LOC120575446 (LOC104960164)


Basic Information

Item Value
gene id LOC120575446
gene name LOC104960164
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13860150 ~ 13863534 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826241.1
AGCGGAAGTTACGTGTCCACCTGGGCGACACTTACaactcatttgtttatttatgtagctagctagctgtcgaTAGAAATGTGAGTTTATGTGTGTATGACTACATCATAGCTATTTCATCATGGTACGTGAACTTATTTAAACACCAATTGATCGTCGACAAGAGATTAACAGCCAAACTCACAGAGTCCCTCTGGAGTGAGAGACCATGGGCCGGTTGGATGATGCCGCCAAACACAAAGTGGTGGAGCTGCGGAAGGCGGGTCTGAGTTTCCGTAAGATCAAAGCTGTGCTGGAGCTGGAGAACATCAAGGTGTCTGCCCAGGCCATCTACCTGTTCCTGAGGGAGTATCAAGGGAGGCCGCCAGGGAGGGTTAGACCTGTGGAGGCTGGAAGCAGCACATCAACCGCACAGGTGCAGCCTCAAGTTGGAGCAACACAAGACAGCTGGAGTAACATGCGTCTCCAAAATCTTCTGCGGGAGGCATCTCACCATGCTGGCTTTACAGCCGCTGCAAATTTTGCCAAACAGACTTCCACAAATCCAGATGCTGGTGCGAAGCCATGTGGGTCTGGAAAGACCAGTGGAGGCAGCAGGCCAGAACAACAACACGAGGGAGATAAGGAGGAAAATGACATCCAGATTGTTAGCGTCACCTCCCTTGCACAGAGCAGCCAACAAAGAGTTCCCCAGTCCACTGTAACAAGATCAGAGGCCGGTGCTGTGTCTTCTACACTAACAGCTCAAGGAGTAACCATGAGGAAGAGAGTTACACCTTCTCCAGCCACTAATGCAATGCTGGCAGCTCGAAAGAGGCTTTTGGATAAAGCGCTGTCACACAGGATGAAGTCATTCCACCAGGTGGCGTCACTGTTGAGGAGAGATCACTCGAGCGTCCAAGGTGCTGATTTgagaagtgcaatgcaacagcCACCCGAAACTTATGATCTGACCACTGAAAAGACTGTTATGGATGGTCAGTCCGGTGGAGGGAGTGCCCCCAGGCGTTTTCTCACACAAAGACCAGGTCTGTCTGTGCGTTCCTTTCAGCCTCTCCCTCGGGTTGGCATTCGTCTTCCTAACCGGTCACCAGCACCTTTAACATCCTCGGCCCCTGGGGTTGCCGTCATCCGTCTACAGACCCCTGGAGGCCAGGGCGCCACTAGTAGTGAGGGGAACCCGAGCCCCCAGCAGGCAGTCCAGGACACTGGAGGGAGAGGTGGTCTACAGGATCAGATTCAGACCCTGGGCTCTGAGGTGCGCAGCTTGGGTCTGGCAGTGAAGATGCTGGTGGAGCAGCAGTGCTGCCTGGAGAGGGAGCAGGCGCAGCAGACACACATTCAGAAGCAGATCCTCAGCACTCTGCAGAGCCTTGCTGCCAAACTGGGACGTTGTAGCGTTgttcaacagcagcacaaaaaAACTCCATCACCCTCTGGTTTGCCAACCGCTTCTGCATCTACCTCATTCAGCCCAGAAACCTTCAACTTCAGTCAAGGCACGTAcactcagtgcagccaaacccAGCCAAGCTACAACTCTTTAGAGAGTTTAGAAAATGTAGAGGCCTTTAAATTGCCAGGCCTGAGCCCTTCAAGCATTAATGGGTTTCCACCATGTAGCAATGCTGAGAACCTCCAACTTACTCAAACTCCCGCTCATACACAGCCGTATGCAGTTGCTTACCCACAGCAAAACAGTCAAACACTCATGCCACCCTACACACAGTCCTTTGTTTCTACATACGGCCAGTCACATTCTCAGACTTTCAGAGGATCAGAGAGTAAAACATCTGATTTCTCAAGCAGCTGTTCAGCAAGGACTCTCCAGGACTGCAGTGTGTCCACCCAGCCGGTGATGAACTCTAACCACTCTTCACAGGATCAACAGATCAATATTATCAAAGTGGAAGGACCTTAGAGGCCTTCAGATGCCACATAGTGTTTTGGGACCATAAGGGCTTGGCTGtgcttttaaaatacaaatttaaGATACACATGTTTTTACAATGAACAAATGCTGTAGCATTTCTTaaactaatttattttatttccaaagTACATTTTAAGAGAATACAAATGCAATGCTTTAGTAATCATGTGTTTATAATTTGTCTTTACAATAGGCAATTAGAGAAAATGATTATGTGCAGGCACTTTGTCATTTTTTGtcacaatgttttttattttgtatctatTATTTTTGTATCACTAGGACTGGCATTACAAACTGTTAGTTTTCATACCTCTATGctaacttaaaataaataaagagatggTTATCGTCCAAA
