LOC120575081 (csnk1e,LOC101067908)


Basic Information

Item Value
gene id LOC120575081
gene name csnk1e,LOC101067908
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5111472 ~ 5123509 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825686.1
GAGAGGGGGAGACAGACTCGAGTGGAGAGAACGGCCGCCAGTGCTGCTGAAGCTTCTCAGGGACTATCAACAGGGAGCGCAACCGACGACAGAGCAAAGAGCTGGGGGTATGAGAGCCGCCAGAATCCGCTCCAATCCTCTTCAGTCCAGGCCCCTGTCCGACTGACAACTATCGGATCAGAACCTCCACTGAACCAGCTCTCGGACGAACCCAATATCGGTGGTGACTCGCAAACATGGAGCTGAGAGTGGGGAACAAGTACCGGCTCGGGCGGAAGATAGGGAGTGGCTCCTTTGGCGACATTTACCTTGGTGCCAACATTGCCACTGGTGAGGAGGTAGCCATCAAGCTGGAATGTGTGAAGACCAAACACCCACAGTTGCACATTGAAAGCAAGTTCTACAAGATGATGCAAGGAGGAGTGGGTATTCCATCGATAAAGTGGTGTGGTGCAGAGGGAGACTACAACGTGATGGTAATGGAGCTGCTCGGTCCCAGTCTGGAGGACCTTTTCAACTTTTGCTCCCGGAAGTTCAGCCTAAAGACGGTCCTGCTTCTGGCAGACCAGATGATTAGTCGCATTGAGTACATCCACTCCAAGAATTTCATCCATCGGGATGTTAAGCCTGACAACTTCCTAATGGGGCTTGGCAAGAAGGGTAACCTGGTGTACATCATTGACTTTGGCCTGGCCAAAAAGTACCGCGATGcccgcacacaccagcacatcCCTTACAGGGAGAATAAAAACCTGACTGGCACAGCGCGCTACGCCTCCATCAACACACATCTTGGAATCGAGCAGTCCAGACGTGACGACCTGGAGTCTCTCGGCTATGTCCTCATGTACTTCAACCTGGGCTCCCTCCCCTGGCAGGGACTCAAGGCCGCTACCAAGAGACAGAAGTATGAACGAATCAGTGAGAAGAAAATGTCCACACCCATCGAGGTTCTTTGCAAAGGATACCCTTCTGAGTTCTCCACATACCTGAATTTTTGCCGTTCACTCCGTTTTGATGACAAGCCAGACTACTCTTACCTACGACAGCTCTTCAGGAATCTGTTCCACCGTCAGGGTTTCTCCTACGACTATGTCTTTGACTGGAACATGCTCAAATTTGGTGCCAGTCGGACAGCCGAGGATGGGGATCGGGAGAGGAGGACGGGAgatgagcgggatgagcgtaTCGGAGGAGCCCCGAGGGGGTCTGCATCGCGGGGCCTGCCCCCAGGTCCCAACCCTGCAGCTGCCAACAGAGTCAGGAATGGGCCAGAGCAGGCCATCTCTAACCCTGCCTCACGGGTTCAGCAGTCTGGGAACACGTCACCTCGTGCAATTTCTCgcgcagagagggagaggaaggtgAGCATGCGGCTCCACCGTGGGGCTCCTGCCAACGTATCGTCCTCTGACCTCACAGCCCGTCATGACCAATCCAGAATTTCCACATCACAGGTCAGCGTGCCATTTGAGCACATGGGGAAGTAGAATTATTTGGCTCTGCATGCACATGAAACTGACAGGGCTGCAAGGTATATTCATCGCTccgattttattttcctttttattcttACCTTGTTTTATGAAAAGATGATTGCCAATGGACACATGGATCTTTGGAAAAGGACCGTAAATCTTTAAAGGACCGTAATTCTTTAAAGGATCCAGAGAAGTACATGGCAGTATCCAACACGCACTCTTTAATGGACCCTTTTTGCTGAACCGTGGACCACCACCGTCCCCACAATACAAAAAGCAAATGAGTGACAGTCCTACACCATTTTTACTCCCATGGTTGCTCATACCTGCTCCACTCATTAAAAAATGTCCCTCAGTACCTTCTGTCTGACAAATGTGAAGATCTGTTTGCATCAAAGAAGCAAAACTGTATCAGGGACACACGCATGATTCTCGTCATAGGTCAACTTAGTGATTAATAATAGGCTTAGTAAAGATTTATCttaatttttctttctttttccagtTAAACACCGCAACATTTCAGTGTGTCATCTTGTATGAGGATATCTTAAATTGGAGCTTGTTATGAGTTTCCTTTCTTTGCTTCTTTCTGAGAGAAATAACAgctaaaatatgaagaaatggGGAGCGGTAGGTGAGAGGCTAGTGGACAAGAAGAAAGGCGACTTTGAAAAGGATAAGTAGGTGATGTTTTAGCTGTTGTAGAGTAATGTTTCTGGTGAAGTAGCAGTTGGTGCTTGCTTGCCCCCTTCATCCATGTTGTGATTATTTGCTGTCCCTCAAAACTCACCAAAACTCCACCACCCCTTATGTTGCCTGTTTGGACTTGCGTGTTTTCTTTGGTTTTAATGTGGGCGGGTAAGGTGAAGAATGACATAGATATTGCAAAGACATACTCCCAAGTCTTGAGGGATGGTCCTCAGGAAATCCTCAGTGTATTTGACCAGAGACCATAGCTGCCCGTTTTGGCTAACAAATAGTGGCTGCAATTTTTATGATTGTTCTAAAtgttacctttttattttattttttaattctttttgtTATTGGAGGTCATAGGGGAGTAGGCAGGCTCTTTTGGGGAAGTCTCTTAGGGGGATGGGAtatcaatgatttttttttttttttttatgtttacttcactgtaaatatttttttatttccatgtaAAGCCAAAATGTGGTTATTTGTTTTACAAcataaagttgaaaaaatgtatacTAATGACATAAATTGGGGCTGGGTTCAGAATTTTAGGCATTTTAAAGTACTAAATTGTGGGATAGGCTACTGTTACTTTGCGAGCTGGGTCAtcaaatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagtgatacAGGGAATCCCTGCTAAAAATACAATTTGTTCATTTTGTCTGTTTGTAGATAGTTTTTATCCCCTCTGCTATTTATGTTAAACTATTTTTTATGGGTCTGAAATAACTTTGTCCTTTTTTGttcttatttttgttttcatttcatctTCCTGTAACTTATTAGAAGTAGCTTGTTTGTTcaggttattttttttgcctgtccctttcttcttctgttcttGTGCTTCAAAGGTTGTCCACCTCCTTATAATAAATAGGGCTTTTAATATTCCTTCTGCAAAAATGATATGCTAATAGTTtgatgtcaccttttggattttAACCTCCAGCAACTTTGATGATGTCATTCAAAGGAAAACATAACCGATGCAAATGCAGGGATgtgtaaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtataattACCTTTGTACAGGCCACCATGACCCAGTAGCATTGTAACTGTTGGGAACGGTATAGAAGAGGTTGAGGTGATGGGGATTTAACTTTATGTATTGTGTACTGATATCTTGTACAGTTCTTTAACACACTTTATTTACAACAGTATTTGTGTATATTTTATGaagtaataaaaatgaataatgtTGCTCACAACTGA

