gcat (gcat)


Basic Information

Item Value
gene id gcat
gene name gcat
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 3596298 ~ 3614844 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825865.1
GCTACGCCTTCGGGCTTACGTTCTGCCTTCTTGCACATTTGGTTTGACACCTCAAACACGCGCTACTCCACACCGTCATGTCTCTCGGAAAAGTTGCCCGGAGTTTGGTGAAACCAGCCCGGGGTGTCCTGCGGTCCTCGGCGTTGAACCGGAGCTACGCCGCTGTCGCGGAAGCCAGAGCGGTGCTGGAGAGCGAGCTCGACGGTATCCGAGCCGCGGGGACGTGGAAAGCGGAGAGGATCATTACGTCAAAGCAGGGACCTCATATCAACGTGGACGGCAGCCGTAGCAGCATTTTGAATTTCTGTGCCAACAACTACCTGGGACTGTCCAGCCACCCAGAGGTGGTGCAGGCGGGGATAGATGCTCTGAAGTCATATGGTGCTGGGTTGAGCTCTGTCAGATTCATCTGTGGCACACAGGATCTACACAAAAATCTGGAGCAGAAGCTAGCAGAGTTCCATGAGAGGGAGGACTGCATCCTCTATGCTAGCTGTTTTGATGCTAACGCTGGACTGTTTGAGGTTCTGTTGGGCCCGGATGACGCGGTGCTGTCTGATGAGCTAAACCACGCCTCCATCATCGATGGGATCCGACTGTGTCGAGCAAAGAGGCTGCGCTACAAACACATGGACCTCAGCGATCTGGAGAACAAGCTCAAAGAGTCTCAGTCGTCTCGTATGCGCCTGGTGGTGACAGATGGAGTCTTCTCGATGGACGGAGACGTGGCTCCCCTGACGGGAATCTGTGACCTGGCGGAACAGTACGGAGCCATGGTGTTTATAGACGAATGCCACGCCACCGGTTTCCTGGGGCCCCGGGGCAGAGGAACGGACGAACTCCTGGGAGTGATGGACAGAGTTCACATTGTAAACTCCACCCTGGGGAAAGCTCTGGGAGGAGCCGCTGGTGGCTACACGGTTGGCCCTAAGCCTCTCATCGACCTGCTGAGGCAGCGCTCGCGGCCGTACCTGTTCTCCaactccctcccccccccggtGGTGGGCTGTGCCACGCGGGCGGTGGAGCTGCTGCTCGCCTCCAATGAGATTTCACAGAGCATGACGGCCAAAACCATGAGGTTCAGGAACAAGATGACGCAGGCTGGCTTCACCATCGCAGGCTCAGCTCACCCAATCTGCCCTGTGATGCTGGGCGACGCGCGGCTGGCCTCCCTGATGGCCGACGACATGCTGAAGCTAGGAGTGTATGTGATTGGATTCTCCTTCCCAGTCGTACCAAAGGGCCTAGCCAGGATCCGCGTTCAGATTTCGGCCGCCCACACAAACGAAGACATCGACCACTGCGTTGACTCTTTCATCCAGACGGGCAGAAAGCACGGGGTCATCTCCTGAAAAAGGACAAATAAGCAGGAGTCCGAGTACGAGTTACTGAACAACGATGAAGCGCTTGCTCTTACAGATTGTGCCGCCTGTTACTCGAGGCCTATGACTGTCGATGATGGAAATATTAGTTACATTTGTAGGTCAACAGAAGTTAGTTTGCTTAGCTGAATAAAGCACATTTGCCAACA

Function

symbol description
gcat Predicted to enable glycine C-acetyltransferase activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within biosynthetic process and threonine catabolic process. Predicted to be active in mitochondrion. Orthologous to human GCAT (glycine C-acetyltransferase).

NR:

description
2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008890 glycine C-acetyltransferase activity molecular_function

KEGG:

id description
K00639 kbl, GCAT; glycine C-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825865.1 True 1534 mRNA 0.56 9 3596298 3614844

Neighbor

gene id symbol gene type direction distance location
mcm5 mcm5,LOC102783740,LOC106927661 coding downstream 2042 3575537 ~ 3594256 (-)
foxred2 foxred2 coding downstream 34491 3549227 ~ 3561807 (-)
ankrd54 ankrd54 coding downstream 47266 3543024 ~ 3549032 (-)
hmgxb4a hmgxb4,LOC102782297 coding downstream 55126 3529466 ~ 3541172 (-)
si:dkeyp-69e1.8 NA coding downstream 68924 3517924 ~ 3527374 (-)
tom1 tom1 coding upstream 2165 3617009 ~ 3632601 (-)
zgc:171844 LOC103359992,LOC107094641,LOC100711370,LOC102309406,LOC102193574,LOC101465794 coding upstream 28649 3643493 ~ 3656060 (-)
mfsd6l NA coding upstream 46267 3661111 ~ 3666455 (-)
pik3r6b NA coding upstream 54975 3669819 ~ 3689399 (-)
LOC120575475 NA coding upstream 76602 3691446 ~ 3715227 (-)
G151515 NA non-coding downstream 73508 3522352 ~ 3522790 (-)
G151399 kri1,LOC102780649 non-coding downstream 215633 3375879 ~ 3380665 (-)
G151398 NA non-coding downstream 216760 3379186 ~ 3379538 (-)
G151376 NA non-coding downstream 268931 3327144 ~ 3327367 (-)
G151375 NA non-coding downstream 273819 3322193 ~ 3322479 (-)
G151561 NA non-coding upstream 349204 3964048 ~ 3964411 (-)
G151615 NA non-coding upstream 440370 4055214 ~ 4112189 (-)
G151633 NA non-coding upstream 468074 4082918 ~ 4083681 (-)
G151639 LOC103360002,LOC100712452,LOC105013158,LOC102214151,LOC101470166,LOC106937022,LOC103143670 non-coding upstream 515960 4130804 ~ 4165498 (-)
G151691 NA non-coding upstream 653486 4268330 ~ 4268654 (-)
G151344 smarca4 other downstream 279383 3311727 ~ 3316915 (-)
G151227 LOC103393680 other downstream 680931 2911326 ~ 2915367 (-)
G151216 LOC106957010,LOC107376217,LOC103393680 other downstream 699955 2873918 ~ 2896343 (-)
G151146 NA other downstream 790887 2399809 ~ 2805411 (-)
farsa farsa other downstream 1434574 2132732 ~ 2161724 (-)
LOC120575464 NA other upstream 747004 4361848 ~ 4367343 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other upstream 801333 4416177 ~ 4464991 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other upstream 970329 4585173 ~ 4765493 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other upstream 1563472 5178316 ~ 5227241 (-)
G152114 rbx1 other upstream 1847002 5461846 ~ 5464418 (-)

Expression


Co-expression Network