wipi2 (wipi2)


Basic Information

Item Value
gene id wipi2
gene name wipi2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5874742 ~ 5881666 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825814.1
TGCGCAGTAAGGGGGAGCAACAGCCccaatgaaaaacaacaacaatcactACAGCGGGGCTAGGAAAAAAGAGATGGTTCCTTGAAGCTCAACACGTCTGGCCCTTATCACAGTACTTATCCCAGCCAATTTTCTGCTATTTCTAGCTAAGCTTTATATGTCAATGGTGCCGAGCCCATGAACTTGGCCAGTCAAAGTGGGGATGCTGGCGGAAGCCAGCTTCTCTTCGCCAACTTCAACCAGGACAACACGTCCTTAGCTGTTGGCACCAAATCAGGATACAAGTTTTTCTCCCTGTCCTCTGTGGACAAATTGGAGCAGATATATGAATGTACGGATACGGAGGATGTGTGTATTGTGGAGCGTCTGTTCTCCAGCAGCCTGGTGGCCATCGTCAGCCTGAAGGCCCCCAGGAAGCTCAAAGTCTGTCATTTCAAGAAGGGAACCGAGATCTGCAACTACTCCTATTCCAACACTATACTGGCTGTCAAGCTCAACAGACAGAGGCTGATAGTGTGTCTGGAGGAGTCACTTTACATTCACAACATCCGAGACATGAAAGTGCTGCACACTATCAGAGAAACTCCACCCAACCCTTCAGGATTGTGTGCCCTTTCCATCAGCAATGATAACTGTTACCTGGCTTACCCAGGCAGTGCTACGATAGGAGAAGTTCAGGTGTTTGACACAGTCAACCTGcgAGCGGCTAATATGATTCCAGCCCACGACAGCCCATTAGCGGCTCTGGCTTTCGATGCCAGTGGAACCAAACTGGCCACAGCCTCGGAGAAGGGCACAGTCATTCGTGTCTTCTCAATCCCGGAGGGACAGAAGCTCTTTGAGTTTCGAAGAGGAGTCAAGAGGTGTGTTAGCATCTGCTCATTGGCGTTCAGCATGGAAGGCCTGTACCTGTCGGCTTCCAGCAACACAGAGACTGTCCATATCTTCAAATTAGAGACGCAGAAGGAGAAGTATGTgcCAGCAGAGGAGCCCACCACATGGGGAGGGTACCTGGGCAAGGTCCTGATGGCGTCCACAACCTACCTGCCTTCTCAGGTTACGGAAATGTTCACCCAGGGGCGAGCCTTTGCCACTGTGCGTCTGCCCTTCTGCGGACATAAGAACATTTGCGCCTTGGCTGTGATTCAGAAGATTCCCAGGTTGTTGGTGGCAGCATCAGATGGTTACCTGTATCTGTACAACCTGGATCCACAAGAGGGAGGGGAATGCACACTTATGAAGCagcacagGTTAGACGGCAGTGCTGAGCCAGCCAATGAGATTCTTGAGCAGTCTCATGACCGCCCCCTTGTGGCCCAAACCTACAGTGCTGCTGTCACCAAAGGTTACTGCGAAGAGCAGGGCGCCGTGGgaggggcggggctagaagaTGACCTCAACGACTTGCGCTTAGAGGAAGAGAACGAACAACCGCCGCTCATCCTTGAAACTGACTGACTTAACGGACGGCTGTACCCACCAATCAGAGGGCTCCTCTGGTGCTGCTATGAACATGTGACACAAGGGGGGCAGGGGCAGGATCAGAGACAGGGGTGTTTTTTAAAAACGCTCAAAGCGTTCAAGAGCCTGTCTTGTCAGTCTTATCTTTGCGTTTGTCTGTTCGCATACATCTTGACCAtttttcctccctccttccaccACTACCTTTTCCCTCAGTTTGCCCGCGCGGGCCAAACTAACGCTTTGCATGTACATGTGCCAACTGCTAAAAACATGCTCCAATGTGAAAACGAgtatctgtgagtgtgtgtgtgttggacgtttgatttaaaaaaataaaaataaaaaagtagctGTGTCTCCATTTAAGACACACAGACGCAAGCACTGTGTAAACATGAAAGTGATCGTGTAAGTGCCTCTCTGCTCCAGTGTCATGGTTTCTTCTGTTTGAGAGGAGGATCTCTTTGCATTGGCTTAATAAAATCTATTTTCAGTTGTCGGATCTTAA
