LOC120574885 (LOC103375378,LOC104925605,LOC104966930)


Basic Information

Item Value
gene id LOC120574885
gene name LOC103375378,LOC104925605,LOC104966930
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8082138 ~ 8100398 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825384.1
agcCTGTTCTtcactcacactctcactcagCAGAGATTCAAAGGTGGAGAGAGCAAAGATTGTCACCCGGGAAAAAAAAGGTGGGAAGGGACACAgattttcttcctctctcaccaagaaagagacacaaacaagaaaaaagATGGAGAGGATgcaggcagagggagaggaggaccACCTGGAGCGACCAAGCCCACTGACGGACAAGGAGAGGGTGATGATCCAGGAGTCCTGGGCAAAAGTCTACCAGAACTGTGAAGACGTTGGGGTGGCCATTCTACTCAGGCTGTTTGTGAACTTTCCCTCAGCCAAGCAGTACTTCAGCCAGTTCAAGAACATCGAGGACCCAGAGGAGCTGGAGAGGAGTGCCCAGCTTAGGAAGCATGCTCACAGAATCATGAATTCCCTGAATACACTGGTGGAGAGCCTGGACAACTCAGACAAGATGGCCTCAGTGCTGAGAGTGGTGGGCAAGGCCCACGCACTGCGACACAAGGTGGAGCCTGTGTACTTTAAGATCCTGAGTGGCGTGATACTGGAGGTCCTAGGAGAAGAGTTTTCAGAGGTTGTGACACCAGAGGTGGCCGCCGCGTGGACCAAACTCTTGGCTACGGTCTACTTCAGCATCACAGCCATCTATGAGGAAGTGGGCTGGACTAAGCTCTCTTCCTCAACCGGGTGAAGCTTTTAGTATGGGTTTATTGGACCGTGAACTCCCAGATACTTCTGTGTGGCTTCATAAGAGAGGGGGAATTTTACTGTACTGATCTTTGAAGGGAAGCAATGTATTTGGGGAATACAGTTTAATGTAATCTAATTGTAGGCTATGGGACATAATACACTTTAAATAAGAACAGGTATTGGGCTCTTTTTATGGCtaataacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagtaaaAAGTTAAACCTCTCTCCTTGTTTTTATACTCTTGTAAAAGACCACATTTTTAAAAGGAGAGAGCAAAGATGAAGAAAATGCCAACTTAAACCCAACAGTGGACAAGAGGTCACATTTGACTTGGATGTGCCTTCTACCGAATGTGTATATCTAAAAAACTGCCATGTAAATACTGTTCTTTCTAAATATCATGTGGTGTGTCTGTGCCCACTTGGCGCTGTTCACTAGAGATATTAAGaagacatttttacatttttaacagttAATTGTGATGattgtaaattttttttcatcatgaCTCACCTTTGTATTTAACacaattttgaaataaaaacacacaaaaaataactgTGA
>XR_005641918.1
agcCTGTTCTtcactcacactctcactcagCAGAGATTCAAAGGTGGAGAGAGCAAAGATTGTCACCCGGGAAAAAAAAGGTGGGAAGGGACACAgattttcttcctctctcaccaagaaagagacacaaacaagaaaaaagATGGAGAGGATgcaggcagagggagaggaggaccACCTGGAGCGACCAAGCCCACTGACGGACAAGGAGAGGGTGATGATCCAGGAGTCCTGGGCAAAAGTCTACCAGAACTGTGAAGACGTTGGGGTGGCCATTCTACTCAGGCTGTTTGTGAACTTTCCCTCAGCCAAGCAGTACTTCAGCCAGTTCAAGAACATCGAGGACCCAGAGGAGCTGGAGAGGAGTGCCCAGCTTAGGAAGCATGCTCACAGAATCATGAATTCCCTGAATACACTGGTGGAGAGCCTGGACAACTCAGACAAGATGGCCTCAGTGCTGAGAGTGGTGGGCAAGGCCCACGCACTGCGACACAAGGTGGAGCCTGTGTACTTTAAGATCCTGAGTGGCGTGATACTGGAGGTCCTAGGAGAAGAGTTTTCAGAGGTTGTGACACCAGAGGTGGCCGCCGCGTGGACCAAACTCTTGGCTACGGTCTACTTCAGCATCACAGCCATCTATGAGGAAGTGGGCTGGACTAAGCTCTCTTCCTCAACCGGGTGAAGCTTTTAGTATGGGTTTATTGGACCGTGAACTCCCAGATACTTCTGTGTGGCTTCATAAGAGAGGGGGAATTTTACTGTACTGATCTTTGAAGGGAAGCAATGTATTTGGGGAATACAGTTTAATGTAATCTAATTGTAGGCTATGGGACATAATACACTTTAAATAAGAACAGGTATTGGGCTCTTTTTATGGCtaataacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

