tom1 (tom1)


Basic Information

Item Value
gene id tom1
gene name tom1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 3617009 ~ 3632601 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825845.1
CGAGCAGCAGCGGCAGTCTGCACTCGGGAGCAGGGAGCGGGGCTTGTCGCTGCTTACGGCTCGGCCCGGGGACGTCGGTGCTTCGCTGGGCCCATCTCTCCGCCCTCAACATGGAGTTTTTAATGGGGAATCCGTTCAGCACGCCGGTGGGGCAGCGTATCGAGAATGCAACCGGCTCCAGCCTGCCGGCAGAAGACTGGGCACTCAACATGGAGATCTGCGACATGATCAACAGCTCCGaggaaggACCCAGAGACGCAATCAGAGCCTTAAAGAAAAGGATTGTGGGGAACAAGAACTTCAAGGAGGTTATGCTGGCGCTCACTGTGCTGGAGACGTGTGTGAAGAACTGCGGCTACAGGTTTCACGTCCTGGTGACGACGCGGGATTTTGTAGAGGGGGTTCTGGTCCGGGCGATCATCCCGAGAAACAACCCTCCATTGGTGCTGCATGACAGAGTGCTCAGCATCGTACAGGCGTGGGCTGATGCATTCCGTAGCTCCCCCGACCTGACGGGCGTGGTGTCCGTGTACGAAGACCTGCGACGGAAGGGACTTGAGTTCCCCATGACAGAGCTGGACGGTTACTCACCCGTCCAAGCCCCCCAAAAGACTTTGTCTGGGAACGGGCCTGCTGTCACTACTCTCCCTGCTGTGCTCCTCTCTTCCAAACCTCCGCTCATCCCACCCCAGACTTCTGAGCTAAAACTGGCCCTAGAGGGAAACAATGCCTTCACTCCCAGCCAGataaAAAAGCTGAAGACAGAGCTGGGTGTGGTGCGAACCAACCTGACTATGATGTCAGACATGATGAGTCAGCTGGATCCCGTCACGGTAAAACAAGCCGACATGGAGCTGCTGGAGCAGTTATACACAGTGTGTAAGGAAATGCAAGACAGGATAGTGAAGATCGTCCCCAGACTCAGTGAGGAGAGGCTGATCGAAGAGTTGCTGGCAGCGAACGATGAGATGAACACCGCCTTCACGCGCTACCACAGGTTTGAAAGACGAATACCAAATGGTCAAAACTCCGCAGAGAAGAATCACACATACGTCAACCTAGCAGACCTGGACTTGACACCAGAGTCCGTCAGCCAATCAGGGATTGCGTCAGTTACCAACGACAGCGCGTACAGCCTCTCAAAAGCTGACAGTTTGTCCAGTCAGATGGCGAGACTTAGTACAAGTGAATTAGACGACCCGTTGTCACAAAACTTCAACGTCTCAACTCAACAAAGACCAAGCGAGCAGAGTGACGGTGCAGTGGACGGCCTGGCTCAGGCTCAGCACAGCAGACTACACAGCGCTCTAACGGACGACAGCCCGGCCTCCACCCGCAGCTCCTCCCCTAAGTTAGATTGGATGATTAAAAGGGGAATGATTCCTATCAACCAGTCCACTGTAATGGATGATATTGAGAAATGGCTGGAGTTGGATGACGAGTATGATGACTTTGAGGATTCAGACGGTGTGACCAGTGAAGAGTTTGACAGGTTTTTGGCAGAAAGAGCGAAAGCAGCCGAGCGTCTGCCATCGGTGAGAGCTTCCCTGCAGGATGCCAACAACTCCGAGTCTTAAGCTACACCAGGAACCTGCCAAACTAACAGCACTCCCCAAGCTCCGGCGCCATCGGCTCACAAATGTAGGGGTTTCTTTTAGACCAACGGAAGATTGGCACATTTGACGTGGGAATTACATCCCATATCTGGGGAAGGACGTCTTAGTTGTGTATACTGCTCTTTACTGCGGAGcaaacttcttctttttttttttttttactgataatAATGCTATTCGATGAAGGGCAGAGGTTTTTACTTGCTGTTGTTATGAGGGTTTGTCCATGTGTGGAATGCAAACATTTGCACATTTTATATGGTTACATTCCTGCtgttagaaaaaaagagagaggatattgttacaaaaaaaacacttttacaacATAGGTTATGTATTATATTGCTgtgatataaatatatattgtaaGACATGACGATGGGTTACAAAAGAAACGTCCCTGTCAAAGAAGCAAACGCTGTTAACTTGTATGTAAGAGAAGCTCGGTTACATTACGTAACAAAATAGTTTGATGCCTCACATCTCTGAACGATGGTTTTTCCATCCAACATTCCCGTGTGAAGATGTTTGTTTAACAGGAAGTCATGACAGACCGCTGTCATCTAATAAACTGAAACTATTAACTGGAA
