LOC120575084 (LOC105918010)


Basic Information

Item Value
gene id LOC120575084
gene name LOC105918010
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5276207 ~ 5281641 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825689.1
CTTCACTGGTTTCCCATTCACGCCCGTGAGCTCATCACCTGCTGCCAGTGTCCCATCCAGAGCGGCCGGGGTATTATCAAAGACCTGTTAGACGACAGAAACCACATTTAAAAGGGCAGAAGATCTTCCTACATCTTCCTTCAACTCCAGGACTGTTGTTCACCAACACCAGCAACCAAAATAAACATGCAACTTGAAATGAAGAACGTACATCTGAGAGTTGGAGATCGGCTGAAAGTGAAGGGGGAAATCATGCATGATGCTGAGAGATTCCAGATCGACCTCGGCAGTGGTGCAGACGACCTGGCGCTGCACTTTAACCCTCGTTTCCACGACGACGACGATGGAGCTGTTCTCGTTTGCAACTCAAAGATTGACGGTTGTTGGGGCGATGAGAAACGTGAAATACACAACCCCCTACAGAGGGGCACAGATGTCAAGCTTGTGTTGAAGCTGGTTGGAGACATGTTTGAAGTGGAGCTTCCTAATGGACAGGAAGTCCAGTTCCCTAACCGTCACAACATGGACGTCATCAGCTACATTAAAATCGTTGGGGACTTCAACCTGACTTCCTTCAAGATATGCTAAGAGACAAAACTGCTGTAACACATGAATACTGCGTGTATCAGTTTGGTTAAAGTCGAGACTTTGAGACTTTGTCGGTTATTGTTAGACATATAAATCAATGTAGATCTTCAGTGAATTGGAAATGtatctttatttaaaaatgctgtgttgtgcactagaatataaaatgtttaaatccaaatgatcatgttttgttttatttgaaggGTTGTAACACTAACATTATCAGCCTAGTAATGAGAGAGCAGCAAATCCAATTAAagtttttacacacat
>XM_039825691.1
ATcagtaatgattaaaaagagCCGTGCCTCTGCATTGAAAGGGGCTTCTTGATTGTCATGATGATTACTGGCCGACATTGTAACTGTTAAAAGTCCTTTCACTGAATCTGTTGTGCTTCCCGTTATAAATTAGGTGACATTTCACAGTCACAGTACTTACTTTTTGTCTTCCAGGGCAGAAGATCTTCCTACATCTTCCTTCAACTCCAGGACTGTTGTTCACCAACACCAGCAACCAAAATAAACATGCAACTTGAAATGAAGAACGTACATCTGAGAGTTGGAGATCGGCTGAAAGTGAAGGGGGAAATCATGCATGATGCTGAGAGATTCCAGATCGACCTCGGCAGTGGTGCAGACGACCTGGCGCTGCACTTTAACCCTCGTTTCCACGACGACGACGATGGAGCTGTTCTCGTTTGCAACTCAAAGATTGACGGTTGTTGGGGCGATGAGAAACGTGAAATACACAACCCCCTACAGAGGGGCACAGATGTCAAGCTTGTGTTGAAGCTGGTTGGAGACATGTTTGAAGTGGAGCTTCCTAATGGACAGGAAGTCCAGTTCCCTAACCGTCACAACATGGACGTCATCAGCTACATTAAAATCGTTGGGGACTTCAACCTGACTTCCTTCAAGATATGCTAAGAGACAAAACTGCTGTAACACATGAATACTGCGTGTATCAGTTTGGTTAAAGTCGAGACTTTGAGACTTTGTCGGTTATTGTTAGACATATAAATCAATGTAGATCTTCAGTGAATTGGAAATGtatctttatttaaaaatgctgtgttgtgcactagaatataaaatgtttaaatccaaatgatcatgttttgttttatttgaaggGTTGTAACACTAACATTATCAGCCTAGTAATGAGAGAGCAGCAAATCCAATTAAagtttttacacacatttttccCCCGTAA

Function

NR:

description
galectin-1-like

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K10090 LGALS2; galectin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825689.1 False 864 mRNA 0.43 5 5276220 5281641
XM_039825691.1 True 937 mRNA 0.41 4 5276207 5279281

Neighbor

gene id symbol gene type direction distance location
zmp:0000000896 card10 coding downstream 114270 5143111 ~ 5161937 (-)
LOC120575075 LOC103368117 coding downstream 135094 5124962 ~ 5141113 (-)
LOC120575081 csnk1e,LOC101067908 coding downstream 152698 5111472 ~ 5123509 (-)
LOC120575080 tmem184b,LOC102777864,LOC101067677 coding downstream 164895 5093585 ~ 5111312 (-)
LOC120575087 ddx17 coding downstream 183066 5083750 ~ 5093141 (-)
gucy2ca gucy2c coding upstream 27959 5309600 ~ 5326670 (-)
LOC120575093 LOC104932054,LOC103370794,LOC101074219,LOC100695912,LOC101476535 coding upstream 68528 5350169 ~ 5358831 (-)
polr3h polr3h coding upstream 78816 5360457 ~ 5366750 (-)
LOC120574211 aco2,LOC103370792,LOC105918004 coding upstream 85424 5367065 ~ 5384844 (-)
tefb LOC106601241,LOC106607162,LOC107091051 coding upstream 117382 5399023 ~ 5413979 (-)
G152052 NA non-coding downstream 105555 5170304 ~ 5170652 (-)
G151951 NA non-coding downstream 252115 5013517 ~ 5024092 (-)
G151924 NA non-coding downstream 382889 4869887 ~ 4893318 (-)
G151799 NA non-coding downstream 692047 4583204 ~ 4584160 (-)
G151790 NA non-coding downstream 752633 4518781 ~ 4523574 (-)
G152081 NA non-coding upstream 6217 5287858 ~ 5290361 (-)
G152104 tob2 non-coding upstream 108864 5390505 ~ 5395115 (-)
G152107 NA non-coding upstream 164862 5446503 ~ 5448057 (-)
G152233 ep300 non-coding upstream 227076 5508717 ~ 5509392 (-)
G152249 pdap1,LOC102785718 non-coding upstream 301738 5583379 ~ 5587735 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other downstream 48966 5178316 ~ 5227241 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other downstream 510714 4585173 ~ 4765493 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other downstream 811216 4416177 ~ 4464991 (-)
LOC120575464 NA other downstream 908864 4361848 ~ 4367343 (-)
G151344 smarca4 other downstream 1959292 3311727 ~ 3316915 (-)
G152114 rbx1 other upstream 180205 5461846 ~ 5464418 (-)
top3a top3a,LOC102783137 other upstream 267650 5549291 ~ 5567539 (-)
atp5mf atp5j2,LOC102786280 other upstream 293039 5574680 ~ 5613722 (-)
bud31 bud31,LOC106595689 other upstream 298622 5580263 ~ 5582864 (-)
LOC120574101 NA other upstream 710296 5991937 ~ 5995189 (-)

Expression


Co-expression Network