ddx47 (ddx47,LOC102790298)



Basic Information


Item Value
gene id ddx47
gene name ddx47,LOC102790298
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4305836 ~ 4314336 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039826259.1
CGTTACCGCATCTGCGCATTGCGGAGCTCAGCTGAAGACACGTTGGGGCGAAAAACATGGCGGACGACGATGTGGAAAGCGTGAAGCCAAACACAGACGAAACACTCGTTAGTTTGAGTAGTGACTGTGATAACAGTCACTTGGATAGCGGCGAAAACGAGGAGGCCGTAAAGACCTTCAAGGATTTGGGTGTTACCGAGGTCCTCTGTGAGGCTTGTGATCAGCTGGGATGGAAGAGTCCAACAAAGATTCAGATAGAAGCTGTTCCAGTAGCCCTGCAAGGGAGGGATGTTATCGGCCTGGCAGAGACGGGTTCAGGGAAGACGGGGGCCTTTGCGCTGCCCATCCTGCAGTCGCTGCTGTCCTCGCCCCAGAGGCTCCACACTCTCATCCTCACCCCTACCAGGGAGTTGGCTTTTCAGATCTCTGAGCAGTTTGAGGCCCTGGGCTCCAGCATTGGCATTAAGTGTGCTGTCATAGTTGGAGGAATCGATATGATGTCCCAGTCCTTGGTGTTGGCTAAAAAACCACACATTGTTATTGCCACACCCGGTCGGTTGATAGACCACATGGAGAACACAAAGGGCTTCTCCCTGCGAGCTCTGAAGTTCCTGGTCATGGACGAAGCCGACAGAATCCTCAACATGGACTTTGAGACGGAGGTGGATAAAATCTTGAAGGTGATTCCCAGAGAGAGGCGCACCTTCTTGTTCTCTGCCACCATGACCAAAAAGGTCCAGAAACTCCAGAGAGCCGCTCTGAAAGATCCCGTCATGTGTGCGGTGTCCACCAAATACTCAACAGTAGACAAACTCCAGCAGTACTACGTCTTCATACCATCCAAGTACAAGGACTGTTACCTGGTGTCCATCCTCAACGAGCTGGCCGGCAActcctttattattttctgcagcACGTGTAACAATGCCCAACGGGTGGCGCTGTTGTTAAGGAACCTTGGCATCACTGCTATCCCTCTTCATGGCCAGATGAGTCAGAACAAGCGTCTCGGATCGCTGAACAAGTTCAAGTCCAAGTCTCGGTCGGTGCTGCTGGCGACGGACGTGGCGTCCAGAGGACTGGACATCCCTCACGTCGACTGCGTCATCAACTACGACATCCCCACTCACTCCAAGGACTACATCCACAGAGTCGGACGGACAGCCAGAGCAGGGCGCTCTGGGAAATCCATCACTTTTGTCACTCAATATGACGTGGAGCTCTTCCAGCGAATCGAAAGCCTGATTGGGAAGAAACTTCCGGCCTACCCAACCCAGGAAGATGAAGTGATGATGTTGGTTGAGAGGGTGAGCGAGGCCCAGAGATTTGCCAGGCTGGAAATGAAGGAGCAAGGTGAGAAAAGGAAAAGGCCCAGAGGAGGAAATGGAGACGAGGATGACACGGAACAAGCAAGCGGAGTGAGGAAGAaagtgagaggaggaggagcaggggggaggaggaggaggaggaggaggaagaggagggatgAAGAAGAGGGGTGCAGCAGCCTGGAGGGGAGGACGCTGAATCCTCCTACATTAACAGACTGTACATAACCATAACACATGCGTTTCCTGCCCCTCTACAAGATTTTTCCATTTGTAATAAAATGCCATTGTAAAAACCAGA

Function


symbol description
ddx47 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Orthologous to human DDX47 (DEAD-box helicase 47).

NR:

description
probable ATP-dependent RNA helicase DDX47

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14777 DDX47, RRP3; ATP-dependent RNA helicase DDX47/RRP3

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039826259.1 True 1629 mRNA 0.52 12 4305836 4314336

Neighbor


gene id symbol gene type direction distance location
LOC120574358 LOC102302242,LOC108236130,LOC103143665,LOC107376256,LOC103468406,LOC101471213,LOC105929903 coding downstream 2177 4215833 ~ 4303659 (-)
LOC120573799 aanat1b,LOC104938975,LOC106934060,LOC102233098,LOC106937025,LOC103468403,LOC105929941,LOC107104616 coding downstream 91741 4211146 ~ 4214095 (-)
trnas-aga_11 NA coding downstream 275576 4030179 ~ 4030260 (-)
mchr1b LOC103359996,LOC101467517,LOC102311886,LOC100690541,LOC102197681 coding downstream 333438 3969793 ~ 3972398 (-)
LOC120575475 NA coding downstream 590609 3691446 ~ 3715227 (-)
LOC120574171 wbp11 coding upstream 458 4314794 ~ 4324641 (-)
LOC120573904 NA coding upstream 33636 4347972 ~ 4351094 (-)
LOC120574889 bglap coding upstream 41349 4355685 ~ 4358977 (-)
LOC120574253 NA coding upstream 179248 4493584 ~ 4505527 (-)
LOC120573943 gsg1 coding upstream 214116 4528452 ~ 4539716 (-)
G151691 NA non-coding downstream 37182 4268330 ~ 4268654 (-)
G151639 LOC103360002,LOC100712452,LOC105013158,LOC102214151,LOC101470166,LOC106937022,LOC103143670 non-coding downstream 140338 4130804 ~ 4165498 (-)
G151615 NA non-coding downstream 193647 4055214 ~ 4112189 (-)
G151633 NA non-coding downstream 222155 4082918 ~ 4083681 (-)
G151561 NA non-coding downstream 341425 3964048 ~ 3964411 (-)
LOC120574176 NA non-coding upstream 19936 4334272 ~ 4337224 (-)
G151783 NA non-coding upstream 97180 4411516 ~ 4413160 (-)
G151785 NA non-coding upstream 163048 4477384 ~ 4478879 (-)
G151790 NA non-coding upstream 204445 4518781 ~ 4523574 (-)
G151799 NA non-coding upstream 268868 4583204 ~ 4584160 (-)
G151344 smarca4 other downstream 988921 3311727 ~ 3316915 (-)
G151227 LOC103393680 other downstream 1390469 2911326 ~ 2915367 (-)
G151216 LOC106957010,LOC107376217,LOC103393680 other downstream 1409493 2873918 ~ 2896343 (-)
G151146 NA other downstream 1500425 2399809 ~ 2805411 (-)
farsa farsa other downstream 2144112 2132732 ~ 2161724 (-)
LOC120575464 NA other upstream 47512 4361848 ~ 4367343 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other upstream 101841 4416177 ~ 4464991 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other upstream 270837 4585173 ~ 4765493 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other upstream 863980 5178316 ~ 5227241 (-)
G152114 rbx1 other upstream 1147510 5461846 ~ 5464418 (-)

Expression



Co-expression Network