hirip3


Basic Information

Item Value
gene id hirip3
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9003265 ~ 9010931 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825590.1
CCTGTAACTTCCGGGGGGTCCTACTGCCGCCAAAAAGAATCAAATAGCCATAGTTAGAAATGAAGGTGTCTGAGAAGGAAAGAGCAGGTATCCGCAGGTTTGTGTGTGCTCAACTCCGTGATGAGCCAGACCTCAGCACACTGACCTTAGGAATTTTAAAAAGGCTATATCTGGCACATGTGGGATGTGAATCACTAAGTCCAGAGGCCAGAAATGTCATGAAAGAGGTGGTTAAAGAGGAACTCATGAAAATGCAGGAAAAAGATGAAAATGGAAGTGAGTTGGAGACTGCGAAGCCCCGAAACAAAAGGAAGAGAGACAAGGAAAATGACGAGATCATAAGTGGtaaagaagatgatgatgatgacgacgatGATGATGAATCCAGGGCAAAGAAATCCCGTCGTCAGTCAACCTCATCATCAGAATCGGAAGACAAAGAGGAAGGTGAAACTGGAAGTGAGGAGGAAGCGCAAATTAAATCTGAGGATAAAGAGCAAGAGGTGAAAAACTCCAAGCGAATAAAAAATGGAAAGGGTAAACCGCAGATAAACAGTGAAGACTCGTCAGATGAGGAAATTAATAAgtcaaaaaaaaagaggaatgaCAGTGACTGTGATGACAGACCAAAAGAAATGGTGATAAAAAGAGCAAATGCTACAAAGACTGGAGAGACCAGAAGCAGCAATACAAGTCAACCGTCATCAGAGAGTGATGAAGAGAATGGAACCGACACGGATAGCAAGTCACTAACGAGTGAAAAAGACAACGGCAATGACTCCTCAGATGACGGTGAAAAAGAAGAAAAAGTCTCTGTGGAAAAGAGAGATAACGACCCAGAGTCCGATTCATCGTCACTCCCCTCAATTGAGGATGAAAAGAATAGcggaaaaaaaaattcacaagatgataaaaagaagaaaaccatgaaaaaagaaaaaagcgacaaaggTCAAAAGCAAGGTGACAAAGCTGTTGTGAGGCTCAAGCACTTCATTTCTCTCTGTGGTCTGAGGCCCAATTACAAGAAGCTCCTCGATGGCTGTCGCTCTGTTCGCTCCCAGGTGGCTGTTCTGAAGAAGGAGCTTGAAGAACTTGGTGTCCAGGGTCAGCCATCTGTTAAGAAGTGCAAAATAGTCCGAATGAAAAGAGAGGAAACTCAGGAACTAGCAGAGCTTGATGTCAGCAACATCATTGCCACAAAAGAATCGGAAGACAAAGAGGAAGGTGAAACTGGAAGTGAGGAGGAAGCGCAAATTAAATCTGAATCTGAGGATGCAGAGCAAGAGGGCAAAAACTCCAAGCGAATAAAAAATGGAAACCGTAAACCGCGGATAAACAGTGAAGACTCGTCAGATGAGGAAATTAATAAGTccaaaaaaaagaggaatgaCAGTGACTGTGATGACAGACCAAAAGAAATGGTGATAAAAAGAGCAAATGCTACAAAGACTGGAGAGACCAGAAGCAGCAATACAAGTCAACCGTCATCAGAGAGTGATGAAGAGAATGGAACCGACACGGATAGCAAGTCACTAACGAGTGAAAAAAACAACGGCAATGACTCCTCAGATGATGGTGAAAAAGAAGAAAAAGTCTCGGTGGAAAAGAGAGATAACGACCCAGAGTCCGATTCATCGTCACTCCCCTCAATTGAGGATGAAAAGAATAGCGGAAAAGAAAATTCACAAGatgataaaaagaagaaaaccgtgaaaaaagaaaaaagcgacagAGGTCAAAAGCAGGGTGACAAAGCTGTTGTGAGGCTCAAGCGCTACATTTCTCTCTGTGGTCTGAGGCCCAATTACAAGAAGCTCCTCGATGGCTGTCGCTCTGTTCGCTCCCAGGTGGCTGTTCTGAAGAAGGAGCTCGAAGAACTTGGTGTCCAGGGTCAGCCATCTGTTAAGAAGTGCAAAATAGTCCGAATGAAAAGAGAGGAAACTCAGGAACTAGCAGAGCTTGATGTCAGCAACATCATTGCCACAAAAGGTCGACCTAAACGCAGAGCAGCCTCAGCATGGCAGGAAAAAAGCGAGCCTCAGTCCTCGACATATCTGCACACTCTGAACTCCGGCTCTGACAGTAATGAGGAAAACGATTCACACAGAGGGCGCAGGAGAACCGACTGGGCCAACCTGCAGGGGATCATCAGTGATGATGCGGACAGCAACTGACATGGACAATTCCTCTTGCAAGCGGTTGCAGTTTTTCAGAGGCCACTTTGGATGTGGACGTTCCCTTTTCTTTGTTCAAGTCGATTTTTGGTCTTTACAAATTATTTTGATACTGAATGTGAtactaaatatttttaaaaccttgATAAACTGATACATGGGGTGACATGTATTGTAATGTAAAATGTACATCTGttatatatttcaaataaaagtattttgctCTAA
