LOC120575421 (LOC106675350)


Basic Information

Item Value
gene id LOC120575421
gene name LOC106675350
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 1461342 ~ 1465308 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826208.1
AGACAGCAGCATTGGTGATTTATATAGAGAGTCTGCATGTCAATCATCATCTGTTCCAACCACATCAGATGACTTTGTACCCTTGATTTCTGAGCCTGCTGCACGGCCTATTACAGATGAAGATAACATGGAAATGTCCCCTGAATTCTGTGATCTTTTTCTGAGAAACGTTTCACAATTCTACTTAAAATTGCAGGGTCAGTTTCTACTGCCTGCTTCAACCATACAGAACATTGTGGAGGAAATGCAGAACATACATGAGTTGGGACAGACATACATTTTGGGTAAACTTGCATCACTATTAAAAGATGACACATCATTATCAGAGGAGGACATCAACAAAGTCTGCGAGTCTGTCAAAAGCTATGATCTGTTTTCTGCATGTCATACCGGGCCATTGAGGACAGTGTACTCCAGAGCTCAGACCTTTAAAAAAGCCTTCAACTATGTGGAaccaaagaaaatatttttaggGAGAGATGAAAACAGAAAAGATAGGTTTGCCTATTATGTGCCTTTAAGAGAGACTTTGAGATGTCTGCTAGAGTCTGATCTGTGGCAGAAATCAGAAGAGCCCTCTACTGAGCCTCCTGCTGATGTTCTGTGTGACATAAGTGATAGTAAGCTGTTTAAATCAAATGATTTTTTTGGTCAAAACCCATCATGCCTCAAGCTAGTACTCTACCAGGATGCCTTTGAAGTCGTTAACCCTTTAGGCTCTGCAAGGACAAAACACAAGGTATTAGCTGTATATGCATCAGTGGCAAACTTGCCACTTCATGTACGCTCAGACACAGACCACATGTCTCTTGTCTTACTGTGCAGGGAGAAAGATTTTAAAGAGTTTGGTCATGCTAATGTGTTCTCTGAATTACTAACAGACTTGAAAGAATTGGAGGACAGTGGGATTGTTGCATCAGATGAAACTAGAGTCAAAGGAACTTTGTTTTGCATCGCTGGTGATAATCTGGGTTCTCACTGTATTGGTGGCTTCACTGAAAATTTTAGTTCTTCAAAGTACTTCTGCAGGTACTGCCTGATAACGAAATCTGAATTTCAGGGTGCTGACCCAAATCTGTGTGGACCAGAACGTACCAAAGAGAACTACAACTCTGCTGTTGATCGCCTCCAGATTGACAATACACCAGACGTCGAAGGAGTGAagttcagACATCTCGGAAATGGGGGACAGCATAAGAAGTTCCATTACTAAGGTGCTGCCGGACCTGTCTGCCTCAATCCTTGAAATTGTACTGGAGGCACTACAATCATTAGGAGTGGAGACATCTGAGGACTTGCAGTTCATCAGTGAGACTGATCTGAACTCTGTCCTGAGACCAGTTCAGGCAAGAAAACTGCTGGCTGCCTGGAAACAAACCACACCAAATACGGACATTTCAAGCCAGGCCAGCCTATCGTCTCCATCTTCTTGCTCCTCATTTTCTGCCTCCCCCTCACCCAGTCCAATATATTCTCTAGACTGGGTAGATAAATTTAGAATTCCATGTGAAGATTTTCCAGAAGACTTGATCCAGTGtcttcagagagagaaaagaccaAAGCCTCGATTGCGGAGGGAGATGATCCGCATCATTG
>XR_005641989.1
agtttgtgtgatCGCTGTTGATTGGCTGCTGGTAAACTGTGTACAGACGTTTTACGTTCGAATTGCagagaaaaaatgttttctggtAGCAACATTGTGCAGTATGAGCGAACCATTTCACCCAAAAAAGGGGAAGCAAGGCAAGACGTGGCTGCAGCGGTCTGCAGACGTGACTTCTGATCAAACCTCCTCCTAAAGAAACAAAGAGCGACATTACATTGCGGGATGACGTCACCTGAAAATGACGCTGCTGAGCTGTGTGCCgcgcgctttttttttttcttgcaggaGACTTGTTGGCTTCGCAAACGGACGCAGTTTTGAACTTGTATTAGCGCCATTTTTAGCTGCTTGGACCACAGCATCTTCGGAATTTGTAGACATCCTGGCAGCTTACAATTAATTCGAGGTGAGGGTGCTGACCCAAATCTGTGTGGACCAGAACGTACCAAAGAGAACTACAACTCTGCTGTTGATCGCCTCCAGATTGACAATACACCAGACGTCGAAGGAGTGAagttcagACATCTCGGAAATGGGGGACAGCATAAGAAGTTCCATTACTAAGGTGCTGCCGGACCTGTCTGCCTCAATCCTTGAAATTGTACTGGAGGCACTACAATCATTAGGAGTGGAGACATCTGAGGACTTGCAGTTCATCAGTGAGACTGATCTGAACTCTGTCCTGAGACCAGTTCAGGCAAGAAAACTGCTGGCTGCCTGGAAACAAACCACACCAAATACGGACATTTCAAGCCAGGCCAGCCTATCGTCTCCATCTTCTTGCTCCTCATTTTCTGCCTCCCCCTCACCCAGTCCAATATATTCTCTAGACTGGGTAGATAAATTTAGAATTCCATGTGAAGATTTTCCAGAAGACTTGATCCAGTGtcttcagagagagaaaagaccaAAGCCTCGATTGCGGAGGGAGATGATCCGCATCATTG
>XR_005641990.1
agtttgtgtgatCGCTGTTGATTGGCTGCTGGTAAACTGTGTACAGACGTTTTACGTTCGAATTGCagagaaaaaatgttttctggtAGCAACATTGTGCAGTATGAGCGAACCATTTCACCCAAAAAAGGGGAAGCAAGGCAAGACGTGGCTGCAGCGGTCTGCAGACGTGACTTCTGATCAAACCTCCTCCTAAAGAAACAAAGAGCGACATTACATTGCGGGATGACGTCACCTGAAAATGACGCTGCTGAGCTGTGTGCCgcgcgctttttttttttcttgcaggaGACTTGTTGGCTTCGCAAACGGACGCAGTTTTGAACTTGTATTAGCGCCATTTTTAGCTGCTTGGACCACAGCATCTTCGGAATTTGTAGACATCCTGGCAGCTTACAATTAATTCGAGGGTGCTGACCCAAATCTGTGTGGACCAGAACGTACCAAAGAGAACTACAACTCTGCTGTTGATCGCCTCCAGATTGACAATACACCAGACGTCGAAGGAGTGAagttcagACATCTCGGAAATGGGGGACAGCATAAGAAGTTCCATTACTAAGGTGCTGCCGGACCTGTCTGCCTCAATCCTTGAAATTGTACTGGAGGCACTACAATCATTAGGAGTGGAGACATCTGAGGACTTGCAGTTCATCAGTGAGACTGATCTGAACTCTGTCCTGAGACCAGTTCAGGCAAGAAAACTGCTGGCTGCCTGGAAACAAACCACACCAAATACGGACATTTCAAGCCAGGCCAGCCTATCGTCTCCATCTTCTTGCTCCTCATTTTCTGCCTCCCCCTCACCCAGTCCAATATATTCTCTAGACTGGGTAGATAAATTTAGAATTCCATGTGAAGATTTTCCAGAAGACTTGATCCAGTGtcttcagagagagaaaagaccaAAGCCTCGATTGCGGAGGGAGATGATCCGCATCATTG