>XM_039825815.1
TGCGCAGTAAGGGGGAGCAACAGCCccaatgaaaaacaacaacaatcactACAGCGGGGCTAGGAAAAAAGAGATGGTTCCTTGAAGCTCAACACGTCTGGCCCTTATCACAGTACTTATCCCAGCCAATTTTCTGCTATTTCTAGCTAAGCTTTATATGTCAATGGTGCCGAGCCCATGAACTTGGCCAGTCAAAGTGGGGATGCTGGCGGAAGCCAGCTTCTCTTCGCCAACTTCAACCAGGACAACACGTCCTTAGCTGTTGGCACCAAATCAGGATACAAGTTTTTCTCCCTGTCCTCTGTGGACAAATTGGAGCAGATATATGAATGTACGGATACGGAGGATGTGTGTATTGTGGAGCGTCTGTTCTCCAGCAGCCTGGTGGCCATCGTCAGCCTGAAGGCCCCCAGGAAGCTCAAAGTCTGTCATTTCAAGAAGGGAACCGAGATCTGCAACTACTCCTATTCCAACACTATACTGGCTGTCAAGCTCAACAGACAGAGGCTGATAGTGTGTCTGGAGGAGTCACTTTACATTCACAACATCCGAGACATGAAAGTGCTGCACACTATCAGAGAAACTCCACCCAACCCTTCAGGATTGTGTGCCCTTTCCATCAGCAATGATAACTGTTACCTGGCTTACCCAGGCAGTGCTACGATAGGAGAAGTTCAGGTGTTTGACACAGTCAACCTGcgAGCGGCTAATATGATTCCAGCCCACGACAGCCCATTAGCGGCTCTGGCTTTCGATGCCAGTGGAACCAAACTGGCCACAGCCTCGGAGAAGGGCACAGTCATTCGTGTCTTCTCAATCCCGGAGGGACAGAAGCTCTTTGAGTTTCGAAGAGGAGTCAAGAGGTGTGTTAGCATCTGCTCATTGGCGTTCAGCATGGAAGGCCTGTACCTGTCGGCTTCCAGCAACACAGAGACTGTCCATATCTTCAAATTAGAGACGCAGAAGGAGAAgcCAGCAGAGGAGCCCACCACATGGGGAGGGTACCTGGGCAAGGTCCTGATGGCGTCCACAACCTACCTGCCTTCTCAGGTTACGGAAATGTTCACCCAGGGGCGAGCCTTTGCCACTGTGCGTCTGCCCTTCTGCGGACATAAGAACATTTGCGCCTTGGCTGTGATTCAGAAGATTCCCAGGTTGTTGGTGGCAGCATCAGATGGTTACCTGTATCTGTACAACCTGGATCCACAAGAGGGAGGGGAATGCACACTTATGAAGCagcacagGTTAGACGGCAGTGCTGAGCCAGCCAATGAGATTCTTGAGCAGTCTCATGACCGCCCCCTTGTGGCCCAAACCTACAGTGCTGCTGTCACCAAAGGTTACTGCGAAGAGCAGGGCGCCGTGGgaggggcggggctagaagaTGACCTCAACGACTTGCGCTTAGAGGAAGAGAACGAACAACCGCCGCTCATCCTTGAAACTGACTGACTTAACGGACGGCTGTACCCACCAATCAGAGGGCTCCTCTGGTGCTGCTATGAACATGTGACACAAGGGGGGCAGGGGCAGGATCAGAGACAGGGGTGTTTTTTAAAAACGCTCAAAGCGTTCAAGAGCCTGTCTTGTCAGTCTTATCTTTGCGTTTGTCTGTTCGCATACATCTTGACCAtttttcctccctccttccaccACTACCTTTTCCCTCAGTTTGCCCGCGCGGGCCAAACTAACGCTTTGCATGTACATGTGCCAACTGCTAAAAACATGCTCCAATGTGAAAACGAgtatctgtgagtgtgtgtgtgttggacgtttgatttaaaaaaataaaaataaaaaagtagctGTGTCTCCATTTAAGACACACAGACGCAAGCACTGTGTAAACATGAAAGTGATCGTGTAAGTGCCTCTCTGCTCCAGTGTCATGGTTTCTTCTGTTTGAGAGGAGGATCTCTTTGCATTGGCTTAATAAAATCTATTTTCAGTTGTCGGATCTTAA

