hmgxb4a (hmgxb4,LOC102782297)


Basic Information

Item Value
gene id hmgxb4a
gene name hmgxb4,LOC102782297
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 3529466 ~ 3541172 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826125.1
ctgattggctgcaataccAAAGCCCCTCCCCCTACGTCGAGACGCATTGTTGCTTGCCGATAATAAAAGATGGCGACCGGACCCGCGTAAATTGGAGATCCCATAGAGGTCAGTTAAGTCCTGCCTTATGTTGTCAGTGACATACTGTGACAAATAAACGTGTTGACAAAGGAGGAGCCATGGCTTTTGAGGAGATCaagaataaaggaggaatggATGTGGGGATGGATGGAGACAGAGGCCTTGTAGCTGGTCGTAGccagagggagaagaggaggtCGTACAAGGATCTGTtaagggaggaagaggagattgCTGCTCAGGTCCGAAAGTCTTCCAAAAAACGGCCCAAGGATTCCGAATTGTTCATGCTTGGAGGGGACTCgcacaaaaagaagaagaaacatagtGATGACTACCATTACAGAGACCATGATGGTTCAGGTCCACCTCCCCACAAGAAGAAGCACAAGTCAGCCGATcgttcccctcctctctcttccccctcaTCCTCCCACCCGACAGACACTGCGATGGGCCTCCTGCAGGCCATCACCTCTCCACTGGCCACAGGTTCGGACCCCAGCCCCCACCTGCACAAGAAGCCCTCCTACCCACCTTTCTCCTCGCACTCCTCCAAGGACCGCAAACGTGAGagcagcggcggcggcggcggcggaaGCAAAGGGAGCCACTCCTTCCCTCATTCCCGCCCCGTGTCTTCATCGTCGTCATCTTCCTCCAAGAAGCACTCCTCTTCCTCAAAGTCATCACTTTTCCACGGCGGAGCTCCCAAAGAGGAGCCCCTGACGTTACGCGAGGCTGACGGGCTGAAGATGAAGCTCATCATGTCgccagagaaagaggaaggagagagctTCCCGTTCACGCCCCACTCGTCCAAAGGTGgcggaaagaaagagaaggatagAGACCGGGTGCAGCACTCAAAGTCGCCCAAGAAGAAACTACAGCAGAGTCGAGAACCTCTGCCTGTAGTGGGGAAAGAGGTGGAAGTGGAAGGTCATTATGGAGGTGGCATGGGAGACGATAGCTCTTCATCTGGGGCTGAACTGGAGGCCGGTGAGCTGGTTATAGATGATTCATACACACACCTGtcgaaaaagaagaagaagagcaaaaaaagcaagaagaagaaggacaaagaaaaagacagagataaGGACAAAAGTGGAAAGGACAAGAAGCACAGCAAAGGATTTGGAGACTCATCGCGGGTCCACAGCCACTCCCATCCCACTGTCACTCACAGCGCCGTCGGCCCGATGTACGCCATGGGCACGCCCGTCCCTCCACACCACCATCCAGGAAATGAGGGCGTGacggagaagaagaaaaagaaagaggagaaagatcGGGAAAAGCACGAAAAGGAGAAAGATAAGCCCAAGAAGAAGAACACATCAGCATATCAGGTGTTTTGTAGGGAGTACAGGGTCAACATCAATGCTGAACAGCCAGGACTAGTCTTTGGTGAGCTAAGCAAAAAGCTGGGGGAGGTGTGGAAGGCGATGCCAGAGAAAGACAAATTGGTTTGGAGGCAGAAAGCTCAGTATCTGCAGCACAAACAGAACAAAGCCGAGGCCACCACGGTCAAACACAAGAGTGCCACTGAGGGCAAAAGCAAAGTTGTAGGAACGGGAACAGGGGTGGTGTCCCCGAGCAGAGCGCCTAGCACTTTGTCCCTTTCCCCAGCACGAGTCCCAGAAGTTGACCCCATTGATGCAGCAGCTCACCTGCAGCTACTGGGAGAGTCCCTGTCTCTGATTGGGCATCGGCTACAGGAAACAGAGGGGATGGTGGCCGTGTCCGGGAGTCTGTCCGTACTGCTGGACTCCATCTTGTGTGCGCTGGGACCGCTGACCTGTCTCACAGCGCAGATACCACAGTTAAACGGATGTCCTCGAAACGTCCTGTCGAATACGTTGGACAACATTGCCTACATCATGCCAGGGCTGTGAGGAAAGGATAATAATCGAAGTGGAGTATTTTTGCGTCAGACGTCAACAGATTCGACTGGAGTGTTCCTTAATAGGAGTGACTCAGACTTTAATTTAAGCGCCACTTGCTTGGCATCCGAAAATGTGGGATATTTCTAGCCTCAAcgtgtttttacagtgtattttaaaaaaaaaaccttattcttttaattttctaattatattttttaaatcaaacattTTACTGAACACATTGATCTTTCTTGGCATGTCAGCTTAGTTTTATTGTTACTGTACAGTGTGCTGTTGTGTGAATGAGTGAGCACTTGTATGTTCTGTATGTGTGAATTACTTAAGCTGTTAACTGGGTTTGACTTTTAAGCGTCCTGTACGTCTGTTTCTGTATACATCTTTGATTTTTACCGAAATGTCAAGGAACATGCAAGTCATTTGTTCATCATCAACGTAATATATTTGACAGCTGCTTAGTTTTTCTTTTACCGTGTAAAAAGGGCTGTCATGCCTCGCTGTTTTATACATTTGATATTTTACTGTGCATACAGCACATTTAGATTTTGACTGATCTGTAGAAAAGTGATAGAAAACACCTTTAGGTAAAACCTTGTTTTAATCAGGAGCTGTTCAAACAAATCACTGTCAGGCATTTAATGAAATGGCAACATTAAAACTGTTCCCAAATTCa