>XM_039825846.1
GAGCAGCAGCGGCAGTCTGCACTCGGGAGCAGGGAGCGGGGCTTGTCGCTGCTTACGGCTCGGCCCGGGGACGTCGGTGCTTCGCTGGGCCCATCTCTCCGCCCTCAACATGGAGTTTTTAATGGGGAATCCGTTCAGCACGCCGGTGGGGCAGCGTATCGAGAATGCAACCGGCTCCAGCCTGCCGGCAGAAGACTGGGCACTCAACATGGAGATCTGCGACATGATCAACAGCTCCGaggaaggACCCAGAGACGCAATCAGAGCCTTAAAGAAAAGGATTGTGGGGAACAAGAACTTCAAGGAGGTTATGCTGGCGCTCACTGTGCTGGAGACGTGTGTGAAGAACTGCGGCTACAGGTTTCACGTCCTGGTGACGACGCGGGATTTTGTAGAGGGGGTTCTGGTCCGGGCGATCATCCCGAGAAACAACCCTCCATTGGTGCTGCATGACAGAGTGCTCAGCATCGTACAGGCGTGGGCTGATGCATTCCGTAGCTCCCCCGACCTGACGGGCGTGGTGTCCGTGTACGAAGACCTGCGACGGAAGGGACTTGAGTTCCCCATGACAGAGCTGGACGGTTACTCACCCGTCCAAGCCCCCCAAAAGACTTTGTCTGGGAACGGGCCTGCTGTCACTACTCTCCCTGCTGTGCTCCTCTCTTCCAAACCTCCGCTCATCCCACCCCAGACTTCTGAGCTAAAACTGGCCCTAGAGGGAAACAATGCCTTCACTCCCAGCCAGataaAAAAGCTGAAGACAGAGCTGGGTGTGGTGCGAACCAACCTGACTATGATGTCAGACATGATGAGTCAGCTGGATCCCGTCACGGTAAAACAAGCCGACATGGAGCTGCTGGAGCAGTTATACACAGTGTGTAAGGAAATGCAAGACAGGATAGTGAAGATCGTCCCCAGACTCAGTGAGGAGAGGCTGATCGAAGAGTTGCTGGCAGCGAACGATGAGATGAACACCGCCTTCACGCGCTACCACAGGTTTGAAAGACGAATACCAAATGGTCAAAACTCCGCAGAGAAGAATCACACATACGTCAACCTAGCAGACCTGGACTTGACACCAGAGTCCGTCAGCCAATCAGGGATTGCGTCAGTTACCAACGACAGCGCGTACAGCCTCTCAAAAGCTGACAGTTTGTCCAGTCAGATGGCGAGACTTAGTACAAGTGAATTAGACGACCCGTTGTCACAAAACTTCAACGTCTCAACTCAACAAAGACCAAGCGAGCAGAGTGACGGTGCAGTGGACGGCCTGGCTCAGGCTCAGCACAGCAGACTACACAGCGCTCTAACGATTCCTATCAACCAGTCCACTGTAATGGATGATATTGAGAAATGGCTGGAGTTGGATGACGAGTATGATGACTTTGAGGATTCAGACGGTGTGACCAGTGAAGAGTTTGACAGGTTTTTGGCAGAAAGAGCGAAAGCAGCCGAGCGTCTGCCATCGGTGAGAGCTTCCCTGCAGGATGCCAACAACTCCGAGTCTTAAGCTACACCAGGAACCTGCCAAACTAACAGCACTCCCCAAGCTCCGGCGCCATCGGCTCACAAATGTAGGGGTTTCTTTTAGACCAACGGAAGATTGGCACATTTGACGTGGGAATTACATCCCATATCTGGGGAAGGACGTCTTAGTTGTGTATACTGCTCTTTACTGCGGAGcaaacttcttctttttttttttttttactgataatAATGCTATTCGATGAAGGGCAGAGGTTTTTACTTGCTGTTGTTATGAGGGTTTGTCCATGTGTGGAATGCAAACATTTGCACATTTTATATGGTTACATTCCTGCtgttagaaaaaaagagagaggatattgttacaaaaaaaacacttttacaacATAGGTTATGTATTATATTGCTgtgatataaatatatattgtaaGACATGACGATGGGTTACAAAAGAAACGTCCCTGTCAAAGAAGCAAACGCTGTTAACTTGTATGTAAGAGAAGCTCGGTTACATTACGTAACAAAATAGTTTGATGCCTCACATCTCTGAACGATGGTTTTTCCATCCAACATTCCCGTGTGAAGATGTTTGTTTAACAGGAAGTCATGACAGACCGCTGTCATCTAATAAACTGAAACTATTAACTGGAA
