LOC120574376


Basic Information

Item Value
gene id LOC120574376
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9443243 ~ 9443724 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_770
atgatggactataggacaggactgctgcttttaactctctgctgggcaggtgttgatggtcagactctgacagaatctgaaccagcggttaaaagacctggagaatctcacagattgacctgtacaacatctggattCACATTTAGTAGCTACAGGATGAACtggatcagacaggctcctggaaaaggactggagtgtGTTGCGAGTATCTACAGTACTAACATCtactactctcagtcagtccaaggccggtttaccgtctccagagacaacagcagacagcaggtgtatctgcagatgaacagtctgaagactgaagattctgctgtttattattgtgctcgagaGCCACAGTGA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04650 Natural killer cell mediated cytotoxicity
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_770 True 357 V_gene_segment 0.46 2 9443243 9443724

Neighbor

gene id symbol gene type direction distance location
LOC120574373 NA coding downstream 6377 9435292 ~ 9436866 (-)
LOC120574659 NA coding downstream 18197 9424509 ~ 9425046 (-)
LOC120574660 NA coding downstream 22545 9420152 ~ 9420698 (-)
LOC120574369 NA coding downstream 34761 9407854 ~ 9408482 (-)
LOC120574368 NA coding downstream 36439 9391565 ~ 9406804 (-)
cacna1aa NA coding upstream 617562 10061286 ~ 10149482 (-)
gtf2f1 gtf2f1 coding upstream 722988 10166712 ~ 10176011 (-)
luc7l3 luc7l3,LOC102798435 coding upstream 1165274 10608998 ~ 10618057 (-)
LOC120574864 tob1 coding upstream 1229618 10673342 ~ 10677290 (-)
spag9a NA coding upstream 1295184 10738908 ~ 10772253 (-)
G153527 NA non-coding downstream 83393 9359528 ~ 9359850 (-)
G153508 NA non-coding downstream 139896 9248397 ~ 9303347 (-)
G153509 NA non-coding downstream 177876 9258210 ~ 9265367 (-)
G153462 NA non-coding downstream 223340 9219599 ~ 9219903 (-)
G153455 NA non-coding downstream 239384 9196758 ~ 9203859 (-)
G153539 NA non-coding upstream 98394 9542118 ~ 9548305 (-)
G153481 NA non-coding upstream 159133 9602857 ~ 9603106 (-)
G153588 NA non-coding upstream 308535 9752259 ~ 9798267 (-)
G153591 NA non-coding upstream 335565 9779289 ~ 9782563 (-)
G153597 NA non-coding upstream 350368 9794092 ~ 9842982 (-)
LOC120574607 NA other downstream 446 9442247 ~ 9442797 (-)
LOC120574375 NA other downstream 2143 9440564 ~ 9441100 (-)
LOC120574374 NA other downstream 3750 9438974 ~ 9439493 (-)
G153473 NA other downstream 10242 9428183 ~ 9433001 (-)
G153499 NA other downstream 47316 9395424 ~ 9395927 (-)
LOC120574377 NA other upstream 3159 9446883 ~ 9455662 (-)
LOC120574645 NA other upstream 13242 9456966 ~ 9457470 (-)
LOC120574378 NA other upstream 19867 9463591 ~ 9469202 (-)
LOC120574379 LOC106526304 other upstream 20876 9464600 ~ 9465189 (-)
LOC120574380 NA other upstream 23784 9467508 ~ 9467948 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1185535 NA unknown NC_048577.1 CM023231.2 51697876 ~ 51698646 (+)