polr3h (polr3h)


Basic Information

Item Value
gene id polr3h
gene name polr3h
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5360457 ~ 5366750 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826294.1
AGCGCACTGTCGTAAATAATCACGTGGAGACATCATGGATGCTCCTGTGAGTTTGCTGTAGATTGTTATACCTTACCTGTAGTCTTTAGCTCGATTTTGAACATTTgttgataaaataaaattcatctCCGCTGTGGAGAAACAAGAAACGCTGTCCTGAAAACAGGCGACACCTCCCAGCCCAGCTGACAGTGCGGTCCGGTTGTTTTACCACagcagctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacattatgtgtgtgtaagtgagtaGATGCTCACAGAGTGTAGTCTGCATCATGTTCGTGTTGGTGGAGATGGTGGACACGGTCCGGATCCCTCCGTGGAACTTCCAGAGACAACTCAACGACGCCATAGCTGAGGAGCTGAACAAGAAACTGGCcaacaagGTGGTCTACAACGTTGGCCTGTGCATCTGCTTGTACGACATCACTAAACTGGAGGATTCCTATATATTCCCGGGGGACGGAGCCTCACACACCAAAGTTCATTTCAGGTATGTGGTTTTTCACCCATTTCTCGATGAGATCCTGCTCGGCAAGATCAAGTACTGCAGTCAAGAGGGAGTTCATGTGACCATGGGCTTCTTTGATGACATTCTCATTCCACCAGAGTCACTTCAACAGCCTGCAAAATTCGATGAAGCCGAGCAGGTTTGGCTTTGGGAATACGAGACGGACGAGGGGGCCCACGATCTCTACATGGACCAGGGAGAGGAGATCCGATTTCGGGTGACCGATGAAGTCTTTGTGGACACGTCGCCGACGGGGCCGGCCGCGGCGGCGACGGACACGCCGGCTCAACCGGGACAGTCGACGGCGCCGCCCCCAGAGGACAGCGGGGAAAAGAAAGAGGCCCCGTACACTCTGATTGGGACCATCTGTGACCCGGGGCTGGGGCTGCTGTCATGGTGGAACAGTTAGcgctgaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagacgacatTTGGTGGCAACTGACAGCTCGACCATCGTGACGAGAGACGGCCAGCTGGAGACACAGAACCCAGGACGTTGGTACACAAGTCAAGACACAACGTCGAGCAGCTCCCTGAACCAAGATGTGATGTCACATTGAGactgattgttgttgtttttttataatactGCCCTGAACACGCCAGCTTCATGTGTACATATGTGAAATTGACCCTACAGAATAATTCAATGGACATTTGGTGAGATTTTGACCCCCAATTCAAAAGAATTAGGCCATTAATCATTTGAATCTCAACGTCATCACTACTTTGGCGTGACAGTCGGACATACACAGGTTATAAAATCTGACGTAAATGGCTCAAAGTAGGAGGTGTTGAACCCTGAGCAGCATCTGTCAGGGATGAAAACGATGTGGCGCCTAACGGtccgtgtaacgcttatcagttcaattttctaagaaCAAACGgatatttggaaaaacagaaaaatgggttcaaatatcaat
>XM_039826295.1
AGCGCACTGTCGTAAATAATCACGTGGAGACATCATGGATGCTCCTGTGAGTTTGCTGTAGATTGTTATACCTTACCTGTAGTCTTTAGCTCGATTTTGAACATTTgttgataaaataaaattcatctCCGCTGTGGAGAAACAAGAAACGCTGTCCTGAAAACAGGCGACACCTCCCAGCCCAGCTGACAGTGCGGTCCGGTTGTTTTACCACagcagctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacattatgtgtgtgtaagtgagtaGATGCTCACAGAGTGTAGTCTGCATCATGTTCGTGTTGGTGGAGATGGTGGACACGGTCCGGATCCCTCCGTGGAACTTCCAGAGACAACTCAACGACGCCATAGCTGAGGAGCTGAACAAGAAACTGGCcaacaagGTGGTCTACAACGTTGGCCTGTGCATCTGCTTGTACGACATCACTAAACTGGAGGATTCCTATATATTCCCGGGGGACGGAGCCTCACACACCAAAGTTCATTTCAGGTATGTGGTTTTTCACCCATTTCTCGATGAGATCCTGCTCGGCAAGATCAAGTACTGCAGTCAAGAGGGAGTTCATGTGACCATGGGCTTCTTTGATGACATTCTCATTCCACCAGAGTCACTTCAACAGCCTGCAAAATTCGATGAAGCCGAGCAGGTTTGGCTTTGGGAATACGAGACGGACGAGGGGGCCCACGATCTCTACATGGACCAGGGAGAGGAGATCCGATTTCGGGTGACCGATGAAGTCTTTGTGGACACGTCGCCGACGGGGCCGGCCGCGGCGGCGACGGACACGCCGGCTCAACCGGGACAGTCGACGGCGCCGCCCCCAGAGGACAGCGGGGAAAAGAAAGAGGCCCCGTACACTCTGATTGGGACCATCTGTGACCCGGGGCTGGGGCTGCTGTCATGGTGGAACAGTTAGcgctgaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagacgacatTTGGTGGCAACTGACAGCTCGACCATCGTGACGAGAGACGGCCAGCTGGAGACACAGAACCCAGGACGTTGGTACACAAGTCAAGACACAACGTCGAGCAGCTCCCTGAACCAAGATGTGATGTCACATTGAGactgattgttgttgtttttttataatactGCCCTGAACACGCCAGCTTCATGTGTACATATGTGAAATTGACCCTACAGAATAATTCAATGGACATTTGGTGAGATTTTGACCCCCAATTCAAAAGAATTAGGCCATTAATCATTTGAATCTCAACGTCATCACTACTTTGGCGTGACAGTCGGACATACACAGGTTATAAAATCTGACGTAAATGGCTCAAAGTAGGAGGTGTTGAACCCTGAGCAGCATCTGTCAGGGATGAAAACGATGTGGCGCCTAACGGtccgtgtaacgcttatcagttcaattttctaagaaCAAACGgatatttggaaaaacagaaaaatgggttcaaatatcaat
>XM_039826297.1
AGCGCACTGTCGTAAATAATCACGTGGAGACATCATGGATGCTCCTGTGAGTTTGCTGTAGATTGTTATACCTTACCTGTAGTCTTTAGCTCGATTTTGAACATTTgttgataaaataaaattcatctCCGCTGTGGAGAAACAAGAAACGCTGTCCTGAAAACAGGCGACACCTCCCAGCCCAGCTGACAGTGCGGTCCGGTTGTTTTACCACagcagctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacattatgtgtgtgtaagtgagtaGATGCTCACAGAGTGTAGTCTGCATCATGTTCGTGTTGGTGGAGATGGTGGACACGGTCCGGATCCCTCCGTGGAACTTCCAGAGACAACTCAACGACGCCATAGCTGAGGAGCTGAACAAGAAACTGGCcaacaagGTGGTCTACAACGTTGGCCTGTGCATCTGCTTGTACGACATCACTAAACTGGAGGATTCCTATATATTCCCGGGGGACGGAGCCTCACACACCAAAGTTCATTTCAGGTATGTGGTTTTTCACCCATTTCTCGATGAGATCCTGCTCGGCAAGATCAAGTACTGCAGTCAAGAGGGAGTTCATGTGACCATGGGCTTCTTTGATGACATTCTCATTCCACCAGAGTCACTTCAACAGCCTGCAAAATTCGATGAAGCCGAGCAGGTTTGGCTTTGGGAATACGAGACGGACGAGGGGGCCCACGATCTCTACATGGACCAGGGAGAGGAGATCCGATTTCGGGTGACCGATGAAGTCTTTGTGGACACGTCGCCGACGGGGCCGGCCGCGGCGGCGACGGACACGCCGGCTCAACCGGGACAGTCGACGGCGCCGCCCCCAGAGGACAGCGGGGAAAAGAAAGAGGCCCCGTACACTCTGATTGGGACCATCTGTGACCCGGGGCTGGGGCTGCTGTCATGGTGGAACAGTTAGcgctgaagaagaagaagaagaagaagaagaagaagaagacgacatTTGGTGGCAACTGACAGCTCGACCATCGTGACGAGAGACGGCCAGCTGGAGACACAGAACCCAGGACGTTGGTACACAAGTCAAGACACAACGTCGAGCAGCTCCCTGAACCAAGATGTGATGTCACATTGAGactgattgttgttgtttttttataatactGCCCTGAACACGCCAGCTTCATGTGTACATATGTGAAATTGACCCTACAGAATAATTCAATGGACATTTGGTGAGATTTTGACCCCCAATTCAAAAGAATTAGGCCATTAATCATTTGAATCTCAACGTCATCACTACTTTGGCGTGACAGTCGGACATACACAGGTTATAAAATCTGACGTAAATGGCTCAAAGTAGGAGGTGTTGAACCCTGAGCAGCATCTGTCAGGGATGAAAACGATGTGGCGCCTAACGGtccgtgtaacgcttatcagttcaattttctaagaaCAAACGgatatttggaaaaacagaaaaatgggttcaaatatcaa
>XM_039826298.1
AGCGCACTGTCGTAAATAATCACGTGGAGACATCATGGATGCTCCTGTGAGTTTGCTGTAGATTGTTATACCTTACCTGTAGTCTTTAGCTCGATTTTGAACATTTgttgataaaataaaattcatctCCGCTGTGGAGAAACAAGAAACGCTGTCCTGAAAACAGGCGACACCTCCCAGCCCAGCTGACAGTGCGGTCCGGTTGTTTTACCACagcagctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacattatgtgtgtgtaagtgagtaGATGCTCACAGAGTGTAGTCTGCATCATGTTCGTGTTGGTGGAGATGGTGGACACGGTCCGGATCCCTCCGTGGAACTTCCAGAGACAACTCAACGACGCCATAGCTGAGGAGCTGAACAAGAAACTGGCcaacaagGTGGTCTACAACGTTGGCCTGTGCATCTGCTTGTACGACATCACTAAACTGGAGGATTCCTATATATTCCCGGGGGACGGAGCCTCACACACCAAAGTTCATTTCAGGTATGTGGTTTTTCACCCATTTCTCGATGAGATCCTGCTCGGCAAGATCAAGTACTGCAGTCAAGAGGGAGTTCATGTGACCATGGGCTTCTTTGATGACATTCTCATTCCACCAGAGTCACTTCAACAGCCTGCAAAATTCGATGAAGCCGAGCAGGTTTGGCTTTGGGAATACGAGACGGACGAGGGGGCCCACGATCTCTACATGGACCAGGGAGAGGAGATCCGATTTCGGGTGACCGATGAAGTCTTTGTGGACACGTCGCCGACGGGGCCGGCCGCGGCGGCGACGGACACGCCGGCTCAACCGGGACAGTCGACGGCGCCGCCCCCAGAGGACAGCGGGGAAAAGAAAGAGGCCCCGTACACTCTGATTGGGACCATCTGTGACCCGGGGCTGGGGCTGCTGTCATGGTGGAACAGTTAGcgctgaagaagaagaagaagaagaagaagaagaagaagaagaagacgacatTTGGTGGCAACTGACAGCTCGACCATCGTGACGAGAGACGGCCAGCTGGAGACACAGAACCCAGGACGTTGGTACACAAGTCAAGACACAACGTCGAGCAGCTCCCTGAACCAAGATGTGATGTCACATTGAGactgattgttgttgtttttttataatactGCCCTGAACACGCCAGCTTCATGTGTACATATGTGAAATTGACCCTACAGAATAATTCAATGGACATTTGGTGAGATTTTGACCCCCAATTCAAAAGAATTAGGCCATTAATCATTTGAATCTCAACGTCATCACTACTTTGGCGTGACAGTCGGACATACACAGGTTATAAAATCTGACGTAAATGGCTCAAAGTAGGAGGTGTTGAACCCTGAGCAGCATCTGTCAGGGATGAAAACGATGTGGCGCCTAACGGtccgtgtaacgcttatcagttcaattttctaagaaCAAACGgatatttggaaaaacagaaaaatgggttcaaatatcaat
>XM_039826299.1
AGCGCACTGTCGTAAATAATCACGTGGAGACATCATGGATGCTCCTGTGAGTTTGCTGTAGATTGTTATACCTTACCTGTAGTCTTTAGCTCGATTTTGAACATTTgttgataaaataaaattcatctCCGCTGTGGAGAAACAAGAAACGCTGTCCTGAAAACAGGCGACACCTCCCAGCCCAGCTGACAGTGCGGTCCGGTTGTTTTACCACagcagctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacattatgtgtgtgtaagtgagtaGATGCTCACAGAGTGTAGTCTGCATCATGTTCGTGTTGGTGGAGATGGTGGACACGGTCCGGATCCCTCCGTGGAACTTCCAGAGACAACTCAACGACGCCATAGCTGAGGAGCTGAACAAGAAACTGGCcaacaagGTGGTCTACAACGTTGGCCTGTGCATCTGCTTGTACGACATCACTAAACTGGAGGATTCCTATATATTCCCGGGGGACGGAGCCTCACACACCAAAGTTCATTTCAGGTATGTGGTTTTTCACCCATTTCTCGATGAGATCCTGCTCGGCAAGATCAAGTACTGCAGTCAAGAGGGAGTTCATGTGACCATGGGCTTCTTTGATGACATTCTCATTCCACCAGAGTCACTTCAACAGCCTGCAAAATTCGATGAAGCCGAGCAGGTTTGGCTTTGGGAATACGAGACGGACGAGGGGGCCCACGATCTCTACATGGACCAGGGAGAGGAGATCCGATTTCGGGTGACCGATGAAGTCTTTGTGGACACGTCGCCGACGGGGCCGGCCGCGGCGGCGACGGACACGCCGGCTCAACCGGGACAGTCGACGGCGCCGCCCCCAGAGGACAGCGGGGAAAAGAAAGAGGCCCCGTACACTCTGATTGGGACCATCTGTGACCCGGGGCTGGGGCTGCTGTCATGGTGGAACAGTTAGcgctgaagaagaagaagaagaagaagaagaagaagacgacatTTGGTGGCAACTGACAGCTCGACCATCGTGACGAGAGACGGCCAGCTGGAGACACAGAACCCAGGACGTTGGTACACAAGTCAAGACACAACGTCGAGCAGCTCCCTGAACCAAGATGTGATGTCACATTGAGactgattgttgttgtttttttataatactGCCCTGAACACGCCAGCTTCATGTGTACATATGTGAAATTGACCCTACAGAATAATTCAATGGACATTTGGTGAGATTTTGACCCCCAATTCAAAAGAATTAGGCCATTAATCATTTGAATCTCAACGTCATCACTACTTTGGCGTGACAGTCGGACATACACAGGTTATAAAATCTGACGTAAATGGCTCAAAGTAGGAGGTGTTGAACCCTGAGCAGCATCTGTCAGGGATGAAAACGATGTGGCGCCTAACGGtccgtgtaacgcttatcagttcaattttctaagaaCAAACGgatatttggaaaaacagaaaaatgggttcaaatatcaa