>XM_039825848.1
GCGAGCAGCAGCGGCAGTCTGCACTCGGGAGCAGGGAGCGGGGCTTGTCGCTGCTTACGGCTCGGCCCGGGGACGTCGGTGCTTCGCTGGGCCCATCTCTCCGCCCTCAACATGGAGTTTTTAATGGGGAATCCGTTCAGCACGCCGGTGGGGCAGCGTATCGAGAATGCAACCGGCTCCAGCCTGCCGGCAGAAGACTGGGCACTCAACATGGAGATCTGCGACATGATCAACAGCTCCGaggaaggACCCAGAGACGCAATCAGAGCCTTAAAGAAAAGGATTGTGGGGAACAAGAACTTCAAGGAGGTTATGCTGGCGCTCACTGTGCTGGAGACGTGTGTGAAGAACTGCGGCTACAGGTTTCACGTCCTGGTGACGACGCGGGATTTTGTAGAGGGGGTTCTGGTCCGGGCGATCATCCCGAGAAACAACCCTCCATTGGTGCTGCATGACAGAGTGCTCAGCATCGTACAGGCGTGGGCTGATGCATTCCGTAGCTCCCCCGACCTGACGGGCGTGGTGTCCGTGTACGAAGACCTGCGACGGAAGGGACTTGAGTTCCCCATGACAGAGCTGGACGGTTACTCACCCGTCCAAGCCCCCCAAAAGataaAAAAGCTGAAGACAGAGCTGGGTGTGGTGCGAACCAACCTGACTATGATGTCAGACATGATGAGTCAGCTGGATCCCGTCACGGTAAAACAAGCCGACATGGAGCTGCTGGAGCAGTTATACACAGTGTGTAAGGAAATGCAAGACAGGATAGTGAAGATCGTCCCCAGACTCAGTGAGGAGAGGCTGATCGAAGAGTTGCTGGCAGCGAACGATGAGATGAACACCGCCTTCACGCGCTACCACAGGTTTGAAAGACGAATACCAAATGGTCAAAACTCCGCAGAGAAGAATCACACATACGTCAACCTAGCAGACCTGGACTTGACACCAGAGTCCGTCAGCCAATCAGGGATTGCGTCAGTTACCAACGACAGCGCGTACAGCCTCTCAAAAGCTGACAGTTTGTCCAGTCAGATGGCGAGACTTAGTACAAGTGAATTAGACGACCCGTTGTCACAAAACTTCAACGTCTCAACTCAACAAAGACCAAGCGAGCAGAGTGACGGTGCAGTGGACGGCCTGGCTCAGGCTCAGCACAGCAGACTACACAGCGCTCTAACGGACGACAGCCCGGCCTCCACCCGCAGCTCCTCCCCTAAGTTAGATTGGATGATTAAAAGGGGAATGATTCCTATCAACCAGTCCACTGTAATGGATGATATTGAGAAATGGCTGGAGTTGGATGACGAGTATGATGACTTTGAGGATTCAGACGGTGTGACCAGTGAAGAGTTTGACAGGTTTTTGGCAGAAAGAGCGAAAGCAGCCGAGCGTCTGCCATCGGTGAGAGCTTCCCTGCAGGATGCCAACAACTCCGAGTCTTAAGCTACACCAGGAACCTGCCAAACTAACAGCACTCCCCAAGCTCCGGCGCCATCGGCTCACAAATGTAGGGGTTTCTTTTAGACCAACGGAAGATTGGCACATTTGACGTGGGAATTACATCCCATATCTGGGGAAGGACGTCTTAGTTGTGTATACTGCTCTTTACTGCGGAGcaaacttcttctttttttttttttttactgataatAATGCTATTCGATGAAGGGCAGAGGTTTTTACTTGCTGTTGTTATGAGGGTTTGTCCATGTGTGGAATGCAAACATTTGCACATTTTATATGGTTACATTCCTGCtgttagaaaaaaagagagaggatattgttacaaaaaaaacacttttacaacATAGGTTATGTATTATATTGCTgtgatataaatatatattgtaaGACATGACGATGGGTTACAAAAGAAACGTCCCTGTCAAAGAAGCAAACGCTGTTAACTTGTATGTAAGAGAAGCTCGGTTACATTACGTAACAAAATAGTTTGATGCCTCACATCTCTGAACGATGGTTTTTCCATCCAACATTCCCGTGTGAAGATGTTTGTTTAACAGGAAGTCATGACAGACCGCTGTCATCTAATAAACTGAAACTATTAACTGGAA

