGTAATGCAGCTTTGAATAAATCCTTATCAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825366.1 True 2490 mRNA 0.39 5 12874376 12878214
XM_039825367.1 False 1554 mRNA 0.41 6 12874376 12878214
XM_039825368.1 False 805 mRNA 0.46 6 12874380 12878214

Neighbor

gene id symbol gene type direction distance location
si:ch211-139g16.8 NA coding downstream 10791 12861352 ~ 12863585 (-)
cdr2a LOC104947687 coding downstream 20645 12844396 ~ 12853731 (-)
trnal-uag_2 NA coding downstream 31402 12842893 ~ 12842974 (-)
LOC120574003 LOC104947694,LOC103373535,LOC108239260,LOC101158446,LOC103141614 coding downstream 114320 12753470 ~ 12760056 (-)
LOC120574004 stk19 coding downstream 125216 12746817 ~ 12749160 (-)
gpr139 gpr139 coding upstream 24367 12902581 ~ 12917339 (-)
LOC120574970 NA coding upstream 152002 13030216 ~ 13062840 (-)
LOC120574969 NA coding upstream 186039 13064253 ~ 13073926 (-)
LOC120574972 NA coding upstream 200870 13079084 ~ 13100217 (-)
LOC120574975 NA coding upstream 242647 13120861 ~ 13145929 (-)
G154446 LOC104918798,LOC100695608,LOC101483500,LOC105930091 non-coding downstream 92931 12779015 ~ 12781445 (-)
G154438 NA non-coding downstream 104254 12769409 ~ 12770122 (-)
G154437 LOC104947690 non-coding downstream 105773 12766698 ~ 12768603 (-)
LOC120574720 NA non-coding downstream 195266 12677493 ~ 12679110 (-)
LOC120574718 NA non-coding downstream 305680 12568219 ~ 12568696 (-)
LOC120574707 NA non-coding upstream 53519 12931733 ~ 12938664 (-)
G154600 NA non-coding upstream 374710 13252924 ~ 13253206 (-)
G154601 NA non-coding upstream 376259 13254473 ~ 13254773 (-)
G154713 NA non-coding upstream 777804 13656018 ~ 13692471 (-)
G154717 NA non-coding upstream 877450 13755664 ~ 13827791 (-)
LOC120575506 LOC100697827 other downstream 136893 12735444 ~ 12737483 (-)
cep112 NA other downstream 308905 12427504 ~ 12565471 (-)
LOC120574419 NA other downstream 783395 12085985 ~ 12090981 (-)
G154033 NA other downstream 1648830 11203450 ~ 11225546 (-)
tnrc6c1 LOC103361861 other downstream 1736848 11098316 ~ 11137528 (-)
iqck NA other upstream 76760 12954974 ~ 12972829 (-)
sun1 sun1,LOC104947709,LOC102193096,LOC103360714 other upstream 95046 12973260 ~ 13012781 (-)
prkar1b prkar1b,LOC107661853,LOC107653458 other upstream 457235 13335449 ~ 13421951 (-)
tfap4 tfap4 other upstream 711269 13589483 ~ 13631836 (-)
med9 med9 other upstream 1172524 14050738 ~ 14057354 (-)

Expression


Co-expression Network