LOC120574719


Basic Information

Item Value
gene id LOC120574719
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12567178 ~ 12567810 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005641891.1
TTCCTCATCTTGTATTTGAAGAAGTCTTTCAATATCCATCCGAGACAACTGGGCCTTCCAATACTGCAGGAGGGTATAGCCAAGCTAATTACATGAGCAAGGGGTTTTCAACTGGAAATGCCGCCTCACTAGGGGGACCCTCATTCCCCAGGAACCCAACTAATGTCGGTGCCCAAATGGGCTTGAAGGGTTTTTGGATTCCACAAAAACAATTTGTCGGCTCTCAAAACGTGGTTAACCCGAGAGTGCGTAAACCGATCCTTCCTCCTCCAAGCTATGGAAAGTCCAGTAATGGCTACCAGAAGGCCAGGTACATGCCAGTGTTTCCCTATCCAATGCCTGTAAGCTCAAACGGTGTCCAGGGTCAATCTGCTGCCCCAAAAGGTGTATAACCCTCAAAGGGTCAAATGGTTACAACATGGATAATGTCCTGAGTTGCAgAATGATGTGCCCTccaagaaaaataaaactttattcaAAATTCA

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005641891.1 True 485 lncRNA 0.46 3 12567178 12567810

Neighbor

gene id symbol gene type direction distance location
axin2 LOC103361462 coding downstream 139672 12413431 ~ 12427506 (-)
tex2 LOC103361461 coding downstream 210086 12342804 ~ 12357092 (-)
LOC120574755 ern1 coding downstream 225895 12320594 ~ 12341283 (-)
samd9l LOC102078066,LOC102793943,LOC102205815,LOC102308574,LOC101466743 coding downstream 246914 12309749 ~ 12320264 (-)
gaa gaa coding downstream 260012 12298317 ~ 12307166 (-)
LOC120575015 LOC103393018,LOC102303741,LOC101486233,LOC102226583,LOC106518738,LOC108437157,LOC108239256 coding upstream 127075 12694885 ~ 12727024 (-)
LOC120574004 stk19 coding upstream 179007 12746817 ~ 12749160 (-)
LOC120574003 LOC104947694,LOC103373535,LOC108239260,LOC101158446,LOC103141614 coding upstream 185660 12753470 ~ 12760056 (-)
trnal-uag_2 NA coding upstream 275083 12842893 ~ 12842974 (-)
cdr2a LOC104947687 coding upstream 276586 12844396 ~ 12853731 (-)
G154368 NA non-coding downstream 165703 12400252 ~ 12401475 (-)
LOC120574757 NA non-coding downstream 193184 12361239 ~ 12373994 (-)
G154305 slc5a11,LOC102796461 non-coding downstream 383353 12183611 ~ 12183825 (-)
G154275 NA non-coding downstream 411366 12131386 ~ 12155812 (-)
G154248 rps2 non-coding downstream 511974 12052806 ~ 12055204 (-)
LOC120574718 NA non-coding upstream 409 12568219 ~ 12568696 (-)
LOC120574720 NA non-coding upstream 109683 12677493 ~ 12679110 (-)
G154437 LOC104947690 non-coding upstream 198888 12766698 ~ 12768603 (-)
G154438 NA non-coding upstream 201599 12769409 ~ 12770122 (-)
G154446 LOC104918798,LOC100695608,LOC101483500,LOC105930091 non-coding upstream 211205 12779015 ~ 12781445 (-)
cep112 NA other downstream 1707 12427504 ~ 12565471 (-)
LOC120574419 NA other downstream 476197 12085985 ~ 12090981 (-)
G154033 NA other downstream 1341632 11203450 ~ 11225546 (-)
tnrc6c1 LOC103361861 other downstream 1429650 11098316 ~ 11137528 (-)
LOC120574486 NA other downstream 1486571 11078545 ~ 11080607 (-)
LOC120575506 LOC100697827 other upstream 167634 12735444 ~ 12737483 (-)
iqck NA other upstream 387164 12954974 ~ 12972829 (-)
sun1 sun1,LOC104947709,LOC102193096,LOC103360714 other upstream 405450 12973260 ~ 13012781 (-)
prkar1b prkar1b,LOC107661853,LOC107653458 other upstream 767639 13335449 ~ 13421951 (-)
tfap4 tfap4 other upstream 1021673 13589483 ~ 13631836 (-)

Expression


Co-expression Network