>XM_039826126.1
TAAACACAGTATTTCTTCTCTTCCTGGTGTTTATAAACAACACATGTTATCACAACAAAGGGGATGAAGATGTGAGCAGAGTTGAATGCATGTTTGCCCCATTATTTTATGCATTTGCGGCGACTGCGGCCTATCTGCGGGTGTCAGCCTCAGGCTTTCCTCGGTCGCTTTCACCGGCTAGCTGAGGGCACGCTCAGCGAGACATGTTCCGAGTGCTGGAAATGTTGGGAAGCCAAGGAGTCCGAGTGAATGGAGaggggGTCAGTTAAGTCCTGCCTTATGTTGTCAGTGACATACTGTGACAAATAAACGTGTTGACAAAGGAGGAGCCATGGCTTTTGAGGAGATCaagaataaaggaggaatggATGTGGGGATGGATGGAGACAGAGGCCTTGTAGCTGGTCGTAGccagagggagaagaggaggtCGTACAAGGATCTGTtaagggaggaagaggagattgCTGCTCAGGTCCGAAAGTCTTCCAAAAAACGGCCCAAGGATTCCGAATTGTTCATGCTTGGAGGGGACTCgcacaaaaagaagaagaaacatagtGATGACTACCATTACAGAGACCATGATGGTTCAGGTCCACCTCCCCACAAGAAGAAGCACAAGTCAGCCGATcgttcccctcctctctcttccccctcaTCCTCCCACCCGACAGACACTGCGATGGGCCTCCTGCAGGCCATCACCTCTCCACTGGCCACAGGTTCGGACCCCAGCCCCCACCTGCACAAGAAGCCCTCCTACCCACCTTTCTCCTCGCACTCCTCCAAGGACCGCAAACGTGAGagcagcggcggcggcggcggcggaaGCAAAGGGAGCCACTCCTTCCCTCATTCCCGCCCCGTGTCTTCATCGTCGTCATCTTCCTCCAAGAAGCACTCCTCTTCCTCAAAGTCATCACTTTTCCACGGCGGAGCTCCCAAAGAGGAGCCCCTGACGTTACGCGAGGCTGACGGGCTGAAGATGAAGCTCATCATGTCgccagagaaagaggaaggagagagctTCCCGTTCACGCCCCACTCGTCCAAAGGTGgcggaaagaaagagaaggatagAGACCGGGTGCAGCACTCAAAGTCGCCCAAGAAGAAACTACAGCAGAGTCGAGAACCTCTGCCTGTAGTGGGGAAAGAGGTGGAAGTGGAAGGTCATTATGGAGGTGGCATGGGAGACGATAGCTCTTCATCTGGGGCTGAACTGGAGGCCGGTGAGCTGGTTATAGATGATTCATACACACACCTGtcgaaaaagaagaagaagagcaaaaaaagcaagaagaagaaggacaaagaaaaagacagagataaGGACAAAAGTGGAAAGGACAAGAAGCACAGCAAAGGATTTGGAGACTCATCGCGGGTCCACAGCCACTCCCATCCCACTGTCACTCACAGCGCCGTCGGCCCGATGTACGCCATGGGCACGCCCGTCCCTCCACACCACCATCCAGGAAATGAGGGCGTGacggagaagaagaaaaagaaagaggagaaagatcGGGAAAAGCACGAAAAGGAGAAAGATAAGCCCAAGAAGAAGAACACATCAGCATATCAGGTGTTTTGTAGGGAGTACAGGGTCAACATCAATGCTGAACAGCCAGGACTAGTCTTTGGTGAGCTAAGCAAAAAGCTGGGGGAGGTGTGGAAGGCGATGCCAGAGAAAGACAAATTGGTTTGGAGGCAGAAAGCTCAGTATCTGCAGCACAAACAGAACAAAGCCGAGGCCACCACGGTCAAACACAAGAGTGCCACTGAGGGCAAAAGCAAAGTTGTAGGAACGGGAACAGGGGTGGTGTCCCCGAGCAGAGCGCCTAGCACTTTGTCCCTTTCCCCAGCACGAGTCCCAGAAGTTGACCCCATTGATGCAGCAGCTCACCTGCAGCTACTGGGAGAGTCCCTGTCTCTGATTGGGCATCGGCTACAGGAAACAGAGGGGATGGTGGCCGTGTCCGGGAGTCTGTCCGTACTGCTGGACTCCATCTTGTGTGCGCTGGGACCGCTGACCTGTCTCACAGCGCAGATACCACAGTTAAACGGATGTCCTCGAAACGTCCTGTCGAATACGTTGGACAACATTGCCTACATCATGCCAGGGCTGTGAGGAAAGGATAATAATCGAAGTGGAGTATTTTTGCGTCAGACGTCAACAGATTCGACTGGAGTGTTCCTTAATAGGAGTGACTCAGACTTTAATTTAAGCGCCACTTGCTTGGCATCCGAAAATGTGGGATATTTCTAGCCTCAAcgtgtttttacagtgtattttaaaaaaaaaaccttattcttttaattttctaattatattttttaaatcaaacattTTACTGAACACATTGATCTTTCTTGGCATGTCAGCTTAGTTTTATTGTTACTGTACAGTGTGCTGTTGTGTGAATGAGTGAGCACTTGTATGTTCTGTATGTGTGAATTACTTAAGCTGTTAACTGGGTTTGACTTTTAAGCGTCCTGTACGTCTGTTTCTGTATACATCTTTGATTTTTACCGAAATGTCAAGGAACATGCAAGTCATTTGTTCATCATCAACGTAATATATTTGACAGCTGCTTAGTTTTTCTTTTACCGTGTAAAAAGGGCTGTCATGCCTCGCTGTTTTATACATTTGATATTTTACTGTGCATACAGCACATTTAGATTTTGACTGATCTGTAGAAAAGTGATAGAAAACACCTTTAGGTAAAACCTTGTTTTAATCAGGAGCTGTTCAAACAAATCACTGTCAGGCATTTAATGAAATGGCAACATTAAAACTGTTCCCAAATTCa

