LOC120575422 (LOC106675350)


Basic Information

Item Value
gene id LOC120575422
gene name LOC106675350
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 1456747 ~ 1460981 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826209.1
TTCTCAGTGAACAGACAAGCTTCAGTCATGAAGAAGTAAAAACTCTAATGAAATGCACTTACTACTCTCAGCGCAAAGCAATAAATAGCGGATCAGACATGCAAACCATCATAGAAGAGTGGCCTTTTTTGTTTCAGGCGATTGGAATGACAGTCCACTTTGAAGAACTTACTGGGGTACCGCTGAAAGAGACTTTTCTCACCAGTCTGGAAAAGAAGGGAAAACGGCTTCTGGactttctgaaaaacacttGTGCAGACAAGAGCAAGCGTGTCTTGGAGGCTGTCATAAAGCTTCGAATGCAGAGGGGACAGCTGAAGGGCTGCTCAGAAGACGTGAAAGATATGAtgctcctccttctctcctatTTCGATGAAAAAGAGGAGACCCTCTTCCACTATGTTGATGAAACATGTCTGGCAAAAGAAGTCCATGTGGAAAGCCTGCCTGTGACACCATGTATCATTGTTTGTGGATCCTCCTGCTTTGCATCGAGACTGTTCATGCTCAGCATTGACCACAAAGTCGTGAATGACCAAATAACTGACTTCATCTCTGCAATCTGTCTGATGCTTGGTAGCTACTACTGCCTGAACATCCACTATCCACTGGAACTTGGCTCCACACTTGAATTCCTTCAGAGGTGTTTCTTCAACATTAACCCAGAGAAGGgaacaaaagttgaaaaaactAAGAAGAAGACACTGCATGTGAACCCAAGAGTACTCACCCTCATCGCCGATCTCTCTGATCACGAGTGGCGAGAGACCGTTTAAAGACATTTTGAACAGATCGTTACAGTCAGCTTAACTGTACCTTGACTGGGAACTACTGTGTTTGTTTTCAGTTATCCCAGCTGATATTGAGTACTCTTACCTGATTTCTGTTATCACAGGCATGCTTTTCAGAGGTTTTGATC
>XR_005641991.1
TTCTCAGTGAACAGACAAGCTTCAGTCATGAAGAAGTAAAAACTCTAATGAAATGCACTTACTACTCTCAGCGCAAAGCAATAAATAGCGGATCAGACATGCAAACCATCATAGAAGAGTGGCCTTTTTTGTTTCAGGCGATTGGAATGACAGTCCACTTTGAAGAACTTACTGGGGTACCGCTGAAAGAGACTTTTCTCACCAGTCTGGAAAAGAAGGGAAAACGGCTTCTGGactttctgaaaaacacttGTGCAGACAAGAGCAAGCGTGTCTTGGAGGCTGTCATAAAGCTTCGAATGCAGAGGGGACAGCTGAAGGGCTGCTCAGAAGACGTGAAAGATATGAtgctcctccttctctcctatTTCGATGAAAAAGAGGAGACCCTCTTCCACTATGTTGATGAAACATGTCTGGCAAAAGAAGTCCATGTGGAAAGCCTGCCTGTGACACCATGTATCATTGTTTGTGGATCCTCCTGCTTTGCATCGAGACTGTTCATGCTCAGCATTGACCACAAAGTCGTGAATGACCAAATAACTGACTTCATCTCTGCAATCTGTCTGATGCTTGGTAGCTACTACTGCCTGAACATCCACTATCCACTGGAACTTGGCTCCACACTTGAATTCCTTCAGAGACACTGAATTTGAGCAGAAACCATAAGGATACTCAAAGGACCTGTGACTCTCAGGAAATGCATCAAATGAGAGTGACAGGTGAAACAGTTTCAAGACAATGGCAGGAAAAGCATGCTGAAGATTGAATCAAACCTTGGCTGGAAATATTTGAAGGGATCTAGCCAGTCCTCAATGAAAGCTTCGTTGCCCCCCTGTGAGTCTTCTGGCAGAAATGATGGCGCCTGTATTCTTTGGTTTCCCTAAACATCACACCCTGTTTATACGAGGCTCTTCAATTAAGTCTGCACCCAAAGATTCAATAAGAGAGGGGATCCTGCCAGTCCAAAGTGAACTCCTGATGGACATTGAAGTACTCCTGCAGAGC
>XR_005641992.1
aagggtgGTGACACAGCTAAGACCCGAGAGTCTCTTTCAAGACACTGAATTTGAGCAGAAACCATAAGGATACTCAAAGGACCTGTGACTCTCAGGAAATGCATCAAATGAGAGTGACAGGTGAAACAGTTTCAAGACAATGGCAGGAAAAGCATGCTGAAGATTGAATCAAACCTTGGCTGGAAATATTTGAAGGGATCTAGCCAGTCCTCAATGAAAGCTTCGTTGCCCCCCTGTGAGTCTTCTGGCAGAAATGATGGCGCCTGTATTCTTTGGTTTCCCTAAACATCACACCCTGTTTATACGAGGCTCTTCAATTAAGTCTGCACCCAAAGATTCAATAAGAGAGGGGATCCTGCCAGTCCAAAGTGAACTCCTGATGGACATTGAAGTACTCCTGCAGAGC