>XM_039826242.1
TAGCGGAAGTTACGTGTCCACCTGGGCGACACTTACaactcatttgtttatttatgtagctagctagctgtcgaTAGAAATGTGAGTTTATGTGTGTATGACTACATCATAGCTATTTCATCATGGTACGTGAACTTATTTAAACACCAATTGATCGTCGACAAGAGATTAACAGCCAAACTCACAGAGTCCCTCTGGAGTGAGAGACCATGGGCCGGTTGGATGATGCCGCCAAACACAAAGTGGTGGAGCTGCGGAAGGCGGGTCTGAGTTTCCGTAAGATCAAAGCTGTGCTGGAGCTGGAGAACATCAAGGTGTCTGCCCAGGCCATCTACCTGTTCCTGAGGGAGTATCAAGGGAGGCCGCCAGGGAGGGTTAGACCTGTGGAGGCTGGAAGCAGCACATCAACCGCACAGGTGCAGCCTCAAGTTGGAGCAACACAAGACAGCTGGAGTAACATGCGTCTCCAAAATCTTCTGCGGGAGGCATCTCACCATGCTGGCTTTACAGCCGCTGCAAATTTTGCCAAACAGACTTCCACAAATCCAGATGCTGGTGCGAAGCCATGTGGGTCTGGAAAGACCAGTGGAGGCAGCAGGCCAGAACAACAACACGAGGGAGATAAGGAGGAAAATGACATCCAGATTGTTAGCGTCACCTCCCTTGCACAGAGCAGCCAACAAAGAGTTCCCCAGTCCACTGTAACAAGATCAGAGGCCGGTGCTGTGTCTTCTACACTAACAGCTCAAGGAGTAACCATGAGGAAGAGAGTTACACCTTCTCCAGCCACTAATGCAATGCTGGCAGCTCGAAAGAGGCTTTTGGATAAAGCGCTGTCACACAGGATGAAGTCATTCCACCAGGTGGCGTCACTGTTGAGGAGAGATCACTCGAGCGTCCAAGGTGCTGATTTgagaagtgcaatgcaacagcCACCCGAAACTTATGATCTGACCACTGAAAAGCCTCTCCCTCGGGTTGGCATTCGTCTTCCTAACCGGTCACCAGCACCTTTAACATCCTCGGCCCCTGGGGTTGCCGTCATCCGTCTACAGACCCCTGGAGGCCAGGGCGCCACTAGTAGTGAGGGGAACCCGAGCCCCCAGCAGGCAGTCCAGGACACTGGAGGGAGAGGTGGTCTACAGGATCAGATTCAGACCCTGGGCTCTGAGGTGCGCAGCTTGGGTCTGGCAGTGAAGATGCTGGTGGAGCAGCAGTGCTGCCTGGAGAGGGAGCAGGCGCAGCAGACACACATTCAGAAGCAGATCCTCAGCACTCTGCAGAGCCTTGCTGCCAAACTGGGACGTTGTAGCGTTgttcaacagcagcacaaaaaAACTCCATCACCCTCTGGTTTGCCAACCGCTTCTGCATCTACCTCATTCAGCCCAGAAACCTTCAACTTCAGTCAAGGCACGTAcactcagtgcagccaaacccAGCCAAGCTACAACTCTTTAGAGAGTTTAGAAAATGTAGAGGCCTTTAAATTGCCAGGCCTGAGCCCTTCAAGCATTAATGGGTTTCCACCATGTAGCAATGCTGAGAACCTCCAACTTACTCAAACTCCCGCTCATACACAGCCGTATGCAGTTGCTTACCCACAGCAAAACAGTCAAACACTCATGCCACCCTACACACAGTCCTTTGTTTCTACATACGGCCAGTCACATTCTCAGACTTTCAGAGGATCAGAGAGTAAAACATCTGATTTCTCAAGCAGCTGTTCAGCAAGGACTCTCCAGGACTGCAGTGTGTCCACCCAGCCGGTGATGAACTCTAACCACTCTTCACAGGATCAACAGATCAATATTATCAAAGTGGAAGGACCTTAGAGGCCTTCAGATGCCACATAGTGTTTTGGGACCATAAGGGCTTGGCTGtgcttttaaaatacaaatttaaGATACACATGTTTTTACAATGAACAAATGCTGTAGCATTTCTTaaactaatttattttatttccaaagTACATTTTAAGAGAATACAAATGCAATGCTTTAGTAATCATGTGTTTATAATTTGTCTTTACAATAGGCAATTAGAGAAAATGATTATGTGCAGGCACTTTGTCATTTTTTGtcacaatgttttttattttgtatctatTATTTTTGTATCACTAGGACTGGCATTACAAACTGTTAGTTTTCATACCTCTATGctaacttaaaataaataaagagatggTTATCGTCCAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC104960164 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826241.1 True 2291 mRNA 0.48 4 13860150 13863533
XM_039826242.1 False 2205 mRNA 0.48 4 13860150 13863534

