fscn2a (LOC104925063,LOC104962304,LOC103373227,LOC101170272)


Basic Information

Item Value
gene id fscn2a
gene name LOC104925063,LOC104962304,LOC103373227,LOC101170272
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14740537 ~ 14748030 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825807.1
AACAGAGAGCAAGTGCCTGTGCAAGCCCTCTGGGGAATGAGAGAAAGTGACGGGAGAAGGAAGGGACACTAGACAATCCATCAAGGGAGATAAGTTGAGCTAATTTACAGCTTGAGATACAGAAAAGGGGAGAAATCaagcattttatttttgcttttcaGTTGTTTCATGCCTGCTTTTCCCCATTACCCTTTCCCTTGTTAGTCCTAAACCTCTTTACTTGCAATCTTAACTTGGGCCTCTTCAAGCATGCCCACAAACGGAATTAACAGGGCCCTGAAGCTACAGTTTGGCCTCATCAACTATGAGAACCGCTACCTGACAGCCGAGGCCTTCGGCTTCAAGGTGAACGCCTCAGGCGTCAGCATGAAGAAGAAACAGATCTGGACCTTAGAGCAGGACGAGCAAGATGGCCAAGTAGTGTTCCTTCGCAGCCACTTGGGACGTTATCTGGCCTCTGACAAAGATGGGAAGATCACATGTGGGGCGGAGAAGCCTGACCCTGACTGCCGTTTCCTCATTGTGCCTCAATCTGATGGTCGTTGGGCACTGCAGTCAGAGCTTTACCTGCGTTACTTTGGAGGATCCGCTGACTACCTATCCTGCTTTGCCCAAGCCATTGGGGAACAAGAGCTGTGGGCCGTCCATTTGGCTTTACATCCGCAGGCCAGCCTGCTCAGTGTGGCACGTAAGCGCTATGCCCATCTGTCTTCCTCAGATGGAGAGATCTCAGTAGACAGCAACATTCCCTGGGGTGTGGACTCCCTGGTCACCTTGGTATACCTCGATGGCAAGTACAGCCTGAAGACCTGTGACAGCCGTTTCCTCAGCAATGATGGCAAACTGGTAAAGGAGAACGCCAATACGACTAGCTTCACACTGGAGCTGAAATCTGGAAAGCTGGCTTTTAAGGACTGTGATGGGAAATATCTGACCCCAGTGGGTCCAACAGGGACACTGCGATCTGGCCGATGTTCCAAGCCTGGAAAAGATGAGCTGTTTGATCTTGAGGAGAGTCATCCACAAGTAGTTTTTCAAGCCGCCAATAAAAGATTTGTCTCGGTCAAACAAGGAGTGAGTATTTCAGCCAATCAGGATGTGGAGACAGACATGGAGACCTTCCAGATGGAGATTGATAAGGAGAGCAAAAAGTCTATGTTCAGGACCAATGGCGGATCCTACTGGACTTTAGTGACTCACGGAGAGATCCAATCCACTGCCACAGAAGTaGAGGTCAATACAATGTTTGACATTGAGTGGCGAGGACACAGGGTGGCACTCAAAGCAagtaatggaaagtatgtttgTACAAAGAAGAATGGGCAGCTCTCAGCAGTCAGCGATACAGTGGGTGATGATGAATTATTCCTGATGAAACTCATCAACCGCCCTATGTTGATTCTTCGTGGAGAGAATGGCTTTGTGTGTCACCACAAGAACTCCAACACTCTGAACGCAAATCGATCTGTCTATGACATTTTCTCATTGATCTTCAACGATGGCGCCTACAATGTAAAAAGTGTCAATGGAAAGTTCTGGTACGTCTCTAGCAGTGGCCTAGTGTGCACAGATGGAGAAAAGCCAGAGGACTTTTTCCTTGAGTTCCTGGAACATGGACGCGTCGCCATCAAGGGGTCTGATGGCAAGTACCTTCGTGGAGACCAGGGAGGTACGCTTATGGGTCATGGTACAACCGTTGATGTATCTTCTCTTTGGGAGTATTGATCCCTTTCAATCAAGTTCCTCAAAGAGGGAGCAAGAAGGCGGGGTGCAGGACCCACTTCTAACAAATGAAGCAGACTGACCGGGTAAAAAATTTCTGCCTGTTTTTATACTAGCTGCCTGTtcccatgtttttcttttagtttttttttttcaagaagaGAACACTTTAGGAAGATATGTTTGGTTTTTATTGTACATATTAAATGTTTTGTCTTTCAAATGACAATGCCAACATCAAACAACACATACATGTGTGAGCACATATAATTTCACAAATACAGAATAAGACAGCGGCGGTCCCAATTGTTTCAGCCACACTTTGTTCAATATAGGTATGGTGACAAACAAATATCTTTGAGGGCAGCCACACTGATAAGTCACTGAACAAAGAGAGTTGCTGTCCTAAGTTGTTGTGATGCTGCCTAAAGGACTAAATGAACATTTAGTCCTTCTGCTGCTGATTTTCACTGACTAAATAGACTATATATCTCCAAAAGCTGAAAAAACCTTTGATGATTTCTCTGTCTATCAAAACTGATACAAATCTGGTAGAGAAGGACACCTCACTCCTGAACATTCACAAATTAACTAAATattaatgaaaaacaaacaaatgatggATCAGTGTGGCTGCATTCTTGGGTTTACTAAAGAAACAAACAGGGATACTCTAAATACAAAATTAACTCTATTTGGTCTAGGTGACTAGACCTATGTCAACTATGTTTGTCAGGATCTTACTTCTGTAACCTCTGTCAACAATCCCACTGCATTTGTTTACAGCTTTTAAATGATTTCAATACTTTGACATGTTCTATAAGAACAGTGTGGTCATTGACGTCACTCTAAGCAATGATAATGCACCACTGTCTTCAAAGACAATGGCTGGTGCCAATGGTGTTTTCGTTTTTCTTAATGGACCATTAACAGCTTCCAGCAcaatatgaaataaatgaagTGGACTGGAGCAAATAGACTATTATCTCAGGCACCTCTGCAATGCTGAGCAATGTATATCCAAAGAGGACTTGCAAACACTGAAATAAGTTTTGTGTAACACATAGAAATACAGAGATCAGACATGTTTAGGAAAAAATTCTATCAGTAGACATTTTATATATCCATATCAGGGACAAGCAATACACCAAAGGGGGAGCACATTTAAAGCATTTGATGGACTATACATCATTTTTAATGTACCAGGTATGAACTCAGAAAGTGCTTCTCTGGTGTTCTGCCTCGGGGCCTTAAACCATACTGAACTCTACATCCCTTTATACACGTTCTCATGTTCAGAGTTGGGTGGTATGATTAGAAAATTTAAAGGATTTAGTTATTACATTAGGCCATTACCACAGTGACATCCCATAAAACATACAGAAGCAAATGTGCTCGAATACAAATCCTAAAATaatgtcagtttttttccaTCTGTTTTCCCAGAGTCAGATGAGAAGATGTAGTGAATTTCATTTGTGAAATGAGTGCTCTGTGCAGCTCTTTGCCCAGTGGTTGTTGGTCAAACCCAGCTCCAATGTGGCAGCAAACTTCAGCTCCTTCAGACAGCATTGGAGAACaaacatgttttactttttacaaAGCAGGAATATATGTCTTCCCTCTGGACAAAACGGCAAACAACTGTATTTCACAAAATGCTGGAGTGTTCCTTTAACTAACCTACCCAACACTGCTTTTGTCGAATGTGATCAGTAGCTTCTAGTTGACCCTTATCCAGCACAACCCTTTTAAGGAGgaacttttttgtattttgatcTCACAGGACTCACTGAATTGATTACTCCTGAAACCCATTAAAGGGCACAAGCTGCCCAGACTTTATTGGCACGGATGTTGGTGTGCAGTACAACCTGAACCTGTATACAATTTATCCTGCAGATTTTTTGTCAGTTATTTCCCAGGAAGATATAAGATCTGAAATAGTTCAAGTGTAATGTCTAAATCAATGGTTTTGTGATGTGTGCAATTTGCAATTTATAGAGAAATTTTAGAAAGCAAGGTCTAAAATGCTTGGTCATCTATGCATCCTGTATCAGCTCTTTAGAGCCTCCAGCTATATTTTAGaatgtatttaatatatatagatGTTTATTGTGTCACTATATTTTCGTTTTCTGATAtgatttttgaaaatgttgaTGGCAATAAAAACTTGACAATA

