grna (LOC104954377,LOC107096383)


Basic Information

Item Value
gene id grna
gene name LOC104954377,LOC107096383
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 22391023 ~ 22401598 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825550.1
ctctctctctctctgtggggcGTGTTCAATAAAGAAGCAGGTCTATTATAATTTGTGTTCTTCAGTGGTGAGACATTTGTGAAAAACCTGACTCCTCATAACAGCCCTTCAGTCTTCTATCAAGatgcagAGGTGGGCTGTGATCTGTTGGGCTCTCCTGGCTCTGGTTGGTGCTGATGAGTGTCCAGATGGAGGGAGATGTGAAGATGGCCAAACCTGCTGCAACGACCCGGCCAGCGGCTTTGAGTGCTGCCCGTTTGATCAGGCTGAGTGCTGTGGGGATCATATACATTGCTGTCCTATGGGAACACTCTGCGATAATGCCACGTCCAGCTGTTTGAACTCTACTGGTTCCATCCCCTGGGTGGAAAGAGCTTCTGCTGAGCAGCCCAGACTCTCGAAATCCTTCAGGATGATCAAGGCGAACATGGGGGAGGAAGACGACAACATCTGTCCTGATCAATCACGATGCCCACCTGAGTATTCCTGTCTGAGGGCTTTGACAAGGTTTGGCTGCTGTCCCCTAGCTCAGGGAGTCCCCTGCTCTGATGGGAAACACTGCTGTCCTGAGAGCCACCAGTGCAGCGCAGACAGCCGCTCATGCGTCAAAAAAGAGCTTGTGTCTACAGTTCTGTGCAGCGACGGCGTGTCAGAGTGTCCAGATGAAACCACCTGCTGTGAAACCCCAGAAGGAAAGTGGGGGTGCTGTCCCATGCCAAAGGCTGTGTGCTGCGAGGATAAGACACACTGCTGTCCTGAAGGGAGTATATGTGATGTTGAACACTCAAAATGTATTTCCTCATCTACCAAAAAACAAACGCCAATGTGGGCCAAACTTCCTGCCAGGATAAGAGCCGACTGGGAGAACCAGAAAGGTGAACAATCCACCGCAGAGACAGTTGTTGACAGTGGCTCAGAAAAAAACCCTGAAGTCCCCACGGTGATTACAGTTCCTCCTTTAGAGAAGGAAGTATCATCTGTCACGAAGGCAGTTGCAGgCAATGATGTCCCATGCAATGATACAGCAGCCTGTCCAGATAACACCACATGCTGTAAAACCAAAGAGGGCGGCTGGGCTTGCTGTCCTTTTCCCGAGGCTGTATGTTGTGAAGATTTCATTCACTGCTGCCCAAAAGGTAAGAAATGTAACCTGGCTGCTCAGAGCTGTGATGACGACACATGTTCTGTGCCGTGGTTCGAAAAGGTACCCGCAATCCCCAGACAGGGCGCGAAGGTACCCGCAATCCCCAGACAGGGCGGACAGGTGGGGAATGTTACATGTGACTCCACCACCAGTTGTCCTGATGGCAGCACCTGCTGCAAGACCACAACAGGAACCTGGGCTTGCTGTCCTTTGCCCGagGCTGTATGTTGTGAAGATTTCATTCACTGCTGCCCAAAAGGTAAGAAATGTAACCTGGCTGCTCAGAGATGTGATGACGACACACGTTCTGGGCCGTGGTTCGAAAAGGTACCCGCAATCCCCAGACAGGGAGCGAAGGTACCCGCAATCCCCAGACAGGGCGCACAGGTGGGGAATGTTACATGTGACTCCACCACCAGTTGTCCTGATGGCAGCACCTGCTGCAAGACCACAACAGGAACCTGGGCCTGCTGTCCTCTACCTCAGgcGGTCTGTTGTGAAGACCATGAACACTGCTGCCCTGCTGGCACCACCTGTGACCTGGCCACGCTTTCGTGTGACGGCACCTTGGGCTCAACGCCCATGATGCAGAAGATACCTGCGGTTGCCACGGCAGCACCCACTACAGTGGCCACTACAACCCAAAGTCAGGCAACAAGCACAGAGCAAACAGTGGAGCCCGAGAAAAAGGAGGTGATAAAAGCACAAGAGACaaaagacgaggaggaggaggagaatgagGAAGATGACGAGAAGGAAGGCATTCAGTGTGACACCCGCACCAGGTGCCCTCCGTCCACTACCTGCTGCTTTATGACCTCATCTCAAAAGTGGGGCTGTTGCCCACTGCCAAAGGCGGTGTGCTGCGCTGACGGGAACCACTGCTGTCCCAACGGCTACACATGCAACGAGAGCGAGACCTCGTGTGTCAAAGGGGAAGTGGTGATTCCCTGGTACACCAAGCTGCCAGCCACCTCCAGCATCGAGGCTGATCCCAGCGCTGTGCAGTGCAACGGGCTGCATCAATGTCCCCAACACACCACCTGCTGCCAGCTGTTGACGGGCGAGTGGGGCTGCTGCCCGCTGCAAAATGCTGTGTGCTGCCCAGACATGAAGCACTGCTGCCCACAGGGTTACACCTGTAACATCGCCTCTAACTCCTGTCAGAAGGTCATCATGCTGCAGCTGGACACCCTCCCGCTAACACCGGTGTCTCTGCCCGAAAATCAACCCCTGCTCGTTGCAAAGCAAAGAGATGTCCCATGTGATGAACAGTACAGCTGTCCAGATAACGAGACCTGTTGCAGGTCCTCCCCTACTACATGGGCCTGCTGTCCATCTCCTAATGCGGTGTGCTGCAAAGACATGCAGACCTGCTGTCCCAACGGCTACACCTGCACCGACACTGGAGACTGCACAAAGGACACCTGGCTCCCCTGGCACAACTGGCACGTGTTCCTCAGCAACAAAAAGAGAGCTCTAATTTTGTGAAAACACCTCCCCTGCACTGTCATCTGTTTCCGCATGCAACGCACTAATTGAAAATAATGTCAAAGGGATTTTATGatcatttttaaatgctttgttcTAAAAGGAAAGTAGTAAAGGGAGAAGGGGACACTGTGACATTGAATTGCACTTCAGAGTTATAATGTTCTGCAACAACTACATGCAACAAGATCAGGGCATTAAGACTTTAATAACTATTTTTAAAAGTCAGATCATTGTTATTACAAGCACAGTTACAAGCTACTTCAAACTCTACTCCAtccataacaaaaaaacactccatAGGCAATATGATTGTATTCCCTGTCAATCAACTTTATCTTCTGCTTTAGCTACCATGTGCTGCAAAGTACACTTCTCTATCAATATTTACTCACAATTGAATCAGGGGTGTCCCCTAAAATCAGTGTTTTAAATTTGTGCATGTTGTTGCCACGGTGAggcaaacataaaaaaaacatgcttgcTCTACATTTTCCATGAAACTAATAAACAAGATCTGATGTGACAACA
>XM_039825551.1
TCCTTCAGGATGATCAAGGCGAACATGGGGGAGGAAGACGACAACATCTGTCCTGATCAATCACGATGCCCACCTGAGTATTCCTGTCTGAGGGCTTTGACAAGGTTTGGCTGCTGTCCCCTAGCTCAGGGAGTCCCCTGCTCTGATGGGAAACACTGCTGTCCTGAGAGCCACCAGTGCAGCGCAGACAGCCGCTCATGCGTCAAAAAAAGAGCTTGTGTCTACAGTTCTGTGCAGCGACGGCGTGTCAGAGTGTCCAGATGAAACCACCTGCTGTGAAACCCCAGAAGGAAAGTGGGGGTGCTGTCCCATGCCAAAGGCTGTGTGCTGCGAGGATAAGACACACTGCTGTCCTGAAGGGAGTATATGTGATGTTGAACACTCAAAATGTATTTCCTCATCTACCAAAAAACAAACGCCAATGTGGGCCAAACTTCCTGCCAGGATAAGAGCCGACTGGGAGAACCAGAAAGGTGAACAATCCACCGCAGAGACAGTTGTTGACAGTGGCTCAGAAAAAAACCCTGAAGTCCCCACGGTGATTACAGTTCCTCCTTTAGAGAAGGAAGTATCATCTGTCACGAAGGCAGTTGCAGgCAATGATGTCCCATGCAATGATACAGCAGCCTGTCCAGATAACACCACATGCTGTAAAACCAAAGAGGGCGGCTGGGCTTGCTGTCCTTTTCCCGAGGCTGTATGTTGTGAAGATTTCATTCACTGCTGCCCAAAAGGTAAGAAATGTAACCTGGCTGCTCAGAGCTGTGATGACGACACATGTTCTGTGCCGTGGTTCGAAAAGGTACCCGCAATCCCCAGACAGGGCGCGAAGGTACCCGCAATCCCCAGACAGGGCGGACAGGTGGGGAATGTTACATGTGACTCCACCACCAGTTGTCCTGATGGCAGCACCTGCTGCAAGACCACAACAGGAACCTGGGCTTGCTGTCCTTTGCCCGagGCTGTATGTTGTGAAGATTTCATTCACTGCTGCCCAAAAGGTAAGAAATGTAACCTGGCTGCTCAGAGATGTGATGACGACACACGTTCTGGGCCGTGGTTCGAAAAGGTACCCGCAATCCCCAGACAGGGAGCGAAGGTACCCGCAATCCCCAGACAGGGCGCACAGGTGGGGAATGTTACATGTGACTCCACCACCAGTTGTCCTGATGGCAGCACCTGCTGCAAGACCACAACAGGAACCTGGGCCTGCTGTCCTCTACCTCAGgcGGTCTGTTGTGAAGACCATGAACACTGCTGCCCTGCTGGCACCACCTGTGACCTGGCCACGCTTTCGTGTGACGGCACCTTGGGCTCAACGCCCATGATGCAGAAGATACCTGCGGTTGCCACGGCAGCACCCACTACAGTGGCCACTACAACCCAAAGTCAGGCAACAAGCACAGAGCAAACAGTGGAGCCCGAGAAAAAGGAGGTGATAAAAGCACAAGAGACaaaagacgaggaggaggaggagaatgagGAAGATGACGAGAAGGAAGGCATTCAGTGTGACACCCGCACCAGGTGCCCTCCGTCCACTACCTGCTGCTTTATGACCTCATCTCAAAAGTGGGGCTGTTGCCCACTGCCAAAGGCGGTGTGCTGCGCTGACGGGAACCACTGCTGTCCCAACGGCTACACATGCAACGAGAGCGAGACCTCGTGTGTCAAAGGGGAAGTGGTGATTCCCTGGTACACCAAGCTGCCAGCCACCTCCAGCATCGAGGCTGATCCCAGCGCTGTGCAGTGCAACGGGCTGCATCAATGTCCCCAACACACCACCTGCTGCCAGCTGTTGACGGGCGAGTGGGGCTGCTGCCCGCTGCAAAATGCTGTGTGCTGCCCAGACATGAAGCACTGCTGCCCACAGGGTTACACCTGTAACATCGCCTCTAACTCCTGTCAGAAGGTCATCATGCTGCAGCTGGACACCCTCCCGCTAACACCGGTGTCTCTGCCCGAAAATCAACCCCTGCTCGTTGCAAAGCAAAGAGATGTCCCATGTGATGAACAGTACAGCTGTCCAGATAACGAGACCTGTTGCAGGTCCTCCCCTACTACATGGGCCTGCTGTCCATCTCCTAATGCGGTGTGCTGCAAAGACATGCAGACCTGCTGTCCCAACGGCTACACCTGCACCGACACTGGAGACTGCACAAAGGACACCTGGCTCCCCTGGCACAACTGGCACGTGTTCCTCAGCAACAAAAAGAGAGCTCTAATTTTGTGAAAACACCTCCCCTGCACTGTCATCTGTTTCCGCATGCAACGCACTAATTGAAAATAATGTCAAAGGGATTTTATGatcatttttaaatgctttgttcTAAAAGGAAAGTAGTAAAGGGAGAAGGGGACACTGTGACATTGAATTGCACTTCAGAGTTATAATGTTCTGCAACAACTACATGCAACAAGATCAGGGCATTAAGACTTTAATAACTATTTTTAAAAGTCAGATCATTGTTATTACAAGCACAGTTACAAGCTACTTCAAACTCTACTCCAtccataacaaaaaaacactccatAGGCAATATGATTGTATTCCCTGTCAATCAACTTTATCTTCTGCTTTAGCTACCATGTGCTGCAAAGTACACTTCTCTATCAATATTTACTCACAATTGAATCAGGGGTGTCCCCTAAAATCAGTGTTTTAAATTTGTGCATGTTGTTGCCACGGTGAggcaaacataaaaaaaacatgcttgcTCTACATTTTCCATGAAACTAATAAACAAGATCTGATGTGACAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825550.1 True 3166 mRNA 0.51 16 22391023 22401598
XM_039825551.1 False 2764 mRNA 0.51 13 22391023 22399898

Neighbor

gene id symbol gene type direction distance location
rundc1 rundc1 coding downstream 1061 22383156 ~ 22389962 (-)
ifi35 NA coding downstream 14146 22370539 ~ 22376877 (-)
LOC120574469 NA coding downstream 44518 22340635 ~ 22346505 (-)
LOC120574468 NA coding downstream 87515 22295190 ~ 22303508 (-)