Function

symbol description
tom1 Predicted to enable clathrin binding activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in endosome and membrane. Orthologous to human TOM1 (target of myb1 membrane trafficking protein).

NR:

description
target of Myb protein 1-like isoform X4

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K12404 GGA; ADP-ribosylation factor-binding protein GGA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825845.1 True 2206 mRNA 0.50 16 3617009 3632600
XM_039825846.1 False 2139 mRNA 0.50 15 3617009 3632599
XM_039825848.1 False 2072 mRNA 0.50 15 3617009 3632601

Neighbor

gene id symbol gene type direction distance location
gcat gcat coding downstream 2165 3596298 ~ 3614844 (-)
mcm5 mcm5,LOC102783740,LOC106927661 coding downstream 22753 3575537 ~ 3594256 (-)
foxred2 foxred2 coding downstream 55202 3549227 ~ 3561807 (-)
ankrd54 ankrd54 coding downstream 67977 3543024 ~ 3549032 (-)
hmgxb4a hmgxb4,LOC102782297 coding downstream 75837 3529466 ~ 3541172 (-)
zgc:171844 LOC103359992,LOC107094641,LOC100711370,LOC102309406,LOC102193574,LOC101465794 coding upstream 10892 3643493 ~ 3656060 (-)
mfsd6l NA coding upstream 28510 3661111 ~ 3666455 (-)
pik3r6b NA coding upstream 37218 3669819 ~ 3689399 (-)
LOC120575475 NA coding upstream 58845 3691446 ~ 3715227 (-)
mchr1b LOC103359996,LOC101467517,LOC102311886,LOC100690541,LOC102197681 coding upstream 337192 3969793 ~ 3972398 (-)
G151515 NA non-coding downstream 94219 3522352 ~ 3522790 (-)
G151399 kri1,LOC102780649 non-coding downstream 236344 3375879 ~ 3380665 (-)
G151398 NA non-coding downstream 237471 3379186 ~ 3379538 (-)
G151376 NA non-coding downstream 289642 3327144 ~ 3327367 (-)
G151375 NA non-coding downstream 294530 3322193 ~ 3322479 (-)
G151561 NA non-coding upstream 331447 3964048 ~ 3964411 (-)
G151615 NA non-coding upstream 422613 4055214 ~ 4112189 (-)
G151633 NA non-coding upstream 450317 4082918 ~ 4083681 (-)
G151639 LOC103360002,LOC100712452,LOC105013158,LOC102214151,LOC101470166,LOC106937022,LOC103143670 non-coding upstream 498203 4130804 ~ 4165498 (-)
G151691 NA non-coding upstream 635729 4268330 ~ 4268654 (-)
G151344 smarca4 other downstream 300094 3311727 ~ 3316915 (-)
G151227 LOC103393680 other downstream 701642 2911326 ~ 2915367 (-)
G151216 LOC106957010,LOC107376217,LOC103393680 other downstream 720666 2873918 ~ 2896343 (-)
G151146 NA other downstream 811598 2399809 ~ 2805411 (-)
farsa farsa other downstream 1455285 2132732 ~ 2161724 (-)
LOC120575464 NA other upstream 729247 4361848 ~ 4367343 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other upstream 783576 4416177 ~ 4464991 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other upstream 952572 4585173 ~ 4765493 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other upstream 1545715 5178316 ~ 5227241 (-)
G152114 rbx1 other upstream 1829245 5461846 ~ 5464418 (-)

Expression


Co-expression Network