LOC120575491 (pcyt2,LOC103373415,LOC101487187)


Basic Information

Item Value
gene id LOC120575491
gene name pcyt2,LOC103373415,LOC101487187
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14441803 ~ 14451655 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826316.1
GTAGCGTGTTGTGCGTCGTTGCGTCGCCGATGAAGGAGGCGTTGGCGCATCGCACTGCTGCCGCCGaagctgctggagctgctgctgctgctgctgacacaCAAGCCGGCTGTCCTGCACTGAAAAGCGACTCACGACTGACACCGTTCACCATCTTAACCGGAGGAAGTCGCTCTGCAGCTACAGTTGCACTTTTAAGTGATCACTCGCCAGATTCAAAAATGATCAAGAACGgacatcaccaccaccaccaagtGAACACAGCAGCCGGGAAAGACGCAGGGACGATCCCAGGCACCGCAGCTTGCAGTCCCGAGAAGAGGAGGCGAAGAATCCGGGTGTGGTGCGATGGCTGCTATGACATGGTCCATTATGGCCACTCCAACCAGCTGCGACAGGCCAAGGCCATGGGAGATTACCTCATCGTTGGAGTACACACAGATAgtgAGATTGCGAAGCACAAGGGTCCGCCAGTCTTCACTCAGGCAGAAAGATATAAGATGGTGCGGGCCATAAAATGGGTGGATGAAGTTGTGGAAGGAGCGCCTTATGTCACCACCCTCCAGACCCTCGACAAGTACAACTGTGACTTCTGTGTGCACGGAGATGATATAACACTAACAGTGGATGGGAAAGACACATATGAGGAGGTGAAGAAGTCAGGGCGGTACAGGGAGTGTAAGAGAACCCAGGGAGTTTCAACCACAGATCTGGTTGGCAGAATGCTACTGATGACCAAAGCACATCACAGCAACATTGATAGTTCAGACTATCAGCAGCACACAGACAACTTTGGAAAGGGCTCACATGGTCAGAAGGGCCACAGTCCCTGGACTGGGGTGTCTCAGTTCCTGCAGACTTCACAGAAGATCATCCAGTTTGCTTCAGGCCAGGAGCCTCAACCCGGAGACACCATCATCTATGTGGCAGGAGCCTTTGACCTCTTCCACATTGGCCATGTGGACTTCCTGGAAGCAGTGCATAAGCTCGCAGAAAAGCCATACATTATAGTGGGGTTGCACTTTGATCAGGAGGTAAACCGCTACAAAGGGAAAAACTACCCCATCATGAATGTCCACGAGAGAACTCTCAGCGTCCTGGCTTGTCGAtATGTGTCAGAAGTAGTGATTGGTGCACCCTTTGCAGTCACAAAAGATTTACTGGACCATTTTAAGGTGGATCTTGTATGCCATGGAAAGACAGAAATATATCCTGACAAGGATGGATCCGACCCTTACGCTGAGCCGAGAAGGGAAGGAATTCTGCGTACCGTTGACAGTGTCAACAGCCTCACTACAGATGCCATTGTGCAGAGGATAATCaaaaacagGTTGCTATTTGAAGCAAGGAACCAGAAGAAAGAGGCCAACGAGATTGCTGTGATCCAGGCCATGAAGCGACAAGAGGAGGAAAAGACTAAAGAAAGAGCCCAGGCTGTGCTGTAGGAAGGCCCTAAAGAAGCACCATCGACTTAGTGTCAACATAACACTGACAAGCTCAATTATTCTAAACTCATGTACAGTAAAATCAACCCTTTTGTATGTGTTATGACACCCTCCACACACGATCCTGGCTAATGACAGCAGTGCTTAGAGCAGCCCATTTAAAGCCAGGGCGGTATAGTCTGCTGTGGGATCATCaggtatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
>XM_039826317.1
GCGTGTTGTGCGTCGTTGCGTCGCCGATGAAGGAGGCGTTGGCGCATCGCACTGCTGCCGCCGaagctgctggagctgctgctgctgctgctgacacaCAAGCCGGCTGTCCTGCACTGAAAAGCGACTCACGACTGACACCGTTCACCATCTTAACCGGAGGAAGTCGCTCTGCAGCTACAGTTGCACTTTTAAGTGATCACTCGCCAGATTCAAAAATGATCAAGAACGgacatcaccaccaccaccaagtGAACACAGCAGCCGGGAAAGACGCAGGGACGATCCCAGGCACCGCAGCTTGCAGTCCCGAGAAGAGGAGGCGAAGAATCCGGGTGTGGTGCGATGGCTGCTATGACATGGTCCATTATGGCCACTCCAACCAGCTGCGACAGGCCAAGGCCATGGGAGATTACCTCATCGTTGGAGTACACACAGATAgtgAGATTGCGAAGCACAAGGGTCCGCCAGTCTTCACTCAGGCAGAAAGATATAAGATGGTGCGGGCCATAAAATGGGTGGATGAAGTTGTGGAAGGAGCGCCTTATGTCACCACCCTCCAGACCCTCGACAAGTACAACTGTGACTTCTGTGTGCACGGAGATGATATAACACTAACAGTGGATGGGAAAGACACATATGAGGAGGTGAAGAAGTCAGGGCGGTACAGGGAGTGTAAGAGAACCCAGGGAGTTTCAACCACAGATCTGGTTGGCAGAATGCTACTGATGACCAAAGCACATCACAGCAACATTGATAGTTCAGACTATCAGCAGCACACAGACAACTTTGGAAAGAAGGGCCACAGTCCCTGGACTGGGGTGTCTCAGTTCCTGCAGACTTCACAGAAGATCATCCAGTTTGCTTCAGGCCAGGAGCCTCAACCCGGAGACACCATCATCTATGTGGCAGGAGCCTTTGACCTCTTCCACATTGGCCATGTGGACTTCCTGGAAGCAGTGCATAAGCTCGCAGAAAAGCCATACATTATAGTGGGGTTGCACTTTGATCAGGAGGTAAACCGCTACAAAGGGAAAAACTACCCCATCATGAATGTCCACGAGAGAACTCTCAGCGTCCTGGCTTGTCGAtATGTGTCAGAAGTAGTGATTGGTGCACCCTTTGCAGTCACAAAAGATTTACTGGACCATTTTAAGGTGGATCTTGTATGCCATGGAAAGACAGAAATATATCCTGACAAGGATGGATCCGACCCTTACGCTGAGCCGAGAAGGGAAGGAATTCTGCGTACCGTTGACAGTGTCAACAGCCTCACTACAGATGCCATTGTGCAGAGGATAATCaaaaacagGTTGCTATTTGAAGCAAGGAACCAGAAGAAAGAGGCCAACGAGATTGCTGTGATCCAGGCCATGAAGCGACAAGAGGAGGAAAAGACTAAAGAAAGAGCCCAGGCTGTGCTGTAGGAAGGCCCTAAAGAAGCACCATCGACTTAGTGTCAACATAACACTGACAAGCTCAATTATTCTAAACTCATGTACAGTAAAATCAACCCTTTTGTATGTGTTATGACACCCTCCACACACGATCCTGGCTAATGACAGCAGTGCTTAGAGCAGCCCATTTAAAGCCAGGGCGGTATAGTCTGCTGTGGGATCATCaggtatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
pcyt2 Predicted to enable catalytic activity. Predicted to act upstream of or within phospholipid biosynthetic process. Is expressed in central nervous system; cranial ganglion; epiphysis; and ventral mesoderm. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia. Orthologous to human PCYT2 (phosphate cytidylyltransferase 2, ethanolamine).

