LOC120575016 (tnpo2,LOC103360699)


Basic Information

Item Value
gene id LOC120575016
gene name tnpo2,LOC103360699
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10954170 ~ 10969756 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825578.1
GGAAGCCGCCATAGGACAATTTCAGTCGGCGTGCTCTTTTGAACAAGAAGAACCGCTACGAAGCACGGGAGGAGAGCGGCCCAGTACGATAATTCAACGTCCAAGTCAATATTGATGGAGTGGCAGCCAGATGAGCAGGGACTTCAGCAGGTCCTCCAGCTGCTCAAAGACTCACAGTCGCCCAACACAGTCACGCAGAGAGCAGTCCAACAAAAACTTGAACAACTCAACCAATTCCCCGACTTCAACAACTATCTCATCTTTGTTCTCACGCGACTCAAAACTGAAGaCGAGCCGACTCGCTCTCTGAGCGGTCTGATACTGAAGAACAATGTTAAGGCCCACTACCAGAATTTCCCCCCAACTGTTGCTGACTTCATCAAGCAGGAATGTCTCAACAACATCGGTGACCCCTCACCGCTCATTCGTGCCACTATTGGCATCCTGATCACTACTATTGCCTCCAAGGGAGAGCTACAAACATGGCCTGAGCTGCTGCCCCAGCTCTGCAACTTGCTCAATTCCGATGACTACAACACCTGCGAGGGCTCGTTTGGAGCACTGCAGAAGATCTGCGAGGACTCCTCGGAGCTGCTGGACAGCGAAGCTCTGAACAGGCCTCTCAACATTATGATACCAAAATTCCTCCAGTTCTTCAAGCACTGCAGCCCCAAGATTAGGTCCCATGCCATCGCCTGTGTGAACCAGTTCATCATTGGCCGAGCCCAGGCCCTAATGGACAACATTGACACCTTCATAGAGAGCCTGTTTGCGCTGGCAGCAGATGAGGACTCTGAGGTTCGAAAGAACGTGTGCCGAGCCCTGGTCATGTTACTGGAGGTCCGCATCGACCGCCTCATCCCCCACATGCACAGCATCATCCAGTACATGCTGCAGAGGACCCAGGACCCAGATGAGAACGTGGCTCTGGAAGCGTGCGAGTTTTGGCTGACTTTAGCGGAGCAACCCATCTGTAAGGAGATGCTGTCTGGACACCTGGCGCAACTGACACCTATCTTGGTAAATGGGATGAAGTATTCAGAGATCGACATCATACTATTAAAAGGCGATGTGGAGGAGGACGAGGCAGTACCGGATAGCGATCAGGACATTAAGCCCCGTTTCCACAAGTCGCGCACGGTCACTTTGCAGCAtgaaggaggaggggagggggaggagggggaggacaTTGAAGATgacgatgacgatgatgatgacaCACTGTCAGATTGGAACCTGCGAAAGTGTTCAGCTGCAGCCCTGGACGTGCTGGCCAACGTGTTTCGTGACGAGCTGCTGCCCCACCTCCTACCGCTCCTGAAAGGCCTGCTCTTCCACCCCGACTGGGTCATCAAGGAGTCTGGCATCCTGGTTTTGGGGGCAATAGCTGAGGGTTGCATGCAGGGCATGGTGCCCTATCTACCGGAGCTGATCCCCCACCTTATCCAGTGTCTCTGTGACAAAAAGGCCCTGGTGCGCTCCATTGCCTGCTGGACCCTGAGTCGCTATGCGCATTGGGTGGTCTCCCAGCCCCCTGACTCCTACCTCAAACCCCTTATGACAGAGCTTCTTAAACGCATCCTGGACGGCAACAAGAGGGTGCAAGAGGCCGCTTGCAGTGCGTTTGCTACCCTAGAAGAGGAGGCGTGCACAGAGCTGGTGCCCTACCTGAGCTTTATCCTGGACACACTGGTGTTTGCCTTTGGGAAGTACCAGCACAAAAATCTCCTCATTCTCTACGATGCCATAGGAACTCTAGCAGACTCAGTGGGTCACCACCTCAATCAGCCTGAGTACATTCAGAAGTTGATGCCCCCCCTTATTGCCAAGTGGAACGAGCTGAAAGATGAAGACAAGGATCTCTTCCCACTACTAGAGTGTCTGTCGTCTGTAGCAACCGCCCTGCAGAGTGGGTTTCTGCCTTACTGTGAGCCTGTCTATCAGCGCTGTGTCACGCTAGTCCAGAAGACACTAGCTCAGGCTATGATGTACAACCAGCATCCAGACCAGTACGAGGCTCCTGACAAGGATTTTATGATTGTGGCCTTGGATCTGCTGAGCGGCCTGGCTGAGGGTTTGGGGGGTCATGTGGAACAGCTAGTGGCCCGCTCGAACATCATGACCCTGCTTTTCCAGTGCATGCAGGATACTATGCCTGAGGTGAGGCAAAGCTCCTTCGCTCTTCTGGGTGATCTAACCAAGGCATGTTTCCTCCATGTTAAGCCCTGCATTGCTGAGTTCATGCCCATCCTGGGGCTCAACCTGAACCCAGAGTTTATCTCAGTGTGTAACAATGCCACCTGGGCCATTGGAGAGATCTCGATGCAAATGGGTGCAGAGATGCAGCCATATGTGGGAATGGTCCTGCCCCACCTAGTTGAGATCATCAATAGACCCAACACACCAAAGACTCTGCTGGAAAACACAGCAATTACGATTGGCAGACTGGGTTATGTGTGTCCCCAGGAGGTGgcaccacagctgcagcaattCATTAGACCAtgGTGCACATCATTGAGGAACATCCGAGATAACGAGGAGAAAGACTCGGCCTTCAGGGGAATCTGTGTGATGATTGGCGTCAACCCTGCAGGAGTGGTGCAGGATTTCATTTTCTTCTGTGACGCTGTGGCCTCCTGGGTCAACCCCAACGACGACCTGAGAGACATGTTTTACAAGATCTTGCATGGCTTTAAGGATCAGGTCGGGGAAGAGAACTGGCAGCAATTCTCGGAGCAGTTCCCCCCTCTGTTGAAGGAGCGCCTGTCGGCCTGCTACGGCGTCTAACCCAACCTCCTCCTTGTCCACACAGGACACCAACCTGTTAGGTTAATGTAGGGGAGGGTTACTGGGGAACTCATTGCACTGCCCAGATTGTGGGGAGAAATGAGAGCTGGAGGGATGTGACTGGCTTTGACCCTTCACTCAGCGGATGGTCCCCTTTCCCCCTGctccctgtgtgtctctctgaggg
>XM_039825580.1
GGCATCCTGATCACTACTATTGCCTCCAAGGGAGAGCTACAAACATGGCCTGAGCTGCTGCCCCAGCTCTGCAACTTGCTCAATTCCGATGACTACAACACCTGCGAGCCTCTCTGTGTATGTCCGTGTCTCAGGGCTCGTTTGGAGCACTGCAGAAGATCTGCGAGGACTCCTCGGAGCTGCTGGACAGCGAAGCTCTGAACAGGCCTCTCAACATTATGATACCAAAATTCCTCCAGTTCTTCAAGCACTGCAGCCCCAAGATTAGGTCCCATGCCATCGCCTGTGTGAACCAGTTCATCATTGGCCGAGCCCAGGCCCTAATGGACAACATTGACACCTTCATAGAGAGCCTGTTTGCGCTGGCAGCAGATGAGGACTCTGAGGTTCGAAAGAACGTGTGCCGAGCCCTGGTCATGTTACTGGAGGTCCGCATCGACCGCCTCATCCCCCACATGCACAGCATCATCCAGTACATGCTGCAGAGGACCCAGGACCCAGATGAGAACGTGGCTCTGGAAGCGTGCGAGTTTTGGCTGACTTTAGCGGAGCAACCCATCTGTAAGGAGATGCTGTCTGGACACCTGGCGCAACTGACACCTATCTTGGTAAATGGGATGAAGTATTCAGAGATCGACATCATACTATTAAAAGGCGATGTGGAGGAGGACGAGGCAGTACCGGATAGCGATCAGGACATTAAGCCCCGTTTCCACAAGTCGCGCACGGTCACTTTGCAGCAtgaaggaggaggggagggggaggagggggaggacaTTGAAGATgacgatgacgatgatgatgacaCACTGTCAGATTGGAACCTGCGAAAGTGTTCAGCTGCAGCCCTGGACGTGCTGGCCAACGTGTTTCGTGACGAGCTGCTGCCCCACCTCCTACCGCTCCTGAAAGGCCTGCTCTTCCACCCCGACTGGGTCATCAAGGAGTCTGGCATCCTGGTTTTGGGGGCAATAGCTGAGGGTTGCATGCAGGGCATGGTGCCCTATCTACCGGAGCTGATCCCCCACCTTATCCAGTGTCTCTGTGACAAAAAGGCCCTGGTGCGCTCCATTGCCTGCTGGACCCTGAGTCGCTATGCGCATTGGGTGGTCTCCCAGCCCCCTGACTCCTACCTCAAACCCCTTATGACAGAGCTTCTTAAACGCATCCTGGACGGCAACAAGAGGGTGCAAGAGGCCGCTTGCAGTGCGTTTGCTACCCTAGAAGAGGAGGCGTGCACAGAGCTGGTGCCCTACCTGAGCTTTATCCTGGACACACTGGTGTTTGCCTTTGGGAAGTACCAGCACAAAAATCTCCTCATTCTCTACGATGCCATAGGAACTCTAGCAGACTCAGTGGGTCACCACCTCAATCAGCCTGAGTACATTCAGAAGTTGATGCCCCCCCTTATTGCCAAGTGGAACGAGCTGAAAGATGAAGACAAGGATCTCTTCCCACTACTAGAGTGTCTGTCGTCTGTAGCAACCGCCCTGCAGAGTGGGTTTCTGCCTTACTGTGAGCCTGTCTATCAGCGCTGTGTCACGCTAGTCCAGAAGACACTAGCTCAGGCTATGATGTACAACCAGCATCCAGACCAGTACGAGGCTCCTGACAAGGATTTTATGATTGTGGCCTTGGATCTGCTGAGCGGCCTGGCTGAGGGTTTGGGGGGTCATGTGGAACAGCTAGTGGCCCGCTCGAACATCATGACCCTGCTTTTCCAGTGCATGCAGGATACTATGCCTGAGGTGAGGCAAAGCTCCTTCGCTCTTCTGGGTGATCTAACCAAGGCATGTTTCCTCCATGTTAAGCCCTGCATTGCTGAGTTCATGCCCATCCTGGGGCTCAACCTGAACCCAGAGTTTATCTCAGTGTGTAACAATGCCACCTGGGCCATTGGAGAGATCTCGATGCAAATGGGTGCAGAGATGCAGCCATATGTGGGAATGGTCCTGCCCCACCTAGTTGAGATCATCAATAGACCCAACACACCAAAGACTCTGCTGGAAAACACAGCAATTACGATTGGCAGACTGGGTTATGTGTGTCCCCAGGAGGTGgcaccacagctgcagcaattCATTAGACCAtgGTGCACATCATTGAGGAACATCCGAGATAACGAGGAGAAAGACTCGGCCTTCAGGGGAATCTGTGTGATGATTGGCGTCAACCCTGCAGGAGTGGTGCAGGATTTCATTTTCTTCTGTGACGCTGTGGCCTCCTGGGTCAACCCCAACGACGACCTGAGAGACATGTTTTACAAGATCTTGCATGGCTTTAAGGATCAGGTCGGGGAAGAGAACTGGCAGCAATTCTCGGAGCAGTTCCCCCCTCTGTTGAAGGAGCGCCTGTCGGCCTGCTACGGCGTCTAACCCAACCTCCTCCTTGTCCACACAGGACACCAACCTGTTAGGTTAATGTAGGGGAGGGTTACTGGGGAACTCATTGCACTGCCCAGATTGTGGGGAGAAATGAGAGCTGGAGGGATGTGACTGGCTTTGACCCTTCACTCAGCGGATGGTCCCCTTTCCCCCTGctccctgtgtgtctctctgaggg