NR:

description
PREDICTED: cytoglobin-1-like

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K21894 CYGB; cytoglobin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825384.1 True 1316 mRNA 0.45 4 8093052 8100398
XR_005641918.1 False 967 transcript 0.49 5 8082138 8100398

Neighbor

gene id symbol gene type direction distance location
LOC120574881 LOC103375403,LOC100708657 coding downstream 10996 8051991 ~ 8071142 (-)
epn2 epn2 coding downstream 117742 7933459 ~ 7964396 (-)
LOC120574112 LOC107088099,LOC106951959,LOC103151816,LOC106516530 coding downstream 213256 7739579 ~ 7868882 (-)
nubp1 nubp1 coding downstream 760050 7305634 ~ 7322088 (-)
ciita NA coding downstream 779704 7277866 ~ 7302434 (-)
rasd4 LOC100700404,LOC101481289,LOC104966932,LOC102192661,LOC102311216,LOC102790915 coding upstream 14576 8114974 ~ 8115999 (-)
LOC120573855 NA coding upstream 37186 8137584 ~ 8141833 (-)
nptx1l LOC103375324,LOC104929529,LOC100699861 coding upstream 197340 8297738 ~ 8302271 (-)
cdr2l LOC100699057 coding upstream 374082 8474480 ~ 8484692 (-)
recql5 recql5,LOC102306769 coding upstream 387981 8488379 ~ 8504839 (-)
LOC120574882 NA non-coding downstream 15858 8063001 ~ 8066280 (-)
G152756 NA non-coding downstream 603524 7478319 ~ 7478614 (-)
G152748 NA non-coding downstream 712285 7367794 ~ 7369853 (-)
G152738 NA non-coding downstream 725300 7330810 ~ 7356838 (-)
G152729 socs1,LOC100174889 non-coding downstream 876044 7204314 ~ 7206094 (-)
G152924 NA non-coding upstream 191502 8291900 ~ 8292215 (-)
G152925 NA non-coding upstream 192640 8293038 ~ 8293257 (-)
G153106 NA non-coding upstream 349624 8450022 ~ 8454668 (-)
G153111 arhgdia,LOC100706235,LOC107087451 non-coding upstream 362781 8463179 ~ 8558912 (-)
G153112 NA non-coding upstream 367906 8468304 ~ 8470293 (-)
grin2aa grin2a,LOC102780805 other downstream 358224 7569718 ~ 7723914 (-)
arhgdig NA other downstream 1280602 6772880 ~ 6801536 (-)
G152567 NA other downstream 1361495 6719784 ~ 6720643 (-)
G152441 LOC104944083,LOC103371237,LOC107087166,LOC105933549,LOC100701083,LOC101478422 other downstream 1854024 6182408 ~ 6228114 (-)
LOC120574101 NA other downstream 2086949 5991937 ~ 5995189 (-)
G152952 NA other upstream 340781 8441179 ~ 8444381 (-)
G153172 mrps34,LOC102799846 other upstream 630999 8731397 ~ 8733019 (-)
natd1 natd1 other upstream 711932 8812330 ~ 8816305 (-)
tufm tufm,LOC106606342,LOC101070424,LOC106606341,LOC106931188,LOC103145412 other upstream 750045 8850443 ~ 8857571 (-)
zgc:55558 p-ras,LOC105029053,LOC104950842,LOC104930345,LOC103392975,LOC101069736,LOC106606379,LOC103023536,LOC108413997 other upstream 795384 8895782 ~ 8907662 (-)

Expression


Co-expression Network