Function

symbol description
hmgxb4 Enables identical protein binding activity. Predicted to be involved in negative regulation of Wnt signaling pathway. Part of NURF complex.

NR:

description
HMG box-containing protein 4-like

GO: NA

KEGG:

id description
K11298 HMG2L1; high mobility group protein 2-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826125.1 False 2664 mRNA 0.49 13 3529466 3541172
XM_039826126.1 True 2816 mRNA 0.49 13 3529466 3541050

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-69e1.8 NA coding downstream 2092 3517924 ~ 3527374 (-)
s1pr5a s1pr5,LOC103393734,LOC104952115 coding downstream 122224 3403000 ~ 3407242 (-)
rtbdn rtbdn,LOC103364965 coding downstream 387756 3120685 ~ 3141710 (-)
hook2 LOC103364969 coding downstream 494454 3008089 ~ 3035012 (-)
trir csgr03h19orf43,clg4h19orf43,LOC103154935,LOC107087651,LOC103376077,LOC102224489 coding downstream 526074 2999650 ~ 3003392 (-)
ankrd54 ankrd54 coding upstream 1852 3543024 ~ 3549032 (-)
foxred2 foxred2 coding upstream 8055 3549227 ~ 3561807 (-)
mcm5 mcm5,LOC102783740,LOC106927661 coding upstream 34365 3575537 ~ 3594256 (-)
gcat gcat coding upstream 55126 3596298 ~ 3614844 (-)
tom1 tom1 coding upstream 75837 3617009 ~ 3632601 (-)
G151515 NA non-coding downstream 6676 3522352 ~ 3522790 (-)
G151399 kri1,LOC102780649 non-coding downstream 148801 3375879 ~ 3380665 (-)
G151398 NA non-coding downstream 149928 3379186 ~ 3379538 (-)
G151376 NA non-coding downstream 202099 3327144 ~ 3327367 (-)
G151375 NA non-coding downstream 206987 3322193 ~ 3322479 (-)
G151521 NA non-coding upstream 67984 3609156 ~ 3651267 (-)
G151561 NA non-coding upstream 422876 3964048 ~ 3964411 (-)
G151615 NA non-coding upstream 514042 4055214 ~ 4112189 (-)
G151633 NA non-coding upstream 541746 4082918 ~ 4083681 (-)
G151639 LOC103360002,LOC100712452,LOC105013158,LOC102214151,LOC101470166,LOC106937022,LOC103143670 non-coding upstream 589632 4130804 ~ 4165498 (-)
G151344 smarca4 other downstream 212551 3311727 ~ 3316915 (-)
G151227 LOC103393680 other downstream 614099 2911326 ~ 2915367 (-)
G151216 LOC106957010,LOC107376217,LOC103393680 other downstream 633123 2873918 ~ 2896343 (-)
G151146 NA other downstream 724055 2399809 ~ 2805411 (-)
farsa farsa other downstream 1367742 2132732 ~ 2161724 (-)
LOC120575464 NA other upstream 820676 4361848 ~ 4367343 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other upstream 875005 4416177 ~ 4464991 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other upstream 1044001 4585173 ~ 4765493 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other upstream 1637144 5178316 ~ 5227241 (-)
G152114 rbx1 other upstream 1920674 5461846 ~ 5464418 (-)

Expression


Co-expression Network