Function

NR:

description
PREDICTED: fascin-2

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K17455 FSCN2; fascin2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825807.1 True 3907 mRNA 0.42 5 14740537 14748030

Neighbor

gene id symbol gene type direction distance location
LOC120575160 tmem235,LOC104962294,LOC100710065,LOC101469204 coding downstream 10488 14717993 ~ 14730049 (-)
LOC120575183 NA coding downstream 207887 14529438 ~ 14532650 (-)
notum1a notum,LOC104918326 coding downstream 251614 14481337 ~ 14488923 (-)
LOC120575481 myadml2,LOC103373375 coding downstream 261163 14476834 ~ 14479374 (-)
pycr1a LOC103373386,LOC104918329,LOC106533854 coding downstream 264747 14472095 ~ 14475790 (-)
LOC120575176 NA coding upstream 121912 14869942 ~ 14874632 (-)
LOC120575070 map2k6,LOC103373127,LOC100697168,LOC103392800,LOC102787166 coding upstream 188938 14936968 ~ 14950077 (-)
btbd17b LOC103373589,LOC104944234 coding upstream 202234 14950264 ~ 14954273 (-)
ccdc137 ccdc137 coding upstream 216265 14964295 ~ 14969477 (-)
LOC120573908 tspan10 coding upstream 225322 14973352 ~ 14975399 (-)
G154948 LOC104962285,LOC104925065 non-coding downstream 75866 14627750 ~ 14664671 (-)
G154953 cyth1,LOC103392816,LOC101076412 non-coding downstream 93468 14640102 ~ 14647069 (-)
G154952 cyth1,LOC103140955,LOC102194078 non-coding downstream 103735 14633178 ~ 14636802 (-)
LOC120575037 NA non-coding downstream 403463 14330945 ~ 14337074 (-)
G154825 NA non-coding downstream 413601 14325973 ~ 14326936 (-)
G155025 NA non-coding upstream 147349 14895379 ~ 14895624 (-)
G155039 NA non-coding upstream 215203 14963233 ~ 14963846 (-)
G155047 NA non-coding upstream 237104 14985134 ~ 14985364 (-)
G155106 NA non-coding upstream 408399 15156429 ~ 15162435 (-)
G155126 NA non-coding upstream 564050 15312080 ~ 15313592 (-)
LOC120574989 LOC108241285,LOC103373333,LOC106518659 other downstream 196543 14533682 ~ 14543994 (-)
cenpx cenpx other downstream 211384 14526126 ~ 14529153 (-)
LOC120574967 mafg,LOC104918330,LOC108241257,LOC103373400,LOC101487863,LOC106533856 other downstream 269107 14454837 ~ 14471430 (-)
med9 med9 other downstream 683183 14050738 ~ 14057354 (-)
tfap4 tfap4 other downstream 1108701 13589483 ~ 13631836 (-)
LOC120574213 NA other upstream 17704 14765734 ~ 14790778 (-)
LOC120574214 bahcc1,LOC106528540,LOC108241329,LOC107083174 other upstream 47616 14795646 ~ 14828239 (-)
LOC120575102 fam104b,LOC103373210,LOC101470236,LOC107083185,LOC102083140 other upstream 103909 14851939 ~ 14857580 (-)
ush1ga LOC104944226,LOC103373181,LOC103392806,LOC106949104,LOC104925058,LOC103140944 other upstream 131597 14879627 ~ 14889482 (-)
LOC120573849 LOC106675063,LOC102783976,LOC102313472,LOC102290019,LOC102295680 other upstream 254983 15003013 ~ 15008712 (-)

Expression


Co-expression Network