Function

NR:

description
uncharacterized protein LOC106675350

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826209.1 False 919 mRNA 0.44 3 1459828 1460981
XR_005641991.1 True 1008 transcript 0.45 6 1456747 1460981
XR_005641992.1 False 406 transcript 0.45 5 1456747 1458866

Neighbor

gene id symbol gene type direction distance location
LOC120575499 NA coding downstream 11424 1429165 ~ 1445323 (-)
LOC120573831 hspa6,LOC100700083 coding downstream 60279 1392492 ~ 1396468 (-)
taok2a LOC103363962 coding downstream 73019 1341826 ~ 1383728 (-)
cdipt cdipt,LOC103363963 coding downstream 122321 1325679 ~ 1334426 (-)
LOC120574280 NA coding downstream 154456 1298376 ~ 1302291 (-)
LOC120574716 LOC102301616,LOC103363960,LOC100701445 coding upstream 39791 1500772 ~ 1509112 (-)
LOC120573930 LOC103363959,LOC101479828,LOC102300806,LOC102197709 coding upstream 59405 1520386 ~ 1543410 (-)
LOC120574288 LOC108233705,LOC103393603 coding upstream 159693 1620674 ~ 1647069 (-)
LOC120574768 LOC103358687,LOC104930242 coding upstream 543895 2004876 ~ 2058639 (-)
ilf3b ilf3,LOC102795819 coding upstream 703739 2164720 ~ 2209257 (-)
G150756 NA non-coding downstream 9560 1446673 ~ 1447187 (-)
G150679 NA non-coding downstream 115013 1235192 ~ 1341734 (-)
G150706 NA non-coding downstream 209517 1244928 ~ 1247230 (-)
G150684 NA non-coding downstream 237667 1218334 ~ 1219080 (-)
G150702 NA non-coding downstream 252919 1203506 ~ 1203828 (-)
G150763 NA non-coding upstream 9849 1470830 ~ 1471233 (-)
G150764 NA non-coding upstream 20762 1481743 ~ 1481973 (-)
G150765 NA non-coding upstream 24621 1485602 ~ 1488314 (-)
G150775 NA non-coding upstream 58709 1519690 ~ 1519906 (-)
G150776 NA non-coding upstream 58977 1519958 ~ 1520279 (-)
LOC120573832 maz,LOC101481851,LOC103375157,LOC102304652,LOC101067998,LOC105024369,LOC102195162 other downstream 134714 1302340 ~ 1322033 (-)
G150705 NA other downstream 216757 1238242 ~ 1239990 (-)
sh2b1 LOC102305267,LOC103374915 other downstream 243181 1153429 ~ 1213566 (-)
G150694 NA other downstream 282724 1170045 ~ 1174023 (-)
G150515 NA other downstream 433185 1022036 ~ 1023562 (-)
LOC120575421 LOC106675350 other upstream 361 1461342 ~ 1465308 (-)
LOC120574289 NA other upstream 130708 1591689 ~ 1739925 (-)
LOC120574287 col1,LOC108233705,LOC103393603,LOC106536191 other upstream 145234 1606215 ~ 1620471 (-)
G150856 NA other upstream 263141 1724122 ~ 1739481 (-)
LOC120573867 LOC108236047,LOC107376309,LOC101475947,LOC100695382,LOC106520692,LOC105918010 other upstream 355084 1816065 ~ 1822128 (-)

Expression


Co-expression Network