Function

symbol description
polr3h Predicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Acts upstream of or within hematopoietic stem cell homeostasis. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Is expressed in hematopoietic system. Orthologous to human POLR3H (RNA polymerase III subunit H).

NR:

description
PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03022 RPC8, POLR3H; DNA-directed RNA polymerase III subunit RPC8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826294.1 True 1550 mRNA 0.48 6 5360457 5366750
XM_039826295.1 False 1520 mRNA 0.49 7 5360457 5366750
XM_039826297.1 False 1507 mRNA 0.49 7 5360458 5366750
XM_039826298.1 False 1514 mRNA 0.49 7 5360457 5366750
XM_039826299.1 False 1504 mRNA 0.49 7 5360458 5366750

Neighbor

gene id symbol gene type direction distance location
LOC120575093 LOC104932054,LOC103370794,LOC101074219,LOC100695912,LOC101476535 coding downstream 1626 5350169 ~ 5358831 (-)
gucy2ca gucy2c coding downstream 33787 5309600 ~ 5326670 (-)
LOC120575084 LOC105918010 coding downstream 78816 5276207 ~ 5281641 (-)
zmp:0000000896 card10 coding downstream 198520 5143111 ~ 5161937 (-)
LOC120575075 LOC103368117 coding downstream 219344 5124962 ~ 5141113 (-)
LOC120574211 aco2,LOC103370792,LOC105918004 coding upstream 315 5367065 ~ 5384844 (-)
tefb LOC106601241,LOC106607162,LOC107091051 coding upstream 32273 5399023 ~ 5413979 (-)
LOC120575348 NA coding upstream 49387 5416137 ~ 5437363 (-)
st13 st13 coding upstream 99501 5466251 ~ 5478667 (-)
cbx7a NA coding upstream 167106 5533856 ~ 5541201 (-)
G152081 NA non-coding downstream 70096 5287858 ~ 5290361 (-)
G152052 NA non-coding downstream 189805 5170304 ~ 5170652 (-)
G151951 NA non-coding downstream 336365 5013517 ~ 5024092 (-)
G151924 NA non-coding downstream 467139 4869887 ~ 4893318 (-)
G151799 NA non-coding downstream 776297 4583204 ~ 4584160 (-)
G152104 tob2 non-coding upstream 23755 5390505 ~ 5395115 (-)
G152107 NA non-coding upstream 79753 5446503 ~ 5448057 (-)
G152233 ep300 non-coding upstream 141967 5508717 ~ 5509392 (-)
G152249 pdap1,LOC102785718 non-coding upstream 216629 5583379 ~ 5587735 (-)
G152256 NA non-coding upstream 234563 5601313 ~ 5606088 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other downstream 133216 5178316 ~ 5227241 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other downstream 594964 4585173 ~ 4765493 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other downstream 895466 4416177 ~ 4464991 (-)
LOC120575464 NA other downstream 993114 4361848 ~ 4367343 (-)
G151344 smarca4 other downstream 2043542 3311727 ~ 3316915 (-)
G152114 rbx1 other upstream 95096 5461846 ~ 5464418 (-)
top3a top3a,LOC102783137 other upstream 182541 5549291 ~ 5567539 (-)
atp5mf atp5j2,LOC102786280 other upstream 207930 5574680 ~ 5613722 (-)
bud31 bud31,LOC106595689 other upstream 213513 5580263 ~ 5582864 (-)
LOC120574101 NA other upstream 625187 5991937 ~ 5995189 (-)

Expression


Co-expression Network