akt1s1 akt1s1,LOC102786700 coding downstream 164709 22221373 ~ 22226314 (-)
cacng2a cacng2,LOC102214005,LOC100710835,LOC103372897,LOC101463732,LOC108237679 coding upstream 34345 22435943 ~ 22505090 (-)
eif3d NA coding upstream 154414 22556012 ~ 22566132 (-)
sstr3 LOC103373988,LOC100710302 coding upstream 176471 22578069 ~ 22598203 (-)
fam83fa LOC103373437,LOC104946498,LOC104934493,LOC107082014,LOC100708334 coding upstream 245786 22647384 ~ 22669539 (-)
grap2a LOC104946499,LOC103373439 coding upstream 270692 22672290 ~ 22690657 (-)
G157330 NA non-coding downstream 9571 22377944 ~ 22381452 (-)
G157300 LOC100690097,LOC101482526,LOC102787595,LOC104954386 non-coding downstream 136353 22252930 ~ 22254670 (-)
G157287 LOC108237768,LOC103368180,LOC100690364,LOC107378484,LOC103144947 non-coding downstream 171609 22212170 ~ 22219414 (-)
G157205 NA non-coding downstream 291491 22099308 ~ 22099532 (-)
G157203 lrrc4b,LOC102785919 non-coding downstream 302599 22087911 ~ 22088424 (-)
G157312 LOC101166874,LOC107396272,LOC107097254,LOC104954376,LOC103392522,LOC106518874,LOC101065127 non-coding upstream 10294 22411892 ~ 22414160 (-)
G157337 NA non-coding upstream 33705 22435303 ~ 22435878 (-)
G157357 NA non-coding upstream 172239 22573837 ~ 22574108 (-)
G157358 NA non-coding upstream 172771 22574369 ~ 22574604 (-)
G157459 NA non-coding upstream 435068 22836666 ~ 22839222 (-)
G157147 cdhr2 other downstream 535007 21849095 ~ 21856016 (-)
LOC120575106 LOC103367329,LOC107658449,LOC107564019,LOC107674165,LOC104934486 other downstream 634832 21754741 ~ 21756191 (-)
G157096 LOC102782282,LOC100692966,LOC103367351,LOC107084765,LOC104927186,LOC102201015 other downstream 650320 21734382 ~ 21740703 (-)
LOC120574354 NA other downstream 672294 21715014 ~ 21718729 (-)
G157034 NA other downstream 768062 21621030 ~ 21622961 (-)
G157384 LOC102296880,LOC102202593,LOC101475579 other upstream 224188 22625786 ~ 22639389 (-)
LOC120575271 LOC104967158,LOC103366161 other upstream 406938 22808536 ~ 22834656 (-)
tmem100a tmem100,LOC104954564,LOC101486137 other upstream 1043764 23445362 ~ 23448560 (-)
cbx2 cbx2,LOC104963701 other upstream 1125846 23527444 ~ 23534409 (-)
G157645 LOC103366762 other upstream 1731450 24133048 ~ 24138023 (-)

Expression


Co-expression Network