Function

NR:

description
uncharacterized protein LOC106675350

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826208.1 True 1596 mRNA 0.43 3 1461342 1464291
XR_005641989.1 False 950 transcript 0.47 4 1461342 1465308
XR_005641990.1 False 945 transcript 0.47 4 1461342 1465308

Neighbor

gene id symbol gene type direction distance location
LOC120575499 NA coding downstream 16019 1429165 ~ 1445323 (-)
LOC120573831 hspa6,LOC100700083 coding downstream 64874 1392492 ~ 1396468 (-)
taok2a LOC103363962 coding downstream 77614 1341826 ~ 1383728 (-)
cdipt cdipt,LOC103363963 coding downstream 126916 1325679 ~ 1334426 (-)
LOC120574280 NA coding downstream 159051 1298376 ~ 1302291 (-)
LOC120574716 LOC102301616,LOC103363960,LOC100701445 coding upstream 35464 1500772 ~ 1509112 (-)
LOC120573930 LOC103363959,LOC101479828,LOC102300806,LOC102197709 coding upstream 55078 1520386 ~ 1543410 (-)
LOC120574288 LOC108233705,LOC103393603 coding upstream 155366 1620674 ~ 1647069 (-)
LOC120574768 LOC103358687,LOC104930242 coding upstream 539568 2004876 ~ 2058639 (-)
ilf3b ilf3,LOC102795819 coding upstream 699412 2164720 ~ 2209257 (-)
G150756 NA non-coding downstream 14155 1446673 ~ 1447187 (-)
G150679 NA non-coding downstream 119608 1235192 ~ 1341734 (-)
G150706 NA non-coding downstream 214112 1244928 ~ 1247230 (-)
G150684 NA non-coding downstream 242262 1218334 ~ 1219080 (-)
G150702 NA non-coding downstream 257514 1203506 ~ 1203828 (-)
G150763 NA non-coding upstream 5522 1470830 ~ 1471233 (-)
G150764 NA non-coding upstream 16435 1481743 ~ 1481973 (-)
G150765 NA non-coding upstream 20294 1485602 ~ 1488314 (-)
G150775 NA non-coding upstream 54382 1519690 ~ 1519906 (-)
G150776 NA non-coding upstream 54650 1519958 ~ 1520279 (-)
LOC120575422 LOC106675350 other downstream 361 1456747 ~ 1460981 (-)
LOC120573832 maz,LOC101481851,LOC103375157,LOC102304652,LOC101067998,LOC105024369,LOC102195162 other downstream 139309 1302340 ~ 1322033 (-)
G150705 NA other downstream 221352 1238242 ~ 1239990 (-)
sh2b1 LOC102305267,LOC103374915 other downstream 247776 1153429 ~ 1213566 (-)
G150694 NA other downstream 287319 1170045 ~ 1174023 (-)
LOC120574289 NA other upstream 126381 1591689 ~ 1739925 (-)
LOC120574287 col1,LOC108233705,LOC103393603,LOC106536191 other upstream 140907 1606215 ~ 1620471 (-)
G150856 NA other upstream 258814 1724122 ~ 1739481 (-)
LOC120573867 LOC108236047,LOC107376309,LOC101475947,LOC100695382,LOC106520692,LOC105918010 other upstream 350757 1816065 ~ 1822128 (-)
LOC120573864 NA other upstream 380432 1845740 ~ 1872092 (-)

Expression


Co-expression Network