LOC120575086


Basic Information

Item Value
gene id LOC120575086
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5063039 ~ 5072099 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825693.1
AAAACCTTTCCAAAGTAACAAGTGTTTATGGTTTGTTGTAAGCTTAAACTAATGCAATGACTGTTGAAGGATTTAAATGGACAAATTGCCTGTTTTGATAacataaaacaatatattataTCTGGCTGCCACGCTCTGAatagaaagagaagagaagagaagagaaatgaAGTTGTAACCAGAAACCTCTCCTGCCTAATTATAGACAAAGATCCTCTAAACCTAAACCGTCTCTGTTATAGAGAAGCAGCagctctgtgtctccctccagCGGCAGCTATTGTGCACTTCAGTTCACTCAATGTGGACCACAACAACAAGGAGTATACAGCAAGTAACGGGATTTGATATGTACACCTCTTTTATGAAATCGACCAGGAGTCCTCATCGGATCACTGCAGATGTCTTCAGGTTGCCACTCCCAGAAGCTCGTTGGAGCTGCAGGGTGAATGCTGGTTGGGTTTCCTGTTTCCTCCTCAACGCCAAACCTGCCCAGCTTCATTTGATCTCCTCTAACTTACAAAGTGACATGTTCAGCCAGCCCACATGTCAAATCTCACACAAGAAAATGACATCCCCGAAGGCTGTACGAGAGTGGTGCCGCTCCACATGCGCAGGTTACCCCAATGTGGAAATAAAGAACATGTCAACCTCATTCAGAGATGGACTTGCATTCTGTGCCATCATCCACAAACACCGACCTGACTTGATAGATTTCAGCTCCCTCTCCAAAGATAATGTTTATCAAAATAACAAACTGGCATTTGAGGTTGCAGAGGAAAAGCTGGCCATCCCTGCGTTGCTGGACCCAAAGTACATGGTTTCCACCAAGGTGCCTGATAGTTTGAGCATCGTCACCTACCTTTCCCAGTACTTCTACTTCTTCAACAGGAAGTCTTATGCAGGTATTGCCAGTTTGAGGTCATCACACGTCCCTTTCTTGAACAACCTCACAAAAAGTAAAACTCCTGATGATGTGAACCCCCTGAAGaGCCTGACTGATCTGGAAACCAGTAGAGAAGATCGTTTATCCGACACAAGGCCACAAACGGTGTGTAGTTTGTGTTTTAAGCCTGTCCACCTTATACAGAGACATTTGACGGACGGAAAGGTCTACCatcaAAAGTGTTTCAAGTGCAAAGTGTGCCGCAGCACTCTTTTACCGGGGTCTTACACACAGGGAAGCGATGATGGCTCCTTGATCTGCACTCACCACACAACGGACAGCAAAAGTTCTGGTGTTGACCTCAATCAGCAAATTAGATCTACTGAGAATCGGCCCAAATGTGAATTGCAGGCAGGTTATTCTTCTGTGGCTGGATCGGCTATCACCGGCGTCCCTCATTACACTAAGAAAACAGAGTCACGGGACAGACTGGTATGCAAAACACCAGAGCAAAAAGGGAAAGATAGGTGGGAGAGGAGCGGAGAGCTGAAAGACAGAGACTCAACCGTTGGACTGAAGAGCAAGGTAAAGAAGCCAACGCCTCTTCATCTTCCTCCACCCAGTGTTGAAGACATGACTgttgaaggagctgaaaaaGCTGGACCTGCGACAAAGACTCAAGAGGCCTCTGAGCTGTCCTCGCCACGTGGACGAGTGACAGGAGGAAGTAGTCGGCCGGTTCCAGCACCCAGGCGAATGCTAGACTCTTCTGTGGTCCCTGTTCCTGCACCCAGGACCAAAACTGCCCAGCCCACGAGCAGCTCCTCTGCTGCGGGCAGTTCATCCAACCAAAATAAATGTTCACCCAACTCATCTCGCATCACAAGCCCGACCAGTGGTAGCCCTAAAGTGCAAACCAACCATCCATGGATAAGCATCGTCCATCCCGGACCCTGGATGCAACTGCCTCCCGCTCCGCCTCCAGTACCCAGGAGGTCATTGTACAGACCCAGAGTGCCTCCTCCTCCCAATCCCTTTGGAGGGGAGGTGGATGAGGACACACAGGAGGAGGGCTCTAAACCTGAGCCTGCAGACCAAACTAAGCCCTCAGTGGCGGCTATCCATTCAGGGAACGGGGACACGGACGCTAAAAATACTGCCATTAAATCTACACCAGCTAGAGATACTTCAAGTCAAATTGGCTTATCAGATTCGGATGAAACTGGAAATACGGGAGAGTCACCACCGGATGTGGttgtggcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagggccgCATGCCACTTCAGATAAAGTGCAGAGCCATGTTTTACCCAGAAGTCTTTCTGTGCCAGCGATCACCTCTGCTCCTTCTCAAAGTTCCCTTTTGCATTTTGGCTTGACAGAGGCAGATGGATCTGATCAGGGCATGTCATGCCAAAGTAAGCTGGCCTGCAAAGAGAATCCATTTAATGGAAAACCTGCAATGTCCAAATCAAAGACCTTTCAGGCCCTCCCATCTACACGGGCCCCTGCCCCCGGACATGGCTTCCCACTCATCAAGAGGAAGGTGCAGACGGACCAGAATTTGTCCACAGAAGATCTGCAGGTGGAGATAAGAGAACTGGATCAACATCTGGAGGCACTGGAGCAAAGAGGAGTCGAACTGGAGGGGAATCTAAGAGACTGCAAGAATGATAAAGAGGAGGAACAAATGCTAATGGAGTGGTTCTCTCTTGTCCATGAGAGACATGGTCTGgtgggcagacagacagagctggTTTATCTGACAAAGCAGCAGAAGTTagaggagagacaggcagacgTGGAGTACAAGCTCCGATGTCTCCTTAATAAACCAGAGAGCGACTGGAGTCAGGAGGATCGAGGTCGAGAGCAGCAGCTGATGGATGAGCTGGTCGCCATCATCGAACAGAGGAACCAGATCGTCAGCAGCTTGGATCAGGACAGGCAAAGGGAAAGAGAAGAAGATATGCTTTTGGAAGCCATGATGAAGAACAAAGACATTCAGAAGGAAGGACTTAAAGAGCTAAAGAAGTCAAAAGGAAAGTTCAAGCCCACAAAAATGTTTAAGATGCTGAACCATAAAGCAGAGAGCACCAAAGACTCCATGGACAAAAAGAGCTGAAGGACTATCATGACTGCTGAAGCTCTCACAGAAAACCATCTCGTACTTTTGGATGATAAAGATGATAAAAGTGTTGTAGAATATGATCacaatataaatattataatattttggAGCAGCTCGGTAGCATAGATACATTACAAAGAAATATTCTCTCAGTGCATATGTTTCAGTTTTATCAATCTACATTTTCTCTTCCATGGTTCTTTCCTCACCCTGTCTCCTGTATGCACTTAATATTTatgttatttgtatttttattacatACTTGTATTCATATGCAATACATATGTATTTGGGAAAGTTTTGTCTTGTCTATTAAGAAGAATTGTATACTGTGTTATATTAAATCCACTTTTATTTCGAACCATTTTAAGATGCTATTCTACCATACAGAAATGTATGCTCACTGGAAACAGTGAGCCTTTTCGAAAAGAAAGATAATTCAGGGTAGGGAGGTAACGATTACCGGTGTAACGGTAAACCACGATAAAAATGTTGATGATAA

