lfng (lfng,LOC106925146)


Basic Information

Item Value
gene id lfng
gene name lfng,LOC106925146
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 18312569 ~ 18319994 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825786.1
AGTTATTTGCGATTAAGCTATGCACCCTGACGGACCTGTCGTTCAtccttttacattttattgagaAAAAATACCATATGGACTTTGCTTTGGGGATTCGTTGCGTCGCTTCATAGTTTTTAGTCATCAAAGTTTAAtcatgttgaaaaataatggAAAGAAGACAGCCATCTCTGTAGCCAGCACAGCATGtatctgcctgctgctgctcctggtTGCTGTGCAGCATCACCGGGTCCAGGTGGACGAGGTGGCGAACGGAGAGAATACCGGGACGCGCTCTCTTCTCCAAGATGCCGCGCAGGAACAGGAGCAGGACGCACAGGCTAAGAAAGGATTCTCGGCGTACTTCACCAAACTGACCCGGGGACGGAGGGAGGTGGAGAAGCCCGCACTCTCCTCCGCGGCCGCCGCTGACCCGCCTCCAGCTGAGGACATCAGCGCGGATGACATCTTCATCGCTGTGAAGACCACCAAGAAGTTCCATCAGTCCAGACTGAACCTGCTCCTGGACACATGGATCTCAAGAAACATGCAACAGACTTACATCTTCACAGATGGAGAGGACGAGgagctaaaaaagaaaattgGGAGTCACGCAGTCAACACCAACTGCTCTGCAGCTCATAGTCGACAAGCTCTGTCTTGCAAGATGGCGGTGGAATATGACAAGTTCATAGAGTCGGGGAAAAAGTGGTTCTGTCACGTAGATGATGACAACTATGTGAATGTTCGGACTCTGGTGAAGCACCTATCGCAGTACCCTCACACCCAGGACATGTACATCGGTAAACCTAGCCTGGACCGGCCCATAGAGGCCACAGAGAGGCTGGGGGACAACAAGATGAAACCAGTCAACTTCTGGTTTGCTACTGGAGGAGCAGGCTTCTGTGTGAGCCGAGGTCTGGCTCTGAAGATGAGCCCATGGGCCAGTGGCGGCCACTTCATGaacacagctgagaagattCGCCTGCCCGACGACTGCACCGTCGGCTACATCATCGAGTCGGTTCTGGGGGTTCCTCTGACCCGCAGCAACCTGTTTCACTCCCACCTGGAGAACCTGCAACAAGTGTCAAGATCTGAGATACACAAGCAGATCACCCTCAGTTATGGGATGTTTGAAAACAAAAGTAACATCATCAATTTGAAAGGGGCTTTTCCTGTGGAGGAGGATCCATCAAGGTTTAAGTCTGTGCACTGTCTCCTGTACCCAGACACCCCATGGTGTCCCCCTCAGGTTGCCTTTTAGGGCGACCGCTCCTTTCTCATCCTCGTCCCCGTCGTGCCTCGGTATCTGAAAGGCTTGCGGGGACCAGTGTTTGGTATTAGACCGCACGGCTGCTGTATTGTTGCTGCAGTTTTGTGCGGTCTTTAATAGTTTTACTGGGCTGCTGTGCGGCCCGCCTCGGGACTATTCCTTCCTGTCTGCAGCCAGGACCTTGCCCCATAATGTTCTGGTGGAGGACCCCAGCTCTCGGCAGGAAGTTGCTTTCAGCGTCAAGCTTCGCAGGCAATCAGTTGAGCTTTGTGATGTATATGTTGCTTGTAAATGTATCTGCAATTCTCATAGAATGTATTGTCATATATTCAAGCCTTTTTGCCAGCTTTACATTCACTGTTTTTAGCTTTTAAAAATGCAAAGCCATACAGGTCTTTTTTAGTAGGCTTTTTGGCTTTTATCGCATATAATTGGCTTTTTCAGGCATGTTTCTTTAGATATTTTAACTCTGATGACTCCGGACAAATGCTCTAATATGAAGATATTGTTGTGCTTTTAAGTTAACAGTGTAATTTCTCCCATAAACTGAGCTGGCAGTAGGCAGATTTCCAAAGGCATCTTTGGGTGACCTAATCTGAGGTATATCAGGACAAAGCACTTTTCcctttttgatatattttggtGAACTGACCTAATTTACGTCCTTTTATTGACATGCCTCAGATTTGCATCCAAactaacaaaaaagaaaaaataacccCTCAAAATCTCAATCTAttcatttttatgtatttaataaCACTCCTTGCATTTGTTACAATCAGGGAAAATAATGAGTGGAAGAGATTTTGATTCAGGGTTACAATCAGCCTTTTGAATTGctttgaaaagtttttttttgttttgtttaaaattgCACAGCTGAGTGTCAAATTATCTGATGTTTGCTCCTGAAAAGACGCTCACCTCAAAAGGTTCAACAGCGAATAATTAGTGACTTTTAGCTTGGATGAAACCGAATTAGCAAAGAAAAATCACATTGAAACATTGGCATCTAAATAATAACCATGTGTGAGCCGAGCCGCAGTCTGTAATAGTTTGCACAAAAGACTGATGAGCTTCTGTTATTATTAACATGAATATTCTGTATTTACACTTAATATTGGCTCGTTACTGTTGAAGCCTGTGAGGTGAGAACTTTACAAGAGCAACATGAGTGTTTCCACATGGAGGTGTTTGTTCCCTCTGTGTCGTCCCTCACCCATATTGGGTTACGCTGTACATTTTGATAACAGTATTGTGTACTGTGCCTTTTTGGCTAAATTAGTAATTGTATAATGTTTAGAATGTAATTTCCACTTTGTGGGTTACATAAGCTTTTAATGACCCGGACATGATATTTGTACTGCTTTGAACTGTGCTAAATGACTGTGGTGTTTATTCTCCAGTATCTGGAGGGTTTGAACGGTTCATTCCCAATACTGGCTTCTCAGGGATTCTGAGCTGATCCTGGTATTAACTACCATTGGACCCACGGTGGGACCtaaaactttgaataaaagtGCATAACCACTGAGAAACTTTA

