LOC120574947 (rnf222)


Basic Information

Item Value
gene id LOC120574947
gene name rnf222
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15391738 ~ 15393203 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825464.1
TTCTACAAGGCGCAGCTCTCGCCTCCACCCTCAGCCAACgataaagaagaaagaagaaaagtcaTGCGCTGATTCACACTACATTTACAAAGCAATAGACTTTTAGTCTTAATTTTCCAACTCTCTTGTTGCAGTGGCTGATTTTCCTTCAATGGCATTTCATAAGGAAGATAGCCAGGAGGACGCGCGAGAGTGTCCAGTGTGCTACGAGTGTCTGTCGGGCACAGAGAGGACTCTGAGCTGCGGACATGTATTCTGCCACGACTGTCTGGTCAAAACGCTGGTCAGCATCAACAGCAGCACTCTCAGAGACACTATTGTTTGCCCTATCTGCCGACATCTTACGTTCATCAAGAAACAAAAGGAAGCGCTCGTGTCCCTCGTGGCGGACAAGGATCCAGATGAAGTGCAGACCCTGGAGGTGCCTCTCCCGCCACCGAGACAGCTCCAGAGCGCACGGCGCCACTTCACGGACCGTTTACCGAGGGAAGTTAATTGGATTGCTCGCTGCTTTAGGGGAATGTCTGAAGGAATTCGTCGACATAGGTTGATTAGCCCCAGCCATAATGCATCTCAGATCTTTATCATAAGCACTCAGGGGCGACCCATGGCTGAAGACGATGCGCTCAGTGTTGTGATGACTGTGGTTCAACCCCAGCGCAGGCGAAGGCGCAGGATTTGCACAACTGCACGATGCCTGCTTGTTTTGCTGTCAGCATTTACTATACTGGCACTGGTGGCTGCAACTTTACCCTGGGTTTTGTTGGCATAGCCCAGTGATGTGGATGTGGATTATGAAGTGCCAATAGGAAATGATGAACTGACATTTATAGGAAACATCGTCCCGTCCATGGAATTAAGTTTATACCAGTTAGCCTATGCGATTtgtgaattaattaatttgtcTCACTGATAAAAATAATCTAATGCATTTTAGTAAATAATCGATAAACTGAAAATGTATAATTTAGTCAATATGTTAAACAAGGCAGTTTGAAACATGGTTTGAAGATGTGATTAGGTATTGTAAGTTCCTTCCTAGGCATGTGCATGTCCTTTATGTGCATTACCAAGCAACAGTCTTAAGTAAAGTAAAGGTTAAAGCCTTGACAGTTTAGTCTTTTGTTTTGCATCCCTGTCTGTGGCACGTTCTACTGTTTTATGAAAAGGAAACATGACAATTTCAAAGCACACCCAAAAGTTTGTAAATCCAACAAAAGTGGACTTTTGAAATTATAAtttcaaacaataaataaaagagtttggcagaaataaatgtaataaaaaccaATTAACCATAGGCCTACTTAATCTCATTGTTGTTAAAGCAGCTCAAGTCATTGTTGTGTTACTCTGTTGTTGGAGCAAGCagcggggaaaaaaaactgtaaactgcAGAGCTACAACATCTATCCCACTTTAAGGATTCTTTCCTGTGTGCTCAATGTAAAAATAAGGGGTTACAT

Function

symbol description
rnf222 Predicted to enable metal ion binding activity. Predicted to be integral component of membrane.

NR:

description
PREDICTED: RING finger protein 222

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825464.1 True 1466 mRNA 0.43 1 15391738 15393203

Neighbor

gene id symbol gene type direction distance location
hs3st3b1a LOC104940293,LOC103361242,LOC104959450,LOC101483888,LOC100697618 coding downstream 45178 15334362 ~ 15346560 (-)
LOC120574279 LOC103361235,LOC100701199,LOC102782133,LOC102300456 coding downstream 285113 15101981 ~ 15106625 (-)
baiap2a baiap2,LOC103361233,LOC100696811 coding downstream 291147 15044959 ~ 15100591 (-)
LOC120574429 LOC105009787 coding downstream 391594 14998773 ~ 15000144 (-)
LOC120573908 tspan10 coding downstream 416339 14973352 ~ 14975399 (-)
LOC120574866 acsf2,LOC102294907 coding upstream 11717 15404920 ~ 15415610 (-)
LOC120573906 acsf2,LOC102294907 coding upstream 23842 15417045 ~ 15424203 (-)
tbcd NA coding upstream 83156 15476359 ~ 15505454 (-)
LOC120573957 LOC104960327,LOC108241277,LOC101068065,LOC104918611,LOC102777936 coding upstream 114523 15507726 ~ 15509964 (-)
epn3a epn3 coding upstream 119149 15512352 ~ 15522509 (-)
G155126 NA non-coding downstream 78146 15312080 ~ 15313592 (-)
G155106 NA non-coding downstream 229303 15156429 ~ 15162435 (-)
G155047 NA non-coding downstream 406374 14985134 ~ 14985364 (-)
G155039 NA non-coding downstream 427892 14963233 ~ 14963846 (-)
G155025 NA non-coding downstream 496114 14895379 ~ 14895624 (-)
G155232 LOC104918633,LOC103356299,LOC102214648,LOC102291995,LOC101464722,LOC100701808 non-coding upstream 133746 15526949 ~ 15527605 (-)
G155234 LOC106925874,LOC103468796,LOC106529779,LOC106946608 non-coding upstream 148354 15541557 ~ 15544017 (-)
G155239 NA non-coding upstream 157801 15551004 ~ 15632836 (-)
G155242 hgs non-coding upstream 160840 15554043 ~ 15554886 (-)
G155295 NA non-coding upstream 289166 15682369 ~ 15691652 (-)
LOC120574278 LOC104940298,LOC103361237,LOC102197797,LOC102781856,LOC104946382 other downstream 251885 15106757 ~ 15139853 (-)
LOC120573850 LOC106674513,LOC106098575 other downstream 381398 15009798 ~ 15010340 (-)
LOC120573849 LOC106675063,LOC102783976,LOC102313472,LOC102290019,LOC102295680 other downstream 383026 15003013 ~ 15008712 (-)
ush1ga LOC104944226,LOC103373181,LOC103392806,LOC106949104,LOC104925058,LOC103140944 other downstream 502256 14879627 ~ 14889482 (-)
LOC120575102 fam104b,LOC103373210,LOC101470236,LOC107083185,LOC102083140 other downstream 534158 14851939 ~ 14857580 (-)
metrnla metrnl,LOC102778978 other upstream 49921 15443124 ~ 15449517 (-)
tecra LOC103367165,LOC101076261,LOC106932487,LOC104960308,LOC108241336,LOC106529633,LOC103151989 other upstream 324644 15717847 ~ 15724422 (-)
LOC120574537 NA other upstream 348560 15741763 ~ 15745572 (-)
LOC120574502 LOC103367168,LOC100699371,LOC108241234,LOC101473146,LOC106529605 other upstream 353588 15746791 ~ 15788515 (-)
G155323 LOC108415010,LOC101162128,LOC104945817 other upstream 419855 15813058 ~ 15815369 (-)

Expression


Co-expression Network