XLOC_004867


Basic Information

Item Value
gene id XLOC_004867
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 34844442 ~ 34846842 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010974
ATTTTATGACTACATACAAAAATATCCCAGCTGCTTttgaggaatttttttttttaatgaacagaaaTTGTGCACGTAAATGTGGTCATGGTTTTAACCAGTACTCGTGGAGATCTGCAACTTACTCTTTACACACTGTCTAAATGCTGCTAAAGGTTCCCATGAAGAGTTCAGATTGCGAATAGTGTCTTGATCAGCAAAGGTACGTCTCTTAATTCATTATGAATTCACTGAGATAAGATTGGAAAAGCAACTCCAGTTTGGTGTTGAAACCATGAGTGTTACTGCAGTGGCTGCTACTATTTGCACTACAATCTTTCTTCTTACTGAAAGCACTTCTGTCTTCCTGTGTGTgttataaaaaaagaacaaacattaACACTCAATCATATAGCTGATCAAGATACATCGTGCCGAAAACTATGTGGTCAAATATATAAAGAATTGTGAGTGTGAGAAATGTTATGAACAAAAAAGTTGGccaataaatttttaaataaaaactttatttttttttatttacattagagGAACATTTGATAAAATAACAGCGATTTCAAATATTGTATATATGCTAGCTATATATTATGTACAGTcctaaatacaaaacaataatgaCCGCATGGACAATTTTCATCATCAAGCTCTTTCACACAAAGCACAGTGCCTGGTTGTACAGTATTGTGCACTGAGGAGATGAAAGTGTATTGTAGATGTTTAGATCCCCTGCTTGAAATGATGTAACTGTCCTCTTACAATCTGTTTGGGCTAAGCTGAAATTTTGTTTCTAAATTTTTGTGCATACCAACCATTCTTGTTTGTTTCACCACTCTGAAATGAATTAAGCCATTATATGTGTATAGCTATgggaaaaatataatacaattctcTGGATTTATTAAGCATGAATTTGAGTAAAAagtaaatagttttgttttatacGTCTCTGAAAACAattcttgtaatttttttaaattaaagtagaGCATTTCAGTCTTAAAATGGTCaaagtttttaattgttaaatgttttttaatttgctgtgactgaaaatacattataaaaatgctgagatccacacaattccttcatattgtcccaacacaaatcagtaaACTTAATCGTTTTgacaattttaagtggattgaacataaataaattatcCCCTCAAAACAACTTAACAATTGTGTTGGgtcaaaaagtcattttttgagtgtaggtgTAATTTTTAGTCATCCAAATATTGATTTTAGAGTTGCTCCAATCAGGattttgcagccgatacagactaccgattccttgtcatggtgatgtTACCTAAGAGTGTAAATTAAGGATGTTGTATTTTATCTCTTACATACATCTATTTTACCCATTTAGGTGTGAACAtatcatggccagaagcagctttaaagaaaataatataatactgaTATAAAAATTGGAAAGAAATATTACAAACAATCGCTCCGCTCgtgtcacagcagctcaaaacacagtaaaaacaaTGCAACAAAGAGACCATCACTCACGCGAGTTATGCCAATAGAATGTATTTACAGAGAATTTAAGTGGTCTCCTACTTAATTTTTTGTAGCTGTTTACTGTCAACAGACATAAGTGGGACATTTTATGCGAAATATCTAcgtcaatggtctcaaactcaattcctggagagccacaattctgcatagtttagctccaaccacctccaactcacacctgcttaataacCTCTAGTAGTCTTGATCCCCTTGATTAATTGGCCCAGcggtgtttgattaggattggagcaaaactgtagagctgcggccctccaggaatcaagtttgagaacTGTGATCTACATCAGGGGTGCCTAAacacggtcctggagggccggtttcctgcaaattttagctccaacttgcttcaacacacctgcacgggtGTTTCAGGAAAGCCTATTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010974 True 1949 lncRNA 0.35 2 34844442 34846842

Neighbor

gene id symbol gene type direction distance location
XLOC_004866 tepsin coding upstream 1930 34827808 ~ 34842512 (+)
XLOC_004865 slc38a10 coding upstream 21621 34763795 ~ 34822821 (+)
XLOC_004864 si:dkey-21c1.8 coding upstream 98111 34732262 ~ 34746331 (+)
XLOC_004863 NA coding upstream 373979 34459669 ~ 34470463 (+)
XLOC_004862 tha1 coding upstream 447303 34378733 ~ 34397139 (+)
XLOC_004868 si:dkey-21c1.4 coding downstream 7720 34854562 ~ 34870089 (+)
XLOC_004869 CR854979.1 coding downstream 34935 34881777 ~ 34881895 (+)
XLOC_004870 tbcc coding downstream 44687 34891529 ~ 34892823 (+)
XLOC_004871 prph2a coding downstream 50114 34896956 ~ 34901874 (+)
XLOC_004872 qki2 coding downstream 106196 34953038 ~ 35019519 (+)
XLOC_004854 NA non-coding upstream 1237854 33595902 ~ 33606588 (+)
XLOC_004855 NA non-coding upstream 1239004 33602524 ~ 33605438 (+)
XLOC_004850 NA non-coding upstream 1501157 33340215 ~ 33343285 (+)
XLOC_004848 BX936416.1 non-coding upstream 1892546 32951782 ~ 32951896 (+)
XLOC_004874 NA non-coding downstream 211305 35058147 ~ 35059608 (+)
XLOC_004876 CU459210.1 non-coding downstream 259733 35106575 ~ 35107998 (+)
XLOC_004879 NA non-coding downstream 498983 35345825 ~ 35348411 (+)
XLOC_004881 FO681473.1 non-coding downstream 764856 35611698 ~ 35611814 (+)

Expression


Co-expression Network