>XM_039825591.1
CCTGTAACTTCCGGGGGGTCCTACTGCCGCCAAAAAGAATCAAATAGCCATAGTTAGAAATGAAGGTGTCTGAGAAGGAAAGAGCAGGTATCCGCAGGTTTGTGTGTGCTCAACTCCGTGATGAGCCAGACCTCAGCACACTGACCTTAGGAATTTTAAAAAGGCTATATCTGGCACATGTGGGATGTGAATCACTAAGTCCAGAGGCCAGAAATGTCATGAAAGAGGTGGTTAAAGAGGAACTCATGAAAATGCAGGAAAAAGATGAAAATGGAAGTGAGTTGGAGACTGCGAAGCCCCGAAACAAAAGGAAGAGAGACAAGGAAAATGACGAGATCATAAGTGGtaaagaagatgatgatgatgacgacgatGATGATGAATCCAGGGCAAAGAAATCCCGTCGTCAGTCAACCTCATCATCAGAATCGGAAGACAAAGAGGAAGGTGAAACTGGAAGTGAGGAGGAAGCGCAAATTAAATCTGAGGATAAAGAGCAAGAGGTGAAAAACTCCAAGCGAATAAAAAATGGAAAGGGTAAACCGCAGATAAACAGTGAAGACTCGTCAGATGAGGAAATTAATAAgtcaaaaaaaaagaggaatgaCAGTGACTGTGATGACAGACCAAAAGAAATGGTGATAAAAAGAGCAAATGCTACAAAGACTGGAGAGACCAGAAGCAGCAATACAAGTCAACCGTCATCAGAGAGTGATGAAGAGAATGGAACCGACACGGATAGCAAGTCACTAACGAGTGAAAAAGACAACGGCAATGACTCCTCAGATGACGGTGAAAAAGAAGAAAAAGTCTCTGTGGAAAAGAGAGATAACGACCCAGAGTCCGATTCATCGTCACTCCCCTCAATTGAGGATGAAAAGAATAGcggaaaaaaaaattcacaagatgataaaaagaagaaaaccatgaaaaaagaaaaaagcgacaaaggTCAAAAGCAAGGTGACAAAGCTGTTGTGAGGCTCAAGCACTTCATTTCTCTCTGTGGTCTGAGGCCCAATTACAAGAAGCTCCTCGATGGCTGTCGCTCTGTTCGCTCCCAGGTGGCTGTTCTGAAGAAGGAGCTTGAAGAACTTGGTGTCCAGGGTCAGCCATCTGTTAAGAAGTGCAAAATAGTCCGAATGAAAAGAGAGGAAACTCAGGAACTAGCAGAGCTTGATGTCAGCAACATCATTGCCACAAAAGAATCGGAAGACAAAGAGGAAGGTGAAACTGGAAGTGAGGAGGAAGCGCAAATTAAATCTGAATCTGAGGATGCAGAGCAAGAGGGCAAAAACTCCAAGCGAATAAAAAATGGAAACCGTAAACCGCGGATAAACAGTGAAGACTCGTCAGATGAGGAAATTAATAAGTccaaaaaaaagaggaatgaCAGTGACTGTGATGACAGACCAAAAGAAATGGTGATAAAAAGAGCAAATGCTACAAAGACTGGAGAGACCAGAAGCAGCAATACAAGTCAACCGTCATCAGAGAGTGATGAAGAGAATGGAACCGACACGGATAGCAAGTCACTAACGAGTGAAAAAAACAACGGCAATGACTCCTCAGATGATGGTGAAAAAGAAGAAAAAGTCTCGGTGGAAAAGAGAGATAACGACCCAGAGTCCGATTCATCGTCACTCCCCTCAATTGAGGATGAAAAGAATAGCGGAAAAGAAAATTCACAAGatgataaaaagaagaaaaccgtgaaaaaagaaaaaagcgacagAGGTCAAAAGGGTGACAAAGCTGTTGTGAGGCTCAAGCGCTACATTTCTCTCTGTGGTCTGAGGCCCAATTACAAGAAGCTCCTCGATGGCTGTCGCTCTGTTCGCTCCCAGGTGGCTGTTCTGAAGAAGGAGCTCGAAGAACTTGGTGTCCAGGGTCAGCCATCTGTTAAGAAGTGCAAAATAGTCCGAATGAAAAGAGAGGAAACTCAGGAACTAGCAGAGCTTGATGTCAGCAACATCATTGCCACAAAAGGTCGACCTAAACGCAGAGCAGCCTCAGCATGGCAGGAAAAAAGCGAGCCTCAGTCCTCGACATATCTGCACACTCTGAACTCCGGCTCTGACAGTAATGAGGAAAACGATTCACACAGAGGGCGCAGGAGAACCGACTGGGCCAACCTGCAGGGGATCATCAGTGATGATGCGGACAGCAACTGACATGGACAATTCCTCTTGCAAGCGGTTGCAGTTTTTCAGAGGCCACTTTGGATGTGGACGTTCCCTTTTCTTTGTTCAAGTCGATTTTTGGTCTTTACAAATTATTTTGATACTGAATGTGAtactaaatatttttaaaaccttgATAAACTGATACATGGGGTGACATGTATTGTAATGTAAAATGTACATCTGttatatatttcaaataaaagtattttgctCTAA