Function

symbol description
lfng Predicted to enable O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity. Acts upstream of or within fin regeneration; hypochord development; and negative regulation of neuron differentiation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Is expressed in several structures, including blastodisc; central nervous system; germ ring; neural plate; and sensory system. Human ortholog(s) of this gene implicated in spondylocostal dysostosis. Orthologous to human LFNG (LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase).

NR:

description
beta-1,3-N-acetylglucosaminyltransferase lunatic fringe-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055016 hypochord development biological_process
GO:0007389 pattern specification process biological_process
GO:0045665 negative regulation of neuron differentiation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0033829 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K05948 FNG; fringe

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825786.1 True 2807 mRNA 0.45 8 18312569 18319994

Neighbor

gene id symbol gene type direction distance location
snx8a snx8 coding downstream 32193 18268415 ~ 18280376 (-)
tmem184a tmem184a,LOC104945382 coding downstream 293311 17998143 ~ 18019258 (-)
ints1 ints1 coding downstream 331587 17961593 ~ 17980982 (-)
si:dkey-43p13.5 LOC104944070,LOC103356273 coding downstream 360094 17948757 ~ 17952475 (-)
zfand2a zfand2a coding downstream 471609 17836474 ~ 17840960 (-)
rps11 rps11 coding upstream 32466 18352460 ~ 18354987 (-)
LOC120575519 NA coding upstream 32767 18352761 ~ 18352844 (-)
LOC120575518 NA coding upstream 33369 18353363 ~ 18353446 (-)
LOC120575517 NA coding upstream 34088 18354082 ~ 18354165 (-)
map3k14a LOC103374229,LOC104944878 coding upstream 40276 18360270 ~ 18374288 (-)
G156070 NA non-coding downstream 103392 18208897 ~ 18209177 (-)
G156068 NA non-coding downstream 132461 18179839 ~ 18180108 (-)
LOC120574888 NA non-coding downstream 172960 18136090 ~ 18139609 (-)
LOC120574111 NA non-coding downstream 320542 17987780 ~ 17992027 (-)
G156026 NA non-coding downstream 328876 17983482 ~ 17983693 (-)
LOC120574766 NA non-coding upstream 551860 18871854 ~ 18900161 (-)
LOC120574767 NA non-coding upstream 567511 18887505 ~ 18890913 (-)
G156294 NA non-coding upstream 586352 18906346 ~ 18907262 (-)
G156316 stat3,LOC104946400 non-coding upstream 734164 19054158 ~ 19056296 (-)
G156410 NA non-coding upstream 950507 19270501 ~ 19270765 (-)
mrm2 mrm2,LOC102797561 other downstream 48895 18259401 ~ 18263674 (-)
psmg3 psmg3 other downstream 289583 18019945 ~ 18022986 (-)
micall2a micall2,LOC102794725 other downstream 367034 17933568 ~ 17945535 (-)
trnat-cgu NA other downstream 565912 17746586 ~ 17746657 (-)
G155888 hs3st4,LOC104958756,LOC100711185 other downstream 896728 17415525 ~ 17415841 (-)
G156321 NA other upstream 788905 19108899 ~ 19120932 (-)
G156396 NA other upstream 929732 19249726 ~ 19251256 (-)
si:busm1-163l24.3 NA other upstream 1621973 19941967 ~ 19947921 (-)
hexim1 LOC104946860 other upstream 1979030 20299024 ~ 20300946 (-)
atxn7l3a atxn7l3 other upstream 2744766 21064760 ~ 21071507 (-)

Expression


Co-expression Network