Function

symbol description
tnpo2 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cytoplasm and nucleus. Orthologous to human TNPO2 (transportin 2).

NR:

description
PREDICTED: transportin-2 isoform X2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K18727 TNPO2, IPO3, KPNB2B; transportin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825578.1 True 2974 mRNA 0.53 25 10954170 10969756
XM_039825580.1 False 2562 mRNA 0.54 21 10954170 10966860

Neighbor

gene id symbol gene type direction distance location
fbxw9 NA coding downstream 6500 10942812 ~ 10947670 (-)
dhps dhps,LOC102794989 coding downstream 13003 10931798 ~ 10941167 (-)
LOC120574454 LOC106520401,LOC108239207,LOC102796162 coding downstream 133885 10812853 ~ 10820285 (-)
LOC120574453 NA coding downstream 142745 10808307 ~ 10811425 (-)
spag9a NA coding downstream 181917 10738908 ~ 10772253 (-)
il12rb2l NA coding upstream 5885 10975641 ~ 10987160 (-)
rln3a LOC104944611,LOC103360695 coding upstream 18411 10988167 ~ 10994030 (-)
LOC120574053 LOC104934592,LOC103360693 coding upstream 38886 11008642 ~ 11016591 (-)
c15h17orf75 clg4h17orf75,clg8h17orf75,LOC102789701,LOC101467397,LOC102229770,LOC106934014,LOC106960136 coding upstream 88136 11057892 ~ 11063850 (-)
LOC120574485 NA coding upstream 111963 11081719 ~ 11084573 (-)
G153937 NA non-coding downstream 46562 10905355 ~ 10907608 (-)
G153734 NA non-coding downstream 359163 10594743 ~ 10595007 (-)
G153671 NA non-coding downstream 660004 10286635 ~ 10294166 (-)
G153663 NA non-coding downstream 784731 10163444 ~ 10169439 (-)
G153631 NA non-coding downstream 915385 10034440 ~ 10038785 (-)
G153943 LOC104934589,LOC102791985 non-coding upstream 63450 11033206 ~ 11035516 (-)
G153987 NA non-coding upstream 99287 11069043 ~ 11073776 (-)
G154036 NA non-coding upstream 302063 11271819 ~ 11272848 (-)
G154088 NA non-coding upstream 382447 11352203 ~ 11352565 (-)
G154115 NA non-coding upstream 497152 11466908 ~ 11467112 (-)
LOC120574455 NA other downstream 162605 10784112 ~ 10791565 (-)
gtpbp1 gtpbp1,LOC104924447,LOC102799794 other downstream 563994 10352158 ~ 10390176 (-)
LOC120574648 NA other downstream 1131177 9822145 ~ 9822993 (-)
LOC120574583 NA other downstream 1217336 9735626 ~ 9736834 (-)
LOC120574609 NA other downstream 1220975 9732686 ~ 9733195 (-)
LOC120574486 NA other upstream 108789 11078545 ~ 11080607 (-)
tnrc6c1 LOC103361861 other upstream 128560 11098316 ~ 11137528 (-)
G154033 NA other upstream 233694 11203450 ~ 11225546 (-)
LOC120574419 NA other upstream 1116229 12085985 ~ 12090981 (-)
cep112 NA other upstream 1457748 12427504 ~ 12565471 (-)

Expression


Co-expression Network