Function

GO:

id name namespace
GO:0030119 AP-type membrane coat adaptor complex cellular_component
GO:0030131 clathrin adaptor complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825693.1 True 3563 mRNA 0.46 17 5063039 5072099

Neighbor

gene id symbol gene type direction distance location
polr2f polr2f,LOC107727050 coding downstream 766 5058168 ~ 5062273 (-)
kdelr3 kdelr3 coding downstream 58575 5000326 ~ 5004464 (-)
LOC120574178 NA coding downstream 90824 4914082 ~ 4972215 (-)
LOC120574181 ccdc134 coding downstream 149483 4904113 ~ 4913556 (-)
LOC120574180 LOC103371177,LOC102309677,LOC102203270,LOC101480034 coding downstream 159744 4899626 ~ 4903295 (-)
LOC120575087 ddx17 coding upstream 11651 5083750 ~ 5093141 (-)
LOC120575080 tmem184b,LOC102777864,LOC101067677 coding upstream 21486 5093585 ~ 5111312 (-)
LOC120575081 csnk1e,LOC101067908 coding upstream 39373 5111472 ~ 5123509 (-)
LOC120575075 LOC103368117 coding upstream 52863 5124962 ~ 5141113 (-)
zmp:0000000896 card10 coding upstream 71012 5143111 ~ 5161937 (-)
G151951 NA non-coding downstream 38947 5013517 ~ 5024092 (-)
G151924 NA non-coding downstream 169721 4869887 ~ 4893318 (-)
G151799 NA non-coding downstream 478879 4583204 ~ 4584160 (-)
G151790 NA non-coding downstream 539465 4518781 ~ 4523574 (-)
G151785 NA non-coding downstream 584160 4477384 ~ 4478879 (-)
G152052 NA non-coding upstream 98205 5170304 ~ 5170652 (-)
G152081 NA non-coding upstream 215759 5287858 ~ 5290361 (-)
G152104 tob2 non-coding upstream 318406 5390505 ~ 5395115 (-)
G152107 NA non-coding upstream 374404 5446503 ~ 5448057 (-)
G152233 ep300 non-coding upstream 436618 5508717 ~ 5509392 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other downstream 297546 4585173 ~ 4765493 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other downstream 598048 4416177 ~ 4464991 (-)
LOC120575464 NA other downstream 695696 4361848 ~ 4367343 (-)
G151344 smarca4 other downstream 1746124 3311727 ~ 3316915 (-)
G151227 LOC103393680 other downstream 2147672 2911326 ~ 2915367 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other upstream 106217 5178316 ~ 5227241 (-)
G152114 rbx1 other upstream 389747 5461846 ~ 5464418 (-)
top3a top3a,LOC102783137 other upstream 477192 5549291 ~ 5567539 (-)
atp5mf atp5j2,LOC102786280 other upstream 502581 5574680 ~ 5613722 (-)
bud31 bud31,LOC106595689 other upstream 508164 5580263 ~ 5582864 (-)

Expression


Co-expression Network