NR:

description
PREDICTED: ethanolamine-phosphate cytidylyltransferase

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00967 PCYT2; ethanolamine-phosphate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826316.1 True 1722 mRNA 0.50 13 14441803 14451655
XM_039826317.1 False 1704 mRNA 0.50 13 14441803 14451652

Neighbor

gene id symbol gene type direction distance location
LOC120575370 LOC104945235 coding downstream 2692 14430021 ~ 14439111 (-)
LOC120575368 NA coding downstream 14485 14419362 ~ 14427318 (-)
rnf213a rnf213 coding downstream 24662 14384102 ~ 14417141 (-)
LOC120575134 NA coding downstream 152984 14285174 ~ 14288819 (-)
LOC120574465 sstr2,LOC104918336,LOC102291375,LOC103373483 coding downstream 334980 14099455 ~ 14106823 (-)
pycr1a LOC103373386,LOC104918329,LOC106533854 coding upstream 20440 14472095 ~ 14475790 (-)
LOC120575481 myadml2,LOC103373375 coding upstream 25179 14476834 ~ 14479374 (-)
notum1a notum,LOC104918326 coding upstream 29682 14481337 ~ 14488923 (-)
LOC120575183 NA coding upstream 77783 14529438 ~ 14532650 (-)
LOC120575160 tmem235,LOC104962294,LOC100710065,LOC101469204 coding upstream 266338 14717993 ~ 14730049 (-)
LOC120575037 NA non-coding downstream 104729 14330945 ~ 14337074 (-)
G154825 NA non-coding downstream 114867 14325973 ~ 14326936 (-)
G154788 NA non-coding downstream 342522 14078514 ~ 14099281 (-)
G154791 LOC100698953,LOC106518679,LOC103373486 non-coding downstream 354037 14085742 ~ 14087766 (-)
LOC120575453 NA non-coding downstream 495406 13936768 ~ 13946397 (-)
G154948 LOC104962285,LOC104925065 non-coding upstream 176095 14627750 ~ 14664671 (-)
G154952 cyth1,LOC103140955,LOC102194078 non-coding upstream 181523 14633178 ~ 14636802 (-)
G154953 cyth1,LOC103392816,LOC101076412 non-coding upstream 188447 14640102 ~ 14647069 (-)
G155025 NA non-coding upstream 443724 14895379 ~ 14895624 (-)
G155039 NA non-coding upstream 511578 14963233 ~ 14963846 (-)
med9 med9 other downstream 384449 14050738 ~ 14057354 (-)
tfap4 tfap4 other downstream 809967 13589483 ~ 13631836 (-)
prkar1b prkar1b,LOC107661853,LOC107653458 other downstream 1019852 13335449 ~ 13421951 (-)
sun1 sun1,LOC104947709,LOC102193096,LOC103360714 other downstream 1429022 12973260 ~ 13012781 (-)
iqck NA other downstream 1468974 12954974 ~ 12972829 (-)
LOC120574967 mafg,LOC104918330,LOC108241257,LOC103373400,LOC101487863,LOC106533856 other upstream 3182 14454837 ~ 14471430 (-)
cenpx cenpx other upstream 74471 14526126 ~ 14529153 (-)
LOC120574989 LOC108241285,LOC103373333,LOC106518659 other upstream 82027 14533682 ~ 14543994 (-)
LOC120574213 NA other upstream 314079 14765734 ~ 14790778 (-)
LOC120574214 bahcc1,LOC106528540,LOC108241329,LOC107083174 other upstream 343991 14795646 ~ 14828239 (-)

Expression


Co-expression Network