Function

symbol description
wipi2 Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity and phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in several processes, including autophagy of mitochondrion; autophagy of nucleus; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagosome assembly. Predicted to be located in phagophore assembly site. Predicted to be active in cytosol and phagophore assembly site membrane. Predicted to be extrinsic component of membrane. Orthologous to human WIPI2 (WD repeat domain, phosphoinositide interacting 2).

NR:

description
PREDICTED: WD repeat domain phosphoinositide-interacting protein 2 isoform X1

GO: NA

KEGG:

id description
K17908 WIPI1_2, ATG18; autophagy-related protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825814.1 True 1972 mRNA 0.50 12 5874742 5881666
XM_039825815.1 False 1966 mRNA 0.50 12 5874742 5881666

Neighbor

gene id symbol gene type direction distance location
smurf1 smurf1,LOC102787679,LOC103393300 coding downstream 34096 5821626 ~ 5840646 (-)
rnf216 rnf216,LOC107591749,LOC106595856 coding downstream 56622 5794107 ~ 5818120 (-)
actb2 actb,LOC102799139 coding downstream 144420 5725886 ~ 5730322 (-)
tnrc18 tnrc18 coding downstream 157194 5661861 ~ 5717548 (-)
cbx7a NA coding downstream 333541 5533856 ~ 5541201 (-)
ap5z1 ap5z1 coding upstream 23272 5904938 ~ 5916956 (-)
c1qtnf6a LOC101473735,LOC102300081,LOC102790480,LOC100705049 coding upstream 77526 5959192 ~ 5967183 (-)
il2rb NA coding upstream 94882 5976548 ~ 5986907 (-)
LOC120574102 LOC103393291,LOC103147375,LOC102224681,LOC107672151,LOC105890774,LOC105029658,LOC101072687,LOC107583318 coding upstream 114186 5995852 ~ 6004000 (-)
mpst NA coding upstream 124860 6006526 ~ 6008599 (-)
G152302 NA non-coding downstream 434 5873777 ~ 5874308 (-)
G152298 NA non-coding downstream 82567 5791967 ~ 5792175 (-)
G152280 NA non-coding downstream 91381 5737931 ~ 5783361 (-)
G152270 NA non-coding downstream 213844 5660086 ~ 5660898 (-)
G152256 NA non-coding downstream 268654 5601313 ~ 5606088 (-)
G152329 NA non-coding upstream 67148 5948814 ~ 5949019 (-)
G152330 NA non-coding upstream 67611 5949277 ~ 5949495 (-)
G152362 NA non-coding upstream 127581 6009247 ~ 6010851 (-)
G152400 NA non-coding upstream 228073 6109739 ~ 6109942 (-)
G152403 NA non-coding upstream 230066 6111732 ~ 6111935 (-)
atp5mf atp5j2,LOC102786280 other downstream 261020 5574680 ~ 5613722 (-)
bud31 bud31,LOC106595689 other downstream 291878 5580263 ~ 5582864 (-)
top3a top3a,LOC102783137 other downstream 307203 5549291 ~ 5567539 (-)
G152114 rbx1 other downstream 410324 5461846 ~ 5464418 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other downstream 647501 5178316 ~ 5227241 (-)
LOC120574101 NA other upstream 110271 5991937 ~ 5995189 (-)
G152441 LOC104944083,LOC103371237,LOC107087166,LOC105933549,LOC100701083,LOC101478422 other upstream 300742 6182408 ~ 6228114 (-)
G152567 NA other upstream 838118 6719784 ~ 6720643 (-)
arhgdig NA other upstream 891214 6772880 ~ 6801536 (-)
grin2aa grin2a,LOC102780805 other upstream 1688052 7569718 ~ 7723914 (-)

Expression


Co-expression Network