Function

NR:

description
HIRA-interacting protein 3 isoform X6

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03410 Base excision repair
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825590.1 True 2405 mRNA 0.43 12 9003265 9010931
XM_039825591.1 False 2402 mRNA 0.43 12 9003265 9010931

Neighbor

gene id symbol gene type direction distance location
antkmt LOC103374876 coding downstream 114 8998880 ~ 9003151 (-)
xpo6 xpo6,LOC102794690 coding downstream 4895 8973823 ~ 8998370 (-)
nme4 LOC104945280,LOC106931198,LOC106951632,LOC108242919,LOC100703020 coding downstream 29617 8969882 ~ 8973648 (-)
slc6a16a LOC103374926,LOC104930347,LOC104945282 coding downstream 47979 8943059 ~ 8955286 (-)
slc17a7a LOC104930346,LOC103374936,LOC102793338,LOC101484681,LOC100693903 coding downstream 60948 8924601 ~ 8942317 (-)
kctd13 kctd13,LOC104945278 coding upstream 292 9011223 ~ 9018740 (-)
sez6l2 sez6l2 coding upstream 9155 9020086 ~ 9036828 (-)
cabp5b LOC104945275,LOC103374841,LOC100700336,LOC104930357 coding upstream 32482 9043413 ~ 9048123 (-)
LOC120574368 NA coding upstream 380634 9391565 ~ 9406804 (-)
LOC120574369 NA coding upstream 396923 9407854 ~ 9408482 (-)
G153137 NA non-coding downstream 226999 8700109 ~ 8776266 (-)
G153139 NA non-coding downstream 318512 8659611 ~ 8684753 (-)
G153143 NA non-coding downstream 355974 8647083 ~ 8647291 (-)
G153142 NA non-coding downstream 358240 8644784 ~ 8645025 (-)
G153130 atp2a1 non-coding downstream 387153 8612277 ~ 8616112 (-)
G153274 NA non-coding upstream 50365 9061296 ~ 9111224 (-)
G153275 NA non-coding upstream 54065 9064996 ~ 9085687 (-)
G153455 NA non-coding upstream 185827 9196758 ~ 9203859 (-)
G153456 NA non-coding upstream 188727 9199658 ~ 9501467 (-)
G153462 NA non-coding upstream 208668 9219599 ~ 9219903 (-)
zgc:55558 p-ras,LOC105029053,LOC104950842,LOC104930345,LOC103392975,LOC101069736,LOC106606379,LOC103023536,LOC108413997 other downstream 95603 8895782 ~ 8907662 (-)
tufm tufm,LOC106606342,LOC101070424,LOC106606341,LOC106931188,LOC103145412 other downstream 145694 8850443 ~ 8857571 (-)
natd1 natd1 other downstream 186960 8812330 ~ 8816305 (-)
G153172 mrps34,LOC102799846 other downstream 270246 8731397 ~ 8733019 (-)
G152952 NA other downstream 558884 8441179 ~ 8444381 (-)
LOC120574599 NA other upstream 176319 9187250 ~ 9204006 (-)
LOC120574343 NA other upstream 178453 9189384 ~ 9190066 (-)
LOC120574654 NA other upstream 181055 9191986 ~ 9192402 (-)
LOC120574662 NA other upstream 206138 9217069 ~ 9224455 (-)
LOC120574348 NA other upstream 209610 9220541 ~ 9221090 (-)

Expression


Co-expression Network