rps11 (rps11)


Basic Information

Item Value
gene id rps11
gene name rps11
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 18352460 ~ 18354987 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826076.1
AGGCAAAGATGGCGGATGCACAAGTACGTTCAGGAAAACGGCGTGACCGAGAGGGCCTATCAGAAACAGCCCACCATCTTCCAGAACAAGAAGCGTGTTCTGGTCGCTGATGGTGGCAAGGAGGTCAAGGAAAAGCTCCCCCGCTACCACAAGAGTGTGGGACTGGGCTTCAAAACCCCTAGAGAGGCTATTGACGGCACTTACATTGACAAGAAATGCCCCTTTACTGGAAATGTCTCCATTCGTGGCCGTATCCTCTCTGGTGTGGTGACCAAAATGAAGATGCAGAGGACCATCGTTATCAGACGTGACTACCTGCATTACATTCGCAAGTACAACCGCTTTGAGAAGAGGCACAAGAACATCTCTGTCCATCTGTCACCTTGCTTCAGAGACGTCACAGTTGGAGACATTGTCACCGTCGGAGAGTGCCGACCGCTCAGCAAGACCGTGCGATTCAACGTCCTCAAAGTGACAAAGGCTGCTGGAGCCAAGAAGCAGTTCCAGAAGTTTTAGGTGTGACTGAACAGGAAGGCTGCTGTTTGCTAACTTGTTTTACTGTCAAATAAAGAACCTTGTTTAAATGgga
>XM_039826077.1
CCTCGCCTTTTGGTAAACGTCATTTCCTGTGGCTCGTAGTCTTCAGTTCGTCGCGCGCATCTTCAGGCCTCTTTACGACTCGGCAGGCAAAGATGGCGGATGCACAAACCGAGAGGGCCTATCAGAAACAGCCCACCATCTTCCAGAACAAGAAGCGTGTTCTGGTCGCTGATGGTGGCAAGGAGGTCAAGGAAAAGCTCCCCCGCTACCACAAGAGTGTGGGACTGGGCTTCAAAACCCCTAGAGAGGCTATTGACGGCACTTACATTGACAAGAAATGCCCCTTTACTGGAAATGTCTCCATTCGTGGCCGTATCCTCTCTGGTGTGGTGACCAAAATGAAGATGCAGAGGACCATCGTTATCAGACGTGACTACCTGCATTACATTCGCAAGTACAACCGCTTTGAGAAGAGGCACAAGAACATCTCTGTCCATCTGTCACCTTGCTTCAGAGACGTCACAGTTGGAGACATTGTCACCGTCGGAGAGTGCCGACCGCTCAGCAAGACCGTGCGATTCAACGTCCTCAAAGTGACAAAGGCTGCTGGAGCCAAGAAGCAGTTCCAGAAGTTTTAGGTGTGACTGAACAGGAAGGCTGCTGTTTGCTAACTTGTTTTACTGTCAAATAAAGAACCTTGTTTAAATGgga

Function

symbol description
rps11 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS11 (ribosomal protein S11).

NR:

description
PREDICTED: 40S ribosomal protein S11

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02949 RP-S11e, RPS11; small subunit ribosomal protein S11e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826076.1 False 589 mRNA 0.50 5 18352460 18354903
XM_039826077.1 True 651 mRNA 0.50 5 18352460 18354987

Neighbor

gene id symbol gene type direction distance location
lfng lfng,LOC106925146 coding downstream 32466 18312569 ~ 18319994 (-)
snx8a snx8 coding downstream 72084 18268415 ~ 18280376 (-)
tmem184a tmem184a,LOC104945382 coding downstream 333202 17998143 ~ 18019258 (-)
ints1 ints1 coding downstream 371478 17961593 ~ 17980982 (-)
si:dkey-43p13.5 LOC104944070,LOC103356273 coding downstream 399985 17948757 ~ 17952475 (-)
map3k14a LOC103374229,LOC104944878 coding upstream 5283 18360270 ~ 18374288 (-)
gosr2 gosr2,LOC102776032 coding upstream 63358 18418345 ~ 18421933 (-)
wnt9b wnt9b coding upstream 76465 18431452 ~ 18437386 (-)
fmnl1a LOC104944896,LOC102200249,LOC102300993,LOC103374236 coding upstream 230738 18585725 ~ 18604084 (-)
LOC120574956 psmc3ip coding upstream 260796 18615783 ~ 18619274 (-)
G156070 NA non-coding downstream 143283 18208897 ~ 18209177 (-)
G156068 NA non-coding downstream 172352 18179839 ~ 18180108 (-)
LOC120574888 NA non-coding downstream 212851 18136090 ~ 18139609 (-)
LOC120574111 NA non-coding downstream 360433 17987780 ~ 17992027 (-)
G156026 NA non-coding downstream 368767 17983482 ~ 17983693 (-)
LOC120574766 NA non-coding upstream 516867 18871854 ~ 18900161 (-)
LOC120574767 NA non-coding upstream 532518 18887505 ~ 18890913 (-)
G156294 NA non-coding upstream 551359 18906346 ~ 18907262 (-)
G156316 stat3,LOC104946400 non-coding upstream 699171 19054158 ~ 19056296 (-)
G156410 NA non-coding upstream 915514 19270501 ~ 19270765 (-)
mrm2 mrm2,LOC102797561 other downstream 88786 18259401 ~ 18263674 (-)
psmg3 psmg3 other downstream 329474 18019945 ~ 18022986 (-)
micall2a micall2,LOC102794725 other downstream 406925 17933568 ~ 17945535 (-)
trnat-cgu NA other downstream 605803 17746586 ~ 17746657 (-)
G155888 hs3st4,LOC104958756,LOC100711185 other downstream 936619 17415525 ~ 17415841 (-)
G156321 NA other upstream 753912 19108899 ~ 19120932 (-)
G156396 NA other upstream 894739 19249726 ~ 19251256 (-)
si:busm1-163l24.3 NA other upstream 1586980 19941967 ~ 19947921 (-)
hexim1 LOC104946860 other upstream 1944037 20299024 ~ 20300946 (-)
atxn7l3a atxn7l3 other upstream 2709773 21064760 ~ 21071507 (-)

Expression


Co-expression Network