Function

symbol description
csnk1e Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including peptidyl-serine phosphorylation; positive regulation of canonical Wnt signaling pathway; and positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in brain; eye; notochord; and otic vesicle. Human ortholog(s) of this gene implicated in invasive ductal carcinoma. Orthologous to several human genes including TPTEP2-CSNK1E (TPTEP2-CSNK1E readthrough).

NR:

description
PREDICTED: casein kinase I isoform epsilon-like isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08960 CSNK1E; casein kinase 1, epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825686.1 True 3494 mRNA 0.44 11 5111472 5123509

Neighbor

gene id symbol gene type direction distance location
LOC120575080 tmem184b,LOC102777864,LOC101067677 coding downstream 160 5093585 ~ 5111312 (-)
LOC120575087 ddx17 coding downstream 18331 5083750 ~ 5093141 (-)
LOC120575086 NA coding downstream 39373 5063039 ~ 5072099 (-)
polr2f polr2f,LOC107727050 coding downstream 49199 5058168 ~ 5062273 (-)
kdelr3 kdelr3 coding downstream 107008 5000326 ~ 5004464 (-)
LOC120575075 LOC103368117 coding upstream 1453 5124962 ~ 5141113 (-)
zmp:0000000896 card10 coding upstream 19602 5143111 ~ 5161937 (-)
LOC120575084 LOC105918010 coding upstream 152698 5276207 ~ 5281641 (-)
gucy2ca gucy2c coding upstream 186091 5309600 ~ 5326670 (-)
LOC120575093 LOC104932054,LOC103370794,LOC101074219,LOC100695912,LOC101476535 coding upstream 226660 5350169 ~ 5358831 (-)
G151951 NA non-coding downstream 87380 5013517 ~ 5024092 (-)
G151924 NA non-coding downstream 218154 4869887 ~ 4893318 (-)
G151799 NA non-coding downstream 527312 4583204 ~ 4584160 (-)
G151790 NA non-coding downstream 587898 4518781 ~ 4523574 (-)
G151785 NA non-coding downstream 632593 4477384 ~ 4478879 (-)
G152052 NA non-coding upstream 46795 5170304 ~ 5170652 (-)
G152081 NA non-coding upstream 164349 5287858 ~ 5290361 (-)
G152104 tob2 non-coding upstream 266996 5390505 ~ 5395115 (-)
G152107 NA non-coding upstream 322994 5446503 ~ 5448057 (-)
G152233 ep300 non-coding upstream 385208 5508717 ~ 5509392 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other downstream 345979 4585173 ~ 4765493 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other downstream 646481 4416177 ~ 4464991 (-)
LOC120575464 NA other downstream 744129 4361848 ~ 4367343 (-)
G151344 smarca4 other downstream 1794557 3311727 ~ 3316915 (-)
G151227 LOC103393680 other downstream 2196105 2911326 ~ 2915367 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other upstream 54807 5178316 ~ 5227241 (-)
G152114 rbx1 other upstream 338337 5461846 ~ 5464418 (-)
top3a top3a,LOC102783137 other upstream 425782 5549291 ~ 5567539 (-)
atp5mf atp5j2,LOC102786280 other upstream 451171 5574680 ~ 5613722 (-)
bud31 bud31,LOC106595689 other upstream 456754 5580263 ~ 5582864 (-)

Expression


Co-expression Network