LOC120575000 (LOC100174873)


Basic Information

Item Value
gene id LOC120575000
gene name LOC100174873
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16921146 ~ 16922018 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825560.1
CCTAGAGCCAGCAAAATGGTTGAATGGACAGACTTTGAGCGCGCCACCATCGTGGACATCTTCTCCAAGATGCAGTATGAGGTCGTGGGCCCTGCAGCTCTTGCTAGGTGTCTGATCGTCTACCCCTGGACTCAGAGGTATTTCGGCAACTTTGGAAACCTCTACAACGCCGCTGCTATCTCTGGAAATCCGATGGTTGCAAAACACGGAACAACTATCCTCCACGGTCTGGACCGGGCTGTGAAGAACATGGACAACATCAAGTCAACCTATGCCGAGCTGAGCGTGctgcactctgagaaactgCACGTGGACCCCGACAATTTCAAActccTGTCCGACTGCCTGACCATTGTGGTTGCAGCCCAGTTGGGTAATGATTTCACCGGTGAAGTCCAGGCAGCTTTCCAGAAGTTCCTGGCAGTGGTGGTGTCCTCCTTGGGAAGGCAGTACCACTAGAGAGCTGCAACAGAAGACCGGCACATGCTGATGATTTGTTTAAAAGTTATTTGTTATGtctcaaaaacaaataaaataataagcaAATCCA

Function

NR:

description
beta globin

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K13825 HBE; hemoglobin subunit epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825560.1 True 550 mRNA 0.50 3 16921146 16922018

Neighbor

gene id symbol gene type direction distance location
angptl8 NA coding downstream 44205 16875084 ~ 16876941 (-)
elavl3 elavl3,LOC106607222,LOC102780136,LOC107754020 coding downstream 64298 16840432 ~ 16856848 (-)
s1pr2 s1pr2,LOC103392577 coding downstream 244707 16657915 ~ 16676439 (-)
dnmt1 dnmt1 coding downstream 265187 16643191 ~ 16655959 (-)
icam5 NA coding downstream 299444 16616403 ~ 16621702 (-)
LOC120575001 LOC100174873 coding upstream 3134 16925152 ~ 16925977 (-)
LOC120574105 LOC100174873 coding upstream 7057 16929075 ~ 16935610 (-)
LOC120574104 LOC100174873 coding upstream 17302 16939320 ~ 16940190 (-)
mpg mpg,LOC102785797 coding upstream 39422 16961440 ~ 16963966 (-)
aanat2 LOC106964066,LOC103143768,LOC106942159,LOC103143770,LOC103468705,LOC106934031 coding upstream 82129 17004147 ~ 17005544 (-)
G155722 kank2 non-coding downstream 10067 16910274 ~ 16911079 (-)
G155697 NA non-coding downstream 80859 16839035 ~ 16840287 (-)
G155696 NA non-coding downstream 82429 16836993 ~ 16838717 (-)
G155693 NA non-coding downstream 84757 16834366 ~ 16836389 (-)
G155659 NA non-coding downstream 151208 16767433 ~ 16769938 (-)
G155759 NA non-coding upstream 45775 16967793 ~ 16968083 (-)
G155775 NA non-coding upstream 115160 17037178 ~ 17037710 (-)
G155796 NA non-coding upstream 195254 17117272 ~ 17117596 (-)
G155799 NA non-coding upstream 202172 17124190 ~ 17124481 (-)
G155820 NA non-coding upstream 214801 17136819 ~ 17137082 (-)
G155583 eif3g other downstream 279015 16569446 ~ 16642131 (-)
angptl6 angptl6 other downstream 294413 16621826 ~ 16626733 (-)
LOC120574432 LOC103392867,LOC102312066,LOC104952514,LOC105932031,LOC102787456,LOC101484431,LOC102198284 other downstream 662121 16230459 ~ 16259025 (-)
LOC120574545 chchd5 other downstream 765079 16153787 ~ 16156067 (-)
G155323 LOC108415010,LOC101162128,LOC104945817 other downstream 1105777 15813058 ~ 15815369 (-)
mgrn1b mgrn1 other upstream 90393 17012411 ~ 17023208 (-)
polr3k polr3k other upstream 110967 17032985 ~ 17035040 (-)
unkl unkl,LOC102789129 other upstream 224090 17146108 ~ 17162165 (-)
gper1 gper1,LOC104918709,LOC100699814,LOC101483480 other upstream 243464 17165482 ~ 17173284 (-)
baiap3 baiap3 other upstream 305115 17227133 ~ 17265305 (-)

Expression


Co-expression Network