Neighbor

gene id symbol gene type direction distance location
hmox2b LOC103358700,LOC108247647,LOC100705244,LOC101479559 coding downstream 95614 13757750 ~ 13764536 (-)
coro7 LOC103358706,LOC106915773 coding downstream 111548 13636809 ~ 13748602 (-)
pam16 pam16,LOC106601835,LOC103358706,LOC107695711 coding downstream 223988 13632142 ~ 13636162 (-)
srl srl coding downstream 273396 13572655 ~ 13586754 (-)
LOC120574398 adcy9 coding downstream 292351 13532771 ~ 13567799 (-)
LOC120575451 rab26,LOC102798624,LOC101484267,LOC100707100 coding upstream 20803 13884337 ~ 13950756 (-)
LOC120574465 sstr2,LOC104918336,LOC102291375,LOC103373483 coding upstream 235921 14099455 ~ 14106823 (-)
LOC120575134 NA coding upstream 421640 14285174 ~ 14288819 (-)
rnf213a rnf213 coding upstream 520568 14384102 ~ 14417141 (-)
LOC120575368 NA coding upstream 555828 14419362 ~ 14427318 (-)
G154717 NA non-coding downstream 32359 13755664 ~ 13827791 (-)
G154723 NA non-coding downstream 84161 13774102 ~ 13775989 (-)
G154713 NA non-coding downstream 167679 13656018 ~ 13692471 (-)
G154601 NA non-coding downstream 605377 13254473 ~ 13254773 (-)
G154600 NA non-coding downstream 606944 13252924 ~ 13253206 (-)
LOC120575453 NA non-coding upstream 73234 13936768 ~ 13946397 (-)
G154788 NA non-coding upstream 214980 14078514 ~ 14099281 (-)
G154791 LOC100698953,LOC106518679,LOC103373486 non-coding upstream 222208 14085742 ~ 14087766 (-)
G154825 NA non-coding upstream 462439 14325973 ~ 14326936 (-)
LOC120575037 NA non-coding upstream 467411 14330945 ~ 14337074 (-)
tfap4 tfap4 other downstream 228314 13589483 ~ 13631836 (-)
prkar1b prkar1b,LOC107661853,LOC107653458 other downstream 438199 13335449 ~ 13421951 (-)
sun1 sun1,LOC104947709,LOC102193096,LOC103360714 other downstream 847369 12973260 ~ 13012781 (-)
iqck NA other downstream 887321 12954974 ~ 12972829 (-)
LOC120575506 LOC100697827 other downstream 1122667 12735444 ~ 12737483 (-)
med9 med9 other upstream 187204 14050738 ~ 14057354 (-)
LOC120574967 mafg,LOC104918330,LOC108241257,LOC103373400,LOC101487863,LOC106533856 other upstream 591303 14454837 ~ 14471430 (-)
cenpx cenpx other upstream 662592 14526126 ~ 14529153 (-)
LOC120574989 LOC108241285,LOC103373333,LOC106518659 other upstream 670148 14533682 ~ 14543994 (-)
LOC120574213 NA other upstream 902200 14765734 ~ 14790778 (-)

Expression


Co-expression Network