LOC120574445


Basic Information

Item Value
gene id LOC120574445
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 22868090 ~ 22869552 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005641862.1
CGTAACACTCCAGGATCTCTGAGATCACCTCAGGCATGCTGTCCATATCTCCAAAATCCAGCAGCACCAGTTTAGAGGGGAACGTCTGAGGAGGAGAGCCAGTCATGATAAAGAGATGGAAAAGTCTTTTGCTGATGATGCAGATGAGATGGGATGGGATGTCAAAGACCATTTAGGATCTAATGAACgtgattaacatttaaaaaataaataaaataataaatacttaTTTGTGGATCGTAActtagttttttcttctttcttctcccaTTACTCATCTCACGACCCCTCAGATTTGTCTTGTGATCCTTTGGAGGGGCTCGACCCCTAGGTTAGCAACCAATGGGCTAAACCAGCTAACCGTTTATAAAGTAGTTAAATCTAGCTTCACCTCGAGCAGCTGCAACAGTAACATGCTGCTCCAacattgatgatgatgatgataacttTATTCTtagactcaaggtccacttaaaAACATACAACACAATTAAAAGGACAGACACATACATCACTATTAATAATAAGAGTGTGTAGTAGGACGTCTACTACACCAATGGAGTATTTTAGTATACAGCAATCTGTTTCCAGTTTTGGTGCTGTTGTACTTACCACAGTGGGGTCTGAGGCATTTGCCAAGTCATCGGCCAGTTCTTCAAGTTTCTCCCAACTCTTCCCGCAGAGGATCAGCCTCGCTCCTCCTCTGTGAAACACACCTGCACATTCtgcattgattaaaaaaaaaaaaaaaaagtttgactgTAAAATCAAATGGA

Function

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005641862.1 True 776 lncRNA 0.40 2 22868090 22869552

Neighbor

gene id symbol gene type direction distance location
LOC120574443 LOC103366163,LOC100708876 coding downstream 5148 22839811 ~ 22862942 (-)
LOC120574479 NA coding downstream 60105 22798548 ~ 22807985 (-)
LOC120574860 NA coding downstream 117012 22742564 ~ 22751078 (-)
LOC120574427 NA coding downstream 167811 22697844 ~ 22700279 (-)
grap2a LOC104946499,LOC103373439 coding downstream 177433 22672290 ~ 22690657 (-)
LOC120574446 LOC102783016,LOC103366166,LOC100706730 coding upstream 5231 22874783 ~ 22885158 (-)
gas7a gas7,LOC102197773,LOC100706459,LOC107395332,LOC103366168,LOC101481278,LOC102288966 coding upstream 27316 22896868 ~ 22941307 (-)
LOC120574123 LOC103366176,LOC100705928,LOC102197206,LOC101481850 coding upstream 98934 22968486 ~ 22992167 (-)
LOC120574122 LOC103366169 coding upstream 125715 22995267 ~ 23015774 (-)
LOC120575374 sco1,LOC104946671,LOC101062683,LOC108258077 coding upstream 151474 23021026 ~ 23029769 (-)
G157459 NA non-coding downstream 28868 22836666 ~ 22839222 (-)
G157358 NA non-coding downstream 293486 22574369 ~ 22574604 (-)
G157357 NA non-coding downstream 293982 22573837 ~ 22574108 (-)
G157337 NA non-coding downstream 432212 22435303 ~ 22435878 (-)
G157312 LOC101166874,LOC107396272,LOC107097254,LOC104954376,LOC103392522,LOC106518874,LOC101065127 non-coding downstream 453930 22411892 ~ 22414160 (-)
G157488 NA non-coding upstream 123952 22993504 ~ 22994386 (-)
G157554 NA non-coding upstream 390165 23259717 ~ 23260118 (-)
G157555 NA non-coding upstream 398374 23267926 ~ 23271008 (-)
G157556 NA non-coding upstream 401517 23271069 ~ 23272098 (-)
G157570 NA non-coding upstream 463671 23333223 ~ 23335273 (-)
LOC120575271 LOC104967158,LOC103366161 other downstream 33434 22808536 ~ 22834656 (-)
G157384 LOC102296880,LOC102202593,LOC101475579 other downstream 228701 22625786 ~ 22639389 (-)
G157147 cdhr2 other downstream 1012074 21849095 ~ 21856016 (-)
LOC120575106 LOC103367329,LOC107658449,LOC107564019,LOC107674165,LOC104934486 other downstream 1111899 21754741 ~ 21756191 (-)
G157096 LOC102782282,LOC100692966,LOC103367351,LOC107084765,LOC104927186,LOC102201015 other downstream 1127387 21734382 ~ 21740703 (-)
tmem100a tmem100,LOC104954564,LOC101486137 other upstream 575810 23445362 ~ 23448560 (-)
cbx2 cbx2,LOC104963701 other upstream 657892 23527444 ~ 23534409 (-)
G157645 LOC103366762 other upstream 1263496 24133048 ~ 24138023 (-)
G157659 NA other upstream 1300364 24169916 ~ 24210476 (-)
LOC120574739 LOC102777962,LOC100701079 other upstream 1601412 24470964 ~ 24524311 (-)

Expression


Co-expression Network