LOC120574250 (col1,LOC108233705)


Basic Information

Item Value
gene id LOC120574250
gene name col1,LOC108233705
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 1609660 ~ 1610464 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005641847.1
GGGTGCCCCTGGTGGTCGTGGTTTCCCTGGTTCTGATGGCGCTGCTGGACCCAAAGGTGCCACTGGCGAGCGCGGTGCCCCCGGTCTTGTTGGACCTAAAGGTTCTACCGGTGAGCCTGGTTTGCCCGGAGCTAAGGGTATGACTGGTAGCCCTGGACCTGATGGCAAGATGGGACCTGCTGGAGCCGCTGGACAAGATGGCCGCCCCGGACCCCCTGGCACCGATGGAGCAAGAGGCCTGCCTGGAGTCATGGGATTCCACGGACCCAAGGGAGCTGCTGGTGACGCTGGAAAACCTGGCGAGAGG

Function

NR:

description
PREDICTED: collagen alpha-1(I) chain-like isoform X2

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005641847.1 True 307 lncRNA 0.64 5 1609660 1610464

Neighbor

gene id symbol gene type direction distance location
LOC120573930 LOC103363959,LOC101479828,LOC102300806,LOC102197709 coding downstream 66250 1520386 ~ 1543410 (-)
LOC120574716 LOC102301616,LOC103363960,LOC100701445 coding downstream 100548 1500772 ~ 1509112 (-)
LOC120575499 NA coding downstream 164337 1429165 ~ 1445323 (-)
LOC120573831 hspa6,LOC100700083 coding downstream 213192 1392492 ~ 1396468 (-)
taok2a LOC103363962 coding downstream 225932 1341826 ~ 1383728 (-)
LOC120574288 LOC108233705,LOC103393603 coding upstream 10210 1620674 ~ 1647069 (-)
LOC120574768 LOC103358687,LOC104930242 coding upstream 394412 2004876 ~ 2058639 (-)
ilf3b ilf3,LOC102795819 coding upstream 554256 2164720 ~ 2209257 (-)
LOC120573916 LOC103358683,LOC104942087,LOC104930238,LOC103393647 coding upstream 604130 2214594 ~ 2224968 (-)
si:ch211-194b1.1 wiz,LOC107731472 coding upstream 744978 2355442 ~ 2433220 (-)
G150855 NA non-coding downstream 20352 1588768 ~ 1589308 (-)
G150776 NA non-coding downstream 89381 1519958 ~ 1520279 (-)
G150775 NA non-coding downstream 89754 1519690 ~ 1519906 (-)
G150765 NA non-coding downstream 121346 1485602 ~ 1488314 (-)
G150764 NA non-coding downstream 127687 1481743 ~ 1481973 (-)
G150865 NA non-coding upstream 29015 1639479 ~ 1639851 (-)
G150869 NA non-coding upstream 75013 1685477 ~ 1686203 (-)
G150862 NA non-coding upstream 88398 1698862 ~ 1736283 (-)
G150860 NA non-coding upstream 113236 1723700 ~ 1738851 (-)
G150992 NA non-coding upstream 298952 1909416 ~ 2072683 (-)
LOC120575421 LOC106675350 other downstream 144352 1461342 ~ 1465308 (-)
LOC120575422 LOC106675350 other downstream 148679 1456747 ~ 1460981 (-)
LOC120573832 maz,LOC101481851,LOC103375157,LOC102304652,LOC101067998,LOC105024369,LOC102195162 other downstream 287627 1302340 ~ 1322033 (-)
G150705 NA other downstream 369670 1238242 ~ 1239990 (-)
G150694 NA other downstream 435637 1170045 ~ 1174023 (-)
G150856 NA other upstream 113658 1724122 ~ 1739481 (-)
LOC120573867 LOC108236047,LOC107376309,LOC101475947,LOC100695382,LOC106520692,LOC105918010 other upstream 205601 1816065 ~ 1822128 (-)
LOC120573864 NA other upstream 235276 1845740 ~ 1872092 (-)
farsa farsa other upstream 522268 2132732 ~ 2161724 (-)
G151146 NA other upstream 789345 2399809 ~ 2805411 